Wall clock time and date at job start Mon Mar 30 2020 03:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20767 * 119.99928 * 2 1 4 4 C 1.50696 * 120.00398 * 180.02562 * 2 1 3 5 5 C 1.50697 * 109.47293 * 180.02562 * 4 2 1 6 6 C 1.37646 * 120.12555 * 265.25154 * 5 4 2 7 7 C 1.38614 * 120.24480 * 180.25701 * 6 5 4 8 8 C 1.38654 * 120.50230 * 359.74212 * 7 6 5 9 9 C 1.50704 * 119.87480 * 180.02562 * 8 7 6 10 10 C 1.37599 * 120.25238 * 359.97438 * 8 7 6 11 11 C 1.40694 * 120.13162 * 84.99844 * 5 4 2 12 12 C 1.41396 * 120.24317 * 0.02562 * 11 5 4 13 13 H 1.08003 * 120.00004 * 333.53470 * 12 11 5 14 14 C 1.39951 * 120.00293 * 153.80993 * 12 11 5 15 15 N 1.30821 * 119.99928 * 343.61772 * 14 12 11 16 16 Si 1.86793 * 119.99991 * 163.61760 * 14 12 11 17 17 H 1.48502 * 109.47288 * 90.00264 * 16 14 12 18 18 H 1.48505 * 109.46981 * 209.99960 * 16 14 12 19 19 H 1.48503 * 109.47388 * 329.99962 * 16 14 12 20 20 H 1.08998 * 109.46898 * 239.99789 * 1 2 3 21 21 H 1.08997 * 109.46931 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46732 * 120.00276 * 1 2 3 23 23 H 1.08992 * 109.47475 * 59.99602 * 4 2 1 24 24 H 1.09010 * 109.46810 * 299.99815 * 4 2 1 25 25 H 1.07995 * 119.87579 * 359.97438 * 6 5 4 26 26 H 1.08001 * 119.74644 * 179.71878 * 7 6 5 27 27 H 1.09004 * 109.46919 * 269.97985 * 9 8 7 28 28 H 1.08996 * 109.47517 * 29.97632 * 9 8 7 29 29 H 1.08997 * 109.47536 * 149.97808 * 9 8 7 30 30 H 1.07992 * 120.12875 * 180.02562 * 10 8 7 31 31 H 0.97001 * 120.00155 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3050 -0.0006 5 6 3.7422 -1.0296 0.0002 6 6 4.4398 -0.9994 -1.1860 7 6 5.8036 -0.7516 -1.1877 8 6 6.4795 -0.5262 0.0018 9 6 7.9623 -0.2576 -0.0166 10 6 5.8014 -0.5459 1.1989 11 6 4.4167 -0.7970 1.2128 12 6 3.7095 -0.8208 2.4370 13 1 2.6546 -0.5900 2.4558 14 6 4.3778 -1.1377 3.6251 15 7 5.5504 -1.7160 3.5818 16 14 3.5953 -0.7348 5.2728 17 1 2.7691 -1.8839 5.7226 18 1 4.6592 -0.4682 6.2740 19 1 2.7357 0.4678 5.1317 20 1 -0.3633 -0.5139 0.8900 21 1 -0.3633 1.0276 0.0005 22 1 -0.3633 -0.5139 -0.8900 23 1 1.9973 -1.8762 -0.8907 24 1 1.9972 -1.8770 0.8893 25 1 3.9236 -1.1740 -2.1183 26 1 6.3439 -0.7342 -2.1227 27 1 8.5034 -1.2003 0.0659 28 1 8.2308 0.2348 -0.9512 29 1 8.2253 0.3869 0.8222 30 1 6.3297 -0.3697 2.1241 31 1 6.0137 -1.9353 4.4053 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307435754.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:25 Heat of formation + Delta-G solvation = -38.358737 kcal Electronic energy + Delta-G solvation = -14409.005995 eV Core-core repulsion = 12040.445253 eV Total energy + Delta-G solvation = -2368.560741 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.88173 -37.34589 -33.74264 -32.54412 -30.24292 -29.46490 -27.88960 -25.46676 -23.90274 -21.01848 -19.65815 -18.58180 -16.88133 -15.35014 -14.99210 -14.79263 -14.61532 -13.77033 -13.62230 -13.26729 -12.64458 -12.55211 -12.00174 -11.93511 -11.55738 -11.44058 -11.37100 -11.08240 -10.89342 -10.69674 -10.59081 -10.24027 -9.45063 -9.35919 -9.10912 -8.87717 -7.27729 -7.08605 -6.69272 -4.31741 2.75062 2.80982 3.01609 3.08252 3.13249 3.28427 3.95720 4.63476 4.87460 5.48190 5.66572 5.70988 5.84762 6.03445 6.09319 6.15684 6.25614 6.43865 6.46877 6.54145 6.56271 6.72787 6.86649 7.11634 7.35346 7.49000 7.69224 7.95207 8.09332 8.17911 8.32228 8.36169 8.67396 8.94593 9.04939 10.23688 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.017294 B = 0.015359 C = 0.008806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.674724 B = 1822.642394 C = 3178.825728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.348 3.652 3 O -0.446 6.446 4 C -0.104 4.104 5 C -0.189 4.189 6 C -0.084 4.084 7 C -0.235 4.235 8 C -0.082 4.082 9 C -0.100 4.100 10 C -0.155 4.155 11 C 0.126 3.874 12 C -0.460 4.460 13 H 0.073 0.927 14 C 0.077 3.923 15 N -0.795 5.795 16 Si 0.901 3.099 17 H -0.270 1.270 18 H -0.276 1.276 19 H -0.261 1.261 20 H 0.086 0.914 21 H 0.072 0.928 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.099 0.901 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.117 0.883 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.777 -0.538 -2.613 5.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.222 3.778 3 O -0.319 6.319 4 C -0.141 4.141 5 C -0.191 4.191 6 C -0.102 4.102 7 C -0.254 4.254 8 C -0.082 4.082 9 C -0.157 4.157 10 C -0.175 4.175 11 C 0.124 3.876 12 C -0.490 4.490 13 H 0.091 0.909 14 C -0.140 4.140 15 N -0.421 5.421 16 Si 0.726 3.274 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.185 1.185 20 H 0.105 0.895 21 H 0.091 0.909 22 H 0.102 0.898 23 H 0.097 0.903 24 H 0.117 0.883 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.135 0.865 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.266 -0.073 -2.450 4.920 hybrid contribution -0.384 -0.023 0.801 0.889 sum -4.650 -0.096 -1.648 4.934 Atomic orbital electron populations 1.22361 0.96202 1.03868 1.03782 1.24777 0.90739 0.91459 0.70836 1.90381 1.71948 1.35070 1.34452 1.20719 0.94498 0.95899 1.02955 1.19231 0.92903 1.13071 0.93849 1.20305 0.94072 1.00358 0.95477 1.20179 0.94280 1.15257 0.95710 1.19515 0.94106 1.00573 0.93993 1.20630 0.94254 1.00319 1.00494 1.21168 0.95042 1.05423 0.95822 1.17342 0.91818 0.87007 0.91416 1.19444 0.96632 1.41834 0.91042 0.90888 1.25868 0.94534 0.92433 1.01173 1.69820 1.13360 1.28856 1.30074 0.86422 0.79828 0.79979 0.81179 1.19518 1.20097 1.18536 0.89507 0.90935 0.89827 0.90332 0.88271 0.89754 0.89666 0.92800 0.93406 0.92928 0.86488 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.75 10.26 36.01 0.37 -2.38 16 2 C 0.35 6.64 6.90 -29.04 -0.20 6.44 16 3 O -0.45 -10.55 16.76 5.99 0.10 -10.45 16 4 C -0.10 -2.04 5.12 -29.04 -0.15 -2.19 16 5 C -0.19 -4.62 4.43 -103.91 -0.46 -5.08 16 6 C -0.08 -1.97 9.66 -39.66 -0.38 -2.35 16 7 C -0.23 -5.54 9.70 -39.29 -0.38 -5.92 16 8 C -0.08 -1.99 5.87 -104.70 -0.61 -2.60 16 9 C -0.10 -2.00 10.00 36.01 0.36 -1.64 16 10 C -0.16 -4.18 8.32 -38.87 -0.32 -4.50 16 11 C 0.13 3.42 5.56 -106.83 -0.59 2.83 16 12 C -0.46 -12.19 8.13 -37.74 -0.31 -12.50 16 13 H 0.07 1.86 6.69 -52.48 -0.35 1.51 16 14 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 15 N -0.80 -20.70 10.97 55.55 0.61 -20.09 16 16 Si 0.90 18.90 29.59 -169.99 -5.03 13.87 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 19 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 20 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 21 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 22 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 23 H 0.08 1.30 8.05 -51.93 -0.42 0.88 16 24 H 0.10 1.93 7.07 -51.92 -0.37 1.56 16 25 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 26 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 29 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 30 H 0.12 3.24 6.22 -52.49 -0.33 2.91 16 31 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 LS Contribution 268.91 15.07 4.05 4.05 Total: -1.00 -30.09 268.91 -7.01 -37.10 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -3.97 Total: 3.54 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: -2.77 Total: -28.03 kcal Atomic # 7 Polarization: -20.70 SS G_CDS: 0.61 Total: -20.09 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.10 Total: -10.45 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.09 -7.01 -37.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307435754.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.259 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds