Wall clock time and date at job start Mon Mar 30 2020 03:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20767 * 119.99928 * 2 1 4 4 C 1.50696 * 120.00398 * 180.02562 * 2 1 3 5 5 C 1.50697 * 109.47293 * 180.02562 * 4 2 1 6 6 C 1.37646 * 120.12555 * 265.25154 * 5 4 2 7 7 C 1.38614 * 120.24480 * 180.25701 * 6 5 4 8 8 C 1.38654 * 120.50230 * 359.74212 * 7 6 5 9 9 C 1.50704 * 119.87480 * 180.02562 * 8 7 6 10 10 C 1.37599 * 120.25238 * 359.97438 * 8 7 6 11 11 C 1.40694 * 120.13162 * 84.99844 * 5 4 2 12 12 C 1.41396 * 120.24317 * 0.02562 * 11 5 4 13 13 H 1.08003 * 120.00004 * 333.53470 * 12 11 5 14 14 C 1.39951 * 120.00293 * 153.80993 * 12 11 5 15 15 N 1.30821 * 119.99928 * 343.61772 * 14 12 11 16 16 Si 1.86793 * 119.99991 * 163.61760 * 14 12 11 17 17 H 1.48502 * 109.47288 * 90.00264 * 16 14 12 18 18 H 1.48505 * 109.46981 * 209.99960 * 16 14 12 19 19 H 1.48503 * 109.47388 * 329.99962 * 16 14 12 20 20 H 1.08998 * 109.46898 * 239.99789 * 1 2 3 21 21 H 1.08997 * 109.46931 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46732 * 120.00276 * 1 2 3 23 23 H 1.08992 * 109.47475 * 59.99602 * 4 2 1 24 24 H 1.09010 * 109.46810 * 299.99815 * 4 2 1 25 25 H 1.07995 * 119.87579 * 359.97438 * 6 5 4 26 26 H 1.08001 * 119.74644 * 179.71878 * 7 6 5 27 27 H 1.09004 * 109.46919 * 269.97985 * 9 8 7 28 28 H 1.08996 * 109.47517 * 29.97632 * 9 8 7 29 29 H 1.08997 * 109.47536 * 149.97808 * 9 8 7 30 30 H 1.07992 * 120.12875 * 180.02562 * 10 8 7 31 31 H 0.97001 * 120.00155 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3050 -0.0006 5 6 3.7422 -1.0296 0.0002 6 6 4.4398 -0.9994 -1.1860 7 6 5.8036 -0.7516 -1.1877 8 6 6.4795 -0.5262 0.0018 9 6 7.9623 -0.2576 -0.0166 10 6 5.8014 -0.5459 1.1989 11 6 4.4167 -0.7970 1.2128 12 6 3.7095 -0.8208 2.4370 13 1 2.6546 -0.5900 2.4558 14 6 4.3778 -1.1377 3.6251 15 7 5.5504 -1.7160 3.5818 16 14 3.5953 -0.7348 5.2728 17 1 2.7691 -1.8839 5.7226 18 1 4.6592 -0.4682 6.2740 19 1 2.7357 0.4678 5.1317 20 1 -0.3633 -0.5139 0.8900 21 1 -0.3633 1.0276 0.0005 22 1 -0.3633 -0.5139 -0.8900 23 1 1.9973 -1.8762 -0.8907 24 1 1.9972 -1.8770 0.8893 25 1 3.9236 -1.1740 -2.1183 26 1 6.3439 -0.7342 -2.1227 27 1 8.5034 -1.2003 0.0659 28 1 8.2308 0.2348 -0.9512 29 1 8.2253 0.3869 0.8222 30 1 6.3297 -0.3697 2.1241 31 1 6.0137 -1.9353 4.4053 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307435754.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:25 Heat of formation + Delta-G solvation = -55.045806 kcal Electronic energy + Delta-G solvation = -14409.729600 eV Core-core repulsion = 12040.445253 eV Total energy + Delta-G solvation = -2369.284347 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.52572 -39.12366 -35.62743 -34.28632 -31.65627 -31.36427 -29.35805 -27.37768 -25.57324 -22.92112 -21.36430 -20.19780 -18.79802 -17.13244 -16.50372 -16.42354 -16.24651 -15.47817 -15.29502 -14.96434 -14.38006 -14.26135 -13.33770 -13.31447 -13.23518 -13.02184 -12.89080 -12.77818 -12.65425 -12.35923 -12.29254 -12.01814 -11.28615 -11.18528 -10.98483 -10.42698 -9.21864 -8.93822 -8.56597 -6.28953 1.00435 1.15070 1.28836 1.36048 1.47236 1.53914 2.20255 2.76403 3.43359 3.86332 4.26268 4.35791 4.43193 4.56139 4.58388 4.71940 4.79165 4.83839 4.89322 4.93676 5.10194 5.12564 5.21848 5.33568 5.40973 5.63010 5.82483 6.07338 6.18954 6.27075 6.44743 6.74557 6.88583 7.00378 7.13677 8.38059 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.017294 B = 0.015359 C = 0.008806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.674724 B = 1822.642394 C = 3178.825728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.348 3.652 3 O -0.504 6.504 4 C -0.108 4.108 5 C -0.201 4.201 6 C -0.097 4.097 7 C -0.243 4.243 8 C -0.095 4.095 9 C -0.095 4.095 10 C -0.192 4.192 11 C 0.091 3.909 12 C -0.488 4.488 13 H 0.073 0.927 14 C 0.035 3.965 15 N -0.828 5.828 16 Si 0.972 3.028 17 H -0.255 1.255 18 H -0.270 1.270 19 H -0.265 1.265 20 H 0.107 0.893 21 H 0.074 0.926 22 H 0.120 0.880 23 H 0.116 0.884 24 H 0.099 0.901 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.211 -0.985 -3.285 7.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.227 3.773 3 O -0.380 6.380 4 C -0.145 4.145 5 C -0.202 4.202 6 C -0.115 4.115 7 C -0.262 4.262 8 C -0.095 4.095 9 C -0.152 4.152 10 C -0.212 4.212 11 C 0.089 3.911 12 C -0.518 4.518 13 H 0.091 0.909 14 C -0.179 4.179 15 N -0.454 5.454 16 Si 0.793 3.207 17 H -0.179 1.179 18 H -0.194 1.194 19 H -0.190 1.190 20 H 0.126 0.874 21 H 0.093 0.907 22 H 0.138 0.862 23 H 0.134 0.866 24 H 0.117 0.883 25 H 0.134 0.866 26 H 0.131 0.869 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.711 -0.545 -3.137 6.538 hybrid contribution 0.087 0.077 0.887 0.894 sum -5.623 -0.468 -2.250 6.075 Atomic orbital electron populations 1.22308 0.91147 1.05014 1.06447 1.25367 0.93426 0.89984 0.68521 1.90375 1.73625 1.36586 1.37461 1.20857 0.91869 0.97118 1.04675 1.19780 0.95558 1.11549 0.93314 1.20763 0.94452 0.99733 0.96525 1.20612 0.94832 1.14253 0.96479 1.19990 0.96387 0.99639 0.93515 1.20635 0.91537 1.01180 1.01860 1.21195 0.95723 1.08145 0.96117 1.17794 0.92409 0.87991 0.92955 1.19638 0.96841 1.43323 0.91990 0.90929 1.26689 0.94984 0.91759 1.04488 1.69889 1.14647 1.29603 1.31265 0.85357 0.78966 0.79790 0.76569 1.17890 1.19421 1.18970 0.87429 0.90660 0.86174 0.86644 0.88280 0.86633 0.86900 0.91655 0.90846 0.92985 0.88622 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.52 10.26 71.24 0.73 -3.78 16 2 C 0.35 12.82 6.90 29.10 0.20 13.02 16 3 O -0.50 -23.97 16.76 -1.47 -0.02 -23.99 16 4 C -0.11 -4.11 5.12 29.10 0.15 -3.96 16 5 C -0.20 -9.81 4.43 -19.40 -0.09 -9.89 16 6 C -0.10 -4.43 9.66 22.22 0.21 -4.22 16 7 C -0.24 -11.20 9.70 22.46 0.22 -10.99 16 8 C -0.10 -4.67 5.87 -19.91 -0.12 -4.79 16 9 C -0.10 -3.74 10.00 71.24 0.71 -3.03 16 10 C -0.19 -10.75 8.32 22.73 0.19 -10.56 16 11 C 0.09 5.05 5.56 -21.29 -0.12 4.93 16 12 C -0.49 -26.64 8.13 23.46 0.19 -26.45 16 13 H 0.07 3.80 6.69 -2.91 -0.02 3.78 16 14 C 0.03 1.81 5.16 85.26 0.44 2.25 16 15 N -0.83 -44.44 10.97 21.83 0.24 -44.20 16 16 Si 0.97 39.23 29.59 68.60 2.03 41.26 16 17 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 18 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 19 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 20 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 21 H 0.07 1.77 8.12 -2.39 -0.02 1.75 16 22 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.12 3.45 8.05 -2.39 -0.02 3.43 16 24 H 0.10 3.77 7.07 -2.38 -0.02 3.75 16 25 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 26 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 27 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 28 H 0.07 2.46 8.08 -2.39 -0.02 2.44 16 29 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 30 H 0.10 5.61 6.22 -2.91 -0.02 5.59 16 31 H 0.28 13.90 8.30 -92.71 -0.77 13.13 16 Total: -1.00 -68.01 268.91 6.08 -61.93 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 1.11 Total: 22.47 kcal Atomic # 6 Polarization: -60.19 SS G_CDS: 2.72 Total: -57.46 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.24 Total: -44.20 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.02 Total: -23.99 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -68.01 6.08 -61.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307435754.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.883 kcal (2) G-P(sol) polarization free energy of solvation -68.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds