Wall clock time and date at job start Mon Mar 30 2020 03:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.20755 * 120.00135 * 2 1 4 4 C 1.50700 * 119.99706 * 179.97438 * 2 1 3 5 5 C 1.50703 * 109.46968 * 180.02562 * 4 2 1 6 6 C 1.38657 * 119.87809 * 89.99837 * 5 4 2 7 7 C 1.38611 * 120.50044 * 180.02562 * 6 5 4 8 8 C 1.50701 * 119.87113 * 179.97438 * 7 6 5 9 9 C 1.37630 * 120.24959 * 0.02562 * 7 6 5 10 10 C 1.40701 * 119.74550 * 359.97438 * 9 7 6 11 11 C 1.41394 * 120.24317 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00031 * 150.21267 * 11 10 9 13 13 C 1.39951 * 120.00182 * 330.21617 * 11 10 9 14 14 N 1.30825 * 119.99811 * 161.72502 * 13 11 10 15 15 Si 1.86794 * 120.00030 * 341.71938 * 13 11 10 16 16 H 1.48504 * 109.47014 * 95.41062 * 15 13 11 17 17 H 1.48494 * 109.47477 * 215.41191 * 15 13 11 18 18 H 1.48508 * 109.47234 * 335.41405 * 15 13 11 19 19 C 1.37592 * 119.87171 * 270.02130 * 5 4 2 20 20 H 1.08994 * 109.47370 * 270.00567 * 1 2 3 21 21 H 1.09005 * 109.46354 * 30.00681 * 1 2 3 22 22 H 1.09002 * 109.46937 * 150.00174 * 1 2 3 23 23 H 1.09003 * 109.47399 * 60.00003 * 4 2 1 24 24 H 1.09003 * 109.46955 * 300.00454 * 4 2 1 25 25 H 1.07998 * 119.74561 * 359.74555 * 6 5 4 26 26 H 1.09000 * 109.46628 * 90.00500 * 8 7 6 27 27 H 1.09004 * 109.47231 * 209.99680 * 8 7 6 28 28 H 1.08991 * 109.47662 * 330.00646 * 8 7 6 29 29 H 1.08001 * 120.12999 * 180.02562 * 9 7 6 30 30 H 0.97002 * 119.99668 * 180.02562 * 14 13 11 31 31 H 1.08003 * 120.13471 * 359.95308 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7422 -1.0298 0.0011 6 6 4.4208 -0.9033 1.2036 7 6 5.7834 -0.6495 1.2191 8 6 6.5067 -0.5141 2.5343 9 6 6.4780 -0.5198 0.0381 10 6 5.7997 -0.6462 -1.1882 11 6 6.5030 -0.5153 -2.4078 12 1 6.1684 -1.0504 -3.2842 13 6 7.6329 0.3075 -2.4793 14 7 8.4835 0.1665 -3.4632 15 14 7.9263 1.6070 -1.1699 16 1 8.8356 1.0642 -0.1288 17 1 8.5449 2.8053 -1.7916 18 1 6.6315 1.9845 -0.5482 19 6 4.4163 -0.9044 -1.1918 20 1 -0.3634 0.0001 1.0276 21 1 -0.3632 0.8900 -0.5140 22 1 -0.3633 -0.8900 -0.5138 23 1 1.9972 -1.8772 -0.8891 24 1 1.9970 -1.8763 0.8908 25 1 3.8827 -0.9987 2.1351 26 1 6.8693 -1.4918 2.8518 27 1 7.3506 0.1656 2.4165 28 1 5.8235 -0.1184 3.2857 29 1 7.5397 -0.3224 0.0524 30 1 9.2668 0.7366 -3.5125 31 1 3.8859 -1.0037 -2.1274 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307494628.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:27 Heat of formation + Delta-G solvation = -37.778551 kcal Electronic energy + Delta-G solvation = -14201.631382 eV Core-core repulsion = 11833.095799 eV Total energy + Delta-G solvation = -2368.535583 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.24257 -37.71609 -33.76185 -32.69486 -31.25131 -30.16645 -26.95774 -25.71349 -25.06713 -20.87807 -19.80539 -18.99428 -17.01670 -15.63141 -15.39247 -15.13531 -14.65162 -14.51217 -13.99157 -13.03212 -12.92244 -12.70588 -12.29675 -12.26937 -11.99382 -11.71195 -11.66754 -11.28537 -11.17362 -10.71087 -10.46680 -10.13051 -9.73453 -9.53763 -9.34647 -9.00228 -7.47676 -7.39746 -6.87448 -4.41394 2.34613 2.63094 2.67550 3.16933 3.27799 3.42127 4.07334 4.33984 4.65292 5.18812 5.35948 5.38997 5.43895 5.64357 5.71175 5.91448 5.92866 6.02721 6.19386 6.24905 6.32705 6.48063 6.60716 6.75487 7.03030 7.28444 7.51481 7.70135 7.80603 7.91879 7.95844 8.18235 8.42517 8.73776 8.88870 10.15330 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.030017 B = 0.009625 C = 0.008465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.584530 B = 2908.289809 C = 3307.070139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.347 3.653 3 O -0.441 6.441 4 C -0.126 4.126 5 C -0.047 4.047 6 C -0.226 4.226 7 C -0.053 4.053 8 C -0.108 4.108 9 C -0.233 4.233 10 C 0.096 3.904 11 C -0.452 4.452 12 H 0.089 0.911 13 C 0.086 3.914 14 N -0.813 5.813 15 Si 0.906 3.094 16 H -0.271 1.271 17 H -0.292 1.292 18 H -0.242 1.242 19 C -0.196 4.196 20 H 0.089 0.911 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.284 0.716 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.734 -1.720 7.224 12.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.221 3.779 3 O -0.313 6.313 4 C -0.163 4.163 5 C -0.048 4.048 6 C -0.245 4.245 7 C -0.053 4.053 8 C -0.165 4.165 9 C -0.252 4.252 10 C 0.093 3.907 11 C -0.480 4.480 12 H 0.107 0.893 13 C -0.132 4.132 14 N -0.438 5.438 15 Si 0.733 3.267 16 H -0.197 1.197 17 H -0.219 1.219 18 H -0.165 1.165 19 C -0.215 4.215 20 H 0.108 0.892 21 H 0.098 0.902 22 H 0.100 0.900 23 H 0.115 0.885 24 H 0.113 0.887 25 H 0.108 0.892 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.094 0.906 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.185 -1.101 7.030 11.619 hybrid contribution 0.231 0.463 0.388 0.647 sum -8.954 -0.638 7.418 11.645 Atomic orbital electron populations 1.22306 0.95291 1.04315 1.04074 1.24632 0.91153 0.90822 0.71271 1.90452 1.71832 1.34940 1.34046 1.21106 0.94434 0.96877 1.03880 1.18948 0.91974 0.99773 0.94056 1.20008 0.93729 1.15356 0.95390 1.19367 0.93766 0.98211 0.93923 1.20717 0.99485 1.00954 0.95309 1.20901 0.98205 1.13791 0.92337 1.17666 0.91326 0.89064 0.92625 1.19440 1.07306 1.24496 0.96803 0.89296 1.26100 0.93439 0.97668 0.95981 1.69701 1.09037 1.34420 1.30638 0.86380 0.80678 0.79323 0.80305 1.19732 1.21925 1.16517 1.20792 0.94003 1.11460 0.95273 0.89221 0.90157 0.89972 0.88483 0.88711 0.89241 0.92236 0.92782 0.92721 0.88310 0.90613 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.08 10.25 36.01 0.37 -1.71 16 2 C 0.35 5.44 7.26 -29.03 -0.21 5.23 16 3 O -0.44 -9.23 16.77 6.00 0.10 -9.13 16 4 C -0.13 -1.95 5.75 -29.03 -0.17 -2.12 16 5 C -0.05 -1.01 4.37 -104.70 -0.46 -1.47 16 6 C -0.23 -4.88 9.36 -39.29 -0.37 -5.25 16 7 C -0.05 -1.20 5.87 -104.71 -0.61 -1.81 16 8 C -0.11 -1.98 10.00 36.01 0.36 -1.62 16 9 C -0.23 -5.93 6.82 -38.87 -0.27 -6.19 16 10 C 0.10 2.56 5.10 -106.82 -0.55 2.02 16 11 C -0.45 -12.76 9.57 -37.74 -0.36 -13.12 16 12 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 13 C 0.09 2.37 5.40 -17.34 -0.09 2.28 16 14 N -0.81 -22.50 13.93 55.55 0.77 -21.73 16 15 Si 0.91 22.11 24.52 -169.99 -4.17 17.95 16 16 H -0.27 -6.35 6.71 56.52 0.38 -5.97 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.24 -6.23 6.86 56.52 0.39 -5.84 16 19 C -0.20 -4.75 9.44 -38.87 -0.37 -5.12 16 20 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 23 H 0.10 1.31 8.08 -51.93 -0.42 0.89 16 24 H 0.09 1.21 8.08 -51.93 -0.42 0.79 16 25 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 28 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 29 H 0.10 2.51 4.74 -52.49 -0.25 2.27 16 30 H 0.28 7.12 8.30 -40.82 -0.34 6.78 16 31 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 267.17 15.07 4.03 4.03 Total: -1.00 -31.45 267.17 -6.04 -37.49 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -4.06 Total: 0.28 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: -2.72 Total: -28.88 kcal Atomic # 7 Polarization: -22.50 SS G_CDS: 0.77 Total: -21.73 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.10 Total: -9.13 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.17 Total: 17.95 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.45 -6.04 -37.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307494628.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.290 kcal (2) G-P(sol) polarization free energy of solvation -31.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds