Wall clock time and date at job start Mon Mar 30 2020 03:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.20755 * 120.00135 * 2 1 4 4 C 1.50700 * 119.99706 * 179.97438 * 2 1 3 5 5 C 1.50703 * 109.46968 * 180.02562 * 4 2 1 6 6 C 1.38657 * 119.87809 * 89.99837 * 5 4 2 7 7 C 1.38611 * 120.50044 * 180.02562 * 6 5 4 8 8 C 1.50701 * 119.87113 * 179.97438 * 7 6 5 9 9 C 1.37630 * 120.24959 * 0.02562 * 7 6 5 10 10 C 1.40701 * 119.74550 * 359.97438 * 9 7 6 11 11 C 1.41394 * 120.24317 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00031 * 150.21267 * 11 10 9 13 13 C 1.39951 * 120.00182 * 330.21617 * 11 10 9 14 14 N 1.30825 * 119.99811 * 161.72502 * 13 11 10 15 15 Si 1.86794 * 120.00030 * 341.71938 * 13 11 10 16 16 H 1.48504 * 109.47014 * 95.41062 * 15 13 11 17 17 H 1.48494 * 109.47477 * 215.41191 * 15 13 11 18 18 H 1.48508 * 109.47234 * 335.41405 * 15 13 11 19 19 C 1.37592 * 119.87171 * 270.02130 * 5 4 2 20 20 H 1.08994 * 109.47370 * 270.00567 * 1 2 3 21 21 H 1.09005 * 109.46354 * 30.00681 * 1 2 3 22 22 H 1.09002 * 109.46937 * 150.00174 * 1 2 3 23 23 H 1.09003 * 109.47399 * 60.00003 * 4 2 1 24 24 H 1.09003 * 109.46955 * 300.00454 * 4 2 1 25 25 H 1.07998 * 119.74561 * 359.74555 * 6 5 4 26 26 H 1.09000 * 109.46628 * 90.00500 * 8 7 6 27 27 H 1.09004 * 109.47231 * 209.99680 * 8 7 6 28 28 H 1.08991 * 109.47662 * 330.00646 * 8 7 6 29 29 H 1.08001 * 120.12999 * 180.02562 * 9 7 6 30 30 H 0.97002 * 119.99668 * 180.02562 * 14 13 11 31 31 H 1.08003 * 120.13471 * 359.95308 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7422 -1.0298 0.0011 6 6 4.4208 -0.9033 1.2036 7 6 5.7834 -0.6495 1.2191 8 6 6.5067 -0.5141 2.5343 9 6 6.4780 -0.5198 0.0381 10 6 5.7997 -0.6462 -1.1882 11 6 6.5030 -0.5153 -2.4078 12 1 6.1684 -1.0504 -3.2842 13 6 7.6329 0.3075 -2.4793 14 7 8.4835 0.1665 -3.4632 15 14 7.9263 1.6070 -1.1699 16 1 8.8356 1.0642 -0.1288 17 1 8.5449 2.8053 -1.7916 18 1 6.6315 1.9845 -0.5482 19 6 4.4163 -0.9044 -1.1918 20 1 -0.3634 0.0001 1.0276 21 1 -0.3632 0.8900 -0.5140 22 1 -0.3633 -0.8900 -0.5138 23 1 1.9972 -1.8772 -0.8891 24 1 1.9970 -1.8763 0.8908 25 1 3.8827 -0.9987 2.1351 26 1 6.8693 -1.4918 2.8518 27 1 7.3506 0.1656 2.4165 28 1 5.8235 -0.1184 3.2857 29 1 7.5397 -0.3224 0.0524 30 1 9.2668 0.7366 -3.5125 31 1 3.8859 -1.0037 -2.1274 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307494628.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:27 Heat of formation + Delta-G solvation = -57.503663 kcal Electronic energy + Delta-G solvation = -14202.486727 eV Core-core repulsion = 11833.095799 eV Total energy + Delta-G solvation = -2369.390928 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.67795 -39.41648 -35.73226 -34.26105 -33.07033 -31.35885 -28.35825 -27.36211 -26.99487 -22.62348 -21.54392 -20.36583 -18.97236 -17.52679 -16.66850 -16.57697 -16.30617 -16.01845 -15.59958 -14.82925 -14.49082 -14.41409 -13.77155 -13.58249 -13.26854 -13.17269 -13.04654 -12.94793 -12.76478 -12.49992 -12.23472 -11.96502 -11.61026 -11.42527 -11.06958 -10.54067 -9.37669 -9.17801 -8.92869 -6.52087 0.78374 0.81269 1.16382 1.18866 1.33934 1.43359 2.09029 2.54084 3.27159 3.61525 3.94303 4.18054 4.37073 4.41353 4.51765 4.57257 4.75323 4.76457 4.82267 4.84289 4.86850 4.94318 5.05646 5.13898 5.27475 5.40733 5.68729 5.85654 5.89710 6.04627 6.25271 6.41986 6.74810 6.75724 6.85738 8.16267 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.030017 B = 0.009625 C = 0.008465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.584530 B = 2908.289809 C = 3307.070139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.351 3.649 3 O -0.507 6.507 4 C -0.129 4.129 5 C -0.046 4.046 6 C -0.218 4.218 7 C -0.064 4.064 8 C -0.106 4.106 9 C -0.255 4.255 10 C 0.071 3.929 11 C -0.491 4.491 12 H 0.056 0.944 13 C 0.051 3.949 14 N -0.852 5.852 15 Si 0.960 3.040 16 H -0.255 1.255 17 H -0.275 1.275 18 H -0.266 1.266 19 C -0.220 4.220 20 H 0.117 0.883 21 H 0.078 0.922 22 H 0.114 0.886 23 H 0.121 0.879 24 H 0.137 0.863 25 H 0.127 0.873 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.293 0.707 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.956 -2.167 10.236 15.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.229 3.771 3 O -0.384 6.384 4 C -0.166 4.166 5 C -0.046 4.046 6 C -0.237 4.237 7 C -0.064 4.064 8 C -0.163 4.163 9 C -0.274 4.274 10 C 0.069 3.931 11 C -0.521 4.521 12 H 0.074 0.926 13 C -0.163 4.163 14 N -0.479 5.479 15 Si 0.785 3.215 16 H -0.180 1.180 17 H -0.201 1.201 18 H -0.191 1.191 19 C -0.239 4.239 20 H 0.135 0.865 21 H 0.097 0.903 22 H 0.132 0.868 23 H 0.139 0.861 24 H 0.154 0.846 25 H 0.145 0.855 26 H 0.100 0.900 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.417 -1.577 10.042 15.286 hybrid contribution 0.710 0.470 -0.420 0.950 sum -10.707 -1.107 9.622 14.437 Atomic orbital electron populations 1.22280 0.90468 1.05848 1.06177 1.25320 0.93699 0.89475 0.68592 1.90458 1.73528 1.36846 1.37545 1.21320 0.90201 0.98019 1.07068 1.19560 0.95386 0.96919 0.92743 1.20612 0.93579 1.12519 0.97005 1.19957 0.94770 0.96692 0.94979 1.20784 0.99686 1.02481 0.93341 1.21008 0.98222 1.15101 0.93046 1.17889 0.92624 0.89984 0.92621 1.19452 1.09266 1.26572 0.96808 0.92592 1.26680 0.93082 0.98771 0.97722 1.69718 1.09989 1.35928 1.32223 0.85567 0.79580 0.77792 0.78602 1.18007 1.20136 1.19070 1.21007 0.93520 1.12503 0.96866 0.86532 0.90347 0.86764 0.86147 0.84564 0.85472 0.89986 0.92835 0.90112 0.89016 0.89691 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.03 10.25 71.24 0.73 -2.30 16 2 C 0.35 9.88 7.26 29.10 0.21 10.09 16 3 O -0.51 -20.65 16.77 -1.44 -0.02 -20.67 16 4 C -0.13 -3.50 5.75 29.10 0.17 -3.34 16 5 C -0.05 -1.87 4.37 -19.92 -0.09 -1.96 16 6 C -0.22 -8.74 9.36 22.46 0.21 -8.53 16 7 C -0.06 -2.78 5.87 -19.92 -0.12 -2.90 16 8 C -0.11 -3.53 10.00 71.24 0.71 -2.81 16 9 C -0.25 -13.03 6.82 22.73 0.15 -12.88 16 10 C 0.07 3.93 5.10 -21.29 -0.11 3.82 16 11 C -0.49 -29.60 9.57 23.46 0.22 -29.37 16 12 H 0.06 3.58 8.06 -2.91 -0.02 3.55 16 13 C 0.05 2.96 5.40 85.26 0.46 3.42 16 14 N -0.85 -49.33 13.93 21.83 0.30 -49.03 16 15 Si 0.96 46.96 24.52 68.60 1.68 48.64 16 16 H -0.25 -11.62 6.71 99.48 0.67 -10.95 16 17 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.27 -13.91 6.86 99.48 0.68 -13.22 16 19 C -0.22 -10.84 9.44 22.73 0.21 -10.62 16 20 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 22 H 0.11 1.12 8.12 -2.39 -0.02 1.10 16 23 H 0.12 2.76 8.08 -2.39 -0.02 2.74 16 24 H 0.14 2.62 8.08 -2.39 -0.02 2.60 16 25 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 26 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.05 1.78 8.08 -2.38 -0.02 1.76 16 28 H 0.08 2.25 8.08 -2.39 -0.02 2.23 16 29 H 0.09 4.72 4.74 -2.91 -0.01 4.71 16 30 H 0.29 15.23 8.30 -92.71 -0.77 14.46 16 31 H 0.09 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -73.42 267.17 5.78 -67.64 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.05 Total: 10.80 kcal Atomic # 6 Polarization: -60.16 SS G_CDS: 2.77 Total: -57.38 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.30 Total: -49.03 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.02 Total: -20.67 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.68 Total: 48.64 kcal Total: -73.42 5.78 -67.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307494628.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.135 kcal (2) G-P(sol) polarization free energy of solvation -73.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds