Wall clock time and date at job start Mon Mar 30 2020 03:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35726 * 117.00272 * 2 1 4 4 C 1.39193 * 119.84197 * 0.02562 * 3 2 1 5 5 C 1.36549 * 120.16016 * 179.71882 * 4 3 2 6 6 C 1.40514 * 119.83304 * 0.53669 * 5 4 3 7 7 C 1.46151 * 120.15108 * 179.74231 * 6 5 4 8 8 C 1.38267 * 120.00032 * 330.91244 * 7 6 5 9 9 C 1.38779 * 120.00177 * 351.84336 * 8 7 6 10 10 H 1.08001 * 120.00030 * 343.79961 * 9 8 7 11 11 C 1.40585 * 120.00250 * 163.80412 * 9 8 7 12 12 N 1.30590 * 119.99842 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00298 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47245 * 59.99282 * 13 11 9 15 15 H 1.48499 * 109.47363 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47040 * 299.99778 * 13 11 9 17 17 C 1.40468 * 119.69087 * 359.46992 * 6 5 4 18 18 C 1.36580 * 119.83823 * 0.25092 * 17 6 5 19 19 C 1.50704 * 119.92060 * 180.02562 * 18 17 6 20 20 H 1.09003 * 109.47321 * 60.00145 * 1 2 3 21 21 H 1.09000 * 109.47563 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46914 * 300.00462 * 1 2 3 23 23 H 1.07997 * 119.92489 * 359.97438 * 4 3 2 24 24 H 1.08002 * 120.08316 * 180.25850 * 5 4 3 25 25 H 1.07998 * 120.00034 * 150.91517 * 7 6 5 26 26 H 1.08005 * 120.00059 * 172.12234 * 8 7 6 27 27 H 0.96996 * 119.99941 * 180.02562 * 12 11 9 28 28 H 1.08002 * 120.08112 * 180.27251 * 17 6 5 29 29 H 1.09001 * 109.46984 * 89.99532 * 19 18 17 30 30 H 1.09000 * 109.47077 * 209.99873 * 19 18 17 31 31 H 1.09000 * 109.46825 * 330.00034 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2839 2.3746 0.0005 5 6 1.8971 3.5947 0.0063 6 6 3.3001 3.6719 0.0003 7 6 3.9637 4.9741 0.0008 8 6 3.3427 6.0666 -0.5757 9 6 2.1720 5.8965 -1.3014 10 1 1.8847 4.9119 -1.6399 11 6 1.3600 7.0057 -1.5959 12 7 1.7071 8.1961 -1.1863 13 14 -0.2161 6.7766 -2.5720 14 1 -1.1211 5.8533 -1.8414 15 1 -0.8858 8.0905 -2.7465 16 1 0.1054 6.2036 -3.9038 17 6 4.0619 2.4917 -0.0003 18 6 3.4351 1.2783 -0.0003 19 6 4.2505 0.0109 -0.0004 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.2057 2.3138 0.0005 24 1 1.3052 4.4980 0.0110 25 1 4.9391 5.0830 0.4514 26 1 3.7711 7.0519 -0.4652 27 1 1.1467 8.9614 -1.3892 28 1 5.1407 2.5437 -0.0004 29 1 4.4473 -0.2946 1.0273 30 1 3.6987 -0.7762 -0.5142 31 1 5.1955 0.1870 -0.5143 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308460184.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:23 Heat of formation + Delta-G solvation = -32.193539 kcal Electronic energy + Delta-G solvation = -14096.595174 eV Core-core repulsion = 11728.301776 eV Total energy + Delta-G solvation = -2368.293398 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.86915 -38.43457 -36.38237 -34.17613 -32.76165 -30.38538 -28.42221 -27.20955 -26.82844 -22.98896 -22.55096 -20.35544 -19.12181 -18.36348 -17.02759 -16.75449 -16.49097 -15.68578 -15.13165 -14.79602 -14.36984 -14.22491 -14.07470 -13.78822 -13.13616 -13.06190 -12.91506 -12.68584 -12.54658 -12.39099 -11.92970 -11.81819 -11.50433 -11.34917 -11.06072 -10.07329 -9.48835 -8.90711 -8.51216 -6.27424 0.52794 0.74043 1.30375 1.33509 1.45990 1.92524 2.12577 2.62965 3.01931 3.46287 4.07429 4.13530 4.40451 4.45463 4.52650 4.68968 4.73691 4.82766 4.89698 4.90800 4.96240 5.05293 5.17167 5.19833 5.49329 5.60418 5.72770 5.91151 6.04108 6.19321 6.33912 6.48558 6.76601 6.87191 7.05885 8.12890 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.030873 B = 0.008704 C = 0.007058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.734663 B = 3216.253690 C = 3965.944352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.331 6.331 3 C 0.055 3.945 4 C -0.193 4.193 5 C -0.138 4.138 6 C 0.000 4.000 7 C -0.421 4.421 8 C 0.051 3.949 9 C -0.453 4.453 10 H 0.090 0.910 11 C 0.031 3.969 12 N -0.823 5.823 13 Si 0.981 3.019 14 H -0.253 1.253 15 H -0.259 1.259 16 H -0.257 1.257 17 C -0.148 4.148 18 C -0.114 4.114 19 C -0.092 4.092 20 H 0.052 0.948 21 H 0.123 0.877 22 H 0.053 0.947 23 H 0.133 0.867 24 H 0.123 0.877 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.299 0.701 28 H 0.121 0.879 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.857 -10.341 -0.279 11.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.245 6.245 3 C 0.010 3.990 4 C -0.211 4.211 5 C -0.156 4.156 6 C -0.001 4.001 7 C -0.442 4.442 8 C 0.030 3.970 9 C -0.480 4.480 10 H 0.107 0.893 11 C -0.187 4.187 12 N -0.447 5.447 13 Si 0.800 3.200 14 H -0.177 1.177 15 H -0.183 1.183 16 H -0.181 1.181 17 C -0.166 4.166 18 C -0.115 4.115 19 C -0.149 4.149 20 H 0.070 0.930 21 H 0.141 0.859 22 H 0.072 0.928 23 H 0.151 0.849 24 H 0.141 0.859 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.110 0.890 28 H 0.139 0.861 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.830 -10.244 -0.271 11.329 hybrid contribution -0.483 0.831 -0.212 0.985 sum -5.313 -9.413 -0.483 10.819 Atomic orbital electron populations 1.23200 0.77681 1.04988 1.01378 1.85878 1.22325 1.26530 1.89807 1.18848 0.91866 0.84109 1.04142 1.20998 0.99964 0.92143 1.08008 1.21338 0.95012 0.97391 1.01858 1.19002 0.92728 0.93249 0.95079 1.21072 1.03465 0.93743 1.25943 1.20496 0.93151 0.94283 0.89078 1.20059 1.05888 0.95658 1.26424 0.89256 1.27236 1.03380 0.93685 0.94374 1.69554 1.38519 1.01000 1.35668 0.85246 0.76212 0.79449 0.79083 1.17683 1.18327 1.18132 1.20873 0.99270 0.90976 1.05477 1.19106 0.91008 0.96410 1.04956 1.20546 0.98582 0.93334 1.02394 0.92966 0.85928 0.92787 0.84882 0.85906 0.90737 0.91772 0.88968 0.86083 0.91015 0.91336 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.80 113.37 1.11 1.63 16 2 O -0.33 -10.81 9.51 -90.49 -0.86 -11.67 16 3 C 0.05 2.11 6.68 22.72 0.15 2.26 16 4 C -0.19 -7.77 8.97 22.10 0.20 -7.58 16 5 C -0.14 -6.49 7.51 22.43 0.17 -6.32 16 6 C 0.00 -0.01 5.50 -20.13 -0.11 -0.12 16 7 C -0.42 -22.38 9.99 24.33 0.24 -22.14 16 8 C 0.05 2.82 9.34 22.41 0.21 3.03 16 9 C -0.45 -24.05 6.50 22.97 0.15 -23.90 16 10 H 0.09 4.73 5.37 -2.91 -0.02 4.71 16 11 C 0.03 1.53 5.51 85.45 0.47 2.00 16 12 N -0.82 -41.48 12.92 21.95 0.28 -41.20 16 13 Si 0.98 36.64 29.57 68.60 2.03 38.67 16 14 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 15 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 16 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 17 C -0.15 -6.39 9.40 22.43 0.21 -6.18 16 18 C -0.11 -4.43 5.86 -20.03 -0.12 -4.55 16 19 C -0.09 -2.75 9.78 71.24 0.70 -2.05 16 20 H 0.05 1.20 7.65 -2.39 -0.02 1.18 16 21 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.05 1.22 7.65 -2.38 -0.02 1.20 16 23 H 0.13 4.56 6.27 -2.91 -0.02 4.54 16 24 H 0.12 6.11 5.65 -2.91 -0.02 6.10 16 25 H 0.07 3.84 8.06 -2.91 -0.02 3.82 16 26 H 0.06 3.67 7.53 -2.91 -0.02 3.65 16 27 H 0.30 13.40 8.29 -92.71 -0.77 12.63 16 28 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.07 1.94 7.52 -2.39 -0.02 1.92 16 31 H 0.07 1.90 8.08 -2.39 -0.02 1.88 16 Total: -1.00 -59.13 264.55 5.95 -53.18 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 1.12 Total: 24.94 kcal Atomic # 6 Polarization: -67.30 SS G_CDS: 3.38 Total: -63.92 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.28 Total: -41.20 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.86 Total: -11.67 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 2.03 Total: 38.67 kcal Total: -59.13 5.95 -53.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308460184.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.986 kcal (2) G-P(sol) polarization free energy of solvation -59.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds