Wall clock time and date at job start Mon Mar 30 2020 02:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00046 * 2 1 4 4 H 1.48500 * 109.47207 * 269.99787 * 3 2 1 5 5 H 1.48497 * 109.47187 * 30.00163 * 3 2 1 6 6 H 1.48500 * 109.47002 * 150.00379 * 3 2 1 7 7 C 1.37878 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00112 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47138 * 179.97438 * 10 9 7 12 12 C 1.32614 * 120.00297 * 124.99817 * 11 10 9 13 13 C 1.47726 * 119.99922 * 179.97438 * 12 11 10 14 14 C 1.39509 * 120.17416 * 0.02562 * 13 12 11 15 15 C 1.37952 * 119.91151 * 179.97438 * 14 13 12 16 16 C 1.38415 * 120.26237 * 0.02562 * 15 14 13 17 17 C 1.38200 * 120.34611 * 359.97309 * 16 15 14 18 18 C 1.38543 * 120.08344 * 0.02562 * 17 16 15 19 19 O 1.35831 * 120.13072 * 179.97438 * 18 17 16 20 20 H 0.97006 * 120.00099 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47273 * 59.99886 * 9 7 2 22 22 H 1.08997 * 109.46910 * 299.99643 * 9 7 2 23 23 H 1.08998 * 109.47198 * 59.99758 * 10 9 7 24 24 H 1.08997 * 109.46862 * 299.99591 * 10 9 7 25 25 H 1.08005 * 119.99776 * 304.99499 * 11 10 9 26 26 H 1.08000 * 119.99466 * 0.02562 * 12 11 10 27 27 H 1.07997 * 120.04198 * 359.97438 * 14 13 12 28 28 H 1.07996 * 119.87177 * 180.02562 * 15 14 13 29 29 H 1.07999 * 119.82942 * 179.69945 * 16 15 14 30 30 H 1.08004 * 119.95715 * 180.02562 * 17 16 15 31 31 H 0.96699 * 113.99836 * 270.03441 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4917 -4.9672 -0.0020 12 6 1.7310 -5.8707 -0.9428 13 6 0.9927 -7.1502 -0.9429 14 6 0.0426 -7.4117 0.0446 15 6 -0.6441 -8.6081 0.0391 16 6 -0.3940 -9.5513 -0.9426 17 6 0.5448 -9.3035 -1.9260 18 6 1.2427 -8.1068 -1.9341 19 8 2.1660 -7.8624 -2.8999 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5563 -0.8919 22 1 0.6240 -2.5574 0.8880 23 1 2.8712 -3.6048 0.8890 24 1 2.8725 -3.6040 -0.8910 25 1 0.7568 -5.1667 0.7639 26 1 2.4662 -5.6713 -1.7084 27 1 -0.1550 -6.6784 0.8125 28 1 -1.3797 -8.8097 0.8036 29 1 -0.9322 -10.4877 -0.9375 30 1 0.7347 -10.0438 -2.6892 31 1 3.0596 -8.1539 -2.6726 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389009921.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:49 Heat of formation + Delta-G solvation = -22.732335 kcal Electronic energy + Delta-G solvation = -13364.425054 eV Core-core repulsion = 10996.541924 eV Total energy + Delta-G solvation = -2367.883130 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.70011 -36.63672 -35.33168 -33.09363 -31.20353 -29.87281 -28.26548 -25.02549 -23.03306 -22.17450 -20.63293 -18.95391 -18.27069 -16.30927 -16.26343 -15.54622 -15.13396 -14.47266 -14.08586 -13.86029 -13.09001 -12.77005 -12.46232 -12.16640 -11.89636 -11.83049 -11.27281 -10.97704 -10.74595 -10.56737 -10.35779 -10.15414 -9.72761 -9.40064 -9.09363 -8.74927 -8.34995 -7.69699 -5.99686 -4.02638 1.03429 1.30982 2.83508 3.32645 3.38693 3.41980 3.84154 4.26434 4.46367 4.86377 4.92150 5.03318 5.32282 5.36050 5.48467 5.55117 5.82798 5.97558 6.14761 6.26995 6.30871 6.47534 6.54696 6.63242 6.82635 6.93662 7.14696 7.26894 7.66945 7.68825 7.81507 7.99862 8.41177 9.04250 9.61478 11.11555 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.055320 B = 0.004729 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.023151 B = 5919.214753 C = 6211.089071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.026 3.974 10 C -0.093 4.093 11 C -0.095 4.095 12 C -0.166 4.166 13 C -0.054 4.054 14 C -0.110 4.110 15 C -0.124 4.124 16 C -0.121 4.121 17 C -0.144 4.144 18 C 0.100 3.900 19 O -0.494 6.494 20 H 0.261 0.739 21 H 0.018 0.982 22 H 0.017 0.983 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.107 0.893 26 H 0.119 0.881 27 H 0.130 0.870 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.663 -17.974 -0.800 18.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.130 4.130 11 C -0.113 4.113 12 C -0.184 4.184 13 C -0.054 4.054 14 C -0.128 4.128 15 C -0.142 4.142 16 C -0.139 4.139 17 C -0.162 4.162 18 C 0.055 3.945 19 O -0.303 6.303 20 H 0.070 0.930 21 H 0.036 0.964 22 H 0.036 0.964 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.124 0.876 26 H 0.137 0.863 27 H 0.148 0.852 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 1.036 -17.613 -1.106 17.678 hybrid contribution 0.728 0.744 0.155 1.052 sum 1.764 -16.869 -0.951 16.988 Atomic orbital electron populations 1.69967 1.06085 1.26635 1.50744 1.25028 0.94848 0.99280 0.95276 0.86583 0.79825 0.83409 0.78125 1.20641 1.21210 1.19853 1.21257 0.93063 0.91004 1.50748 0.92599 1.19063 0.93863 0.90742 0.97468 1.20937 0.98767 0.92209 1.01067 1.23859 0.96572 0.94881 0.95969 1.21428 1.02746 0.92834 1.01395 1.19537 0.97088 0.95046 0.93778 1.21318 0.95685 0.97331 0.98504 1.21082 1.00003 0.94016 0.99094 1.20981 0.98377 0.99524 0.94997 1.21307 0.98778 0.96551 0.99602 1.18524 0.93911 0.92848 0.89191 1.84808 1.20536 1.84494 1.40495 0.92971 0.96400 0.96447 0.91744 0.92503 0.87559 0.86288 0.85203 0.85907 0.86013 0.85745 0.75835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.67 4.96 -27.88 -0.14 0.53 16 10 C -0.09 -1.93 5.60 -27.88 -0.16 -2.09 16 11 C -0.09 -1.70 8.94 -36.21 -0.32 -2.02 16 12 C -0.17 -2.76 9.26 -37.61 -0.35 -3.11 16 13 C -0.05 -0.82 5.88 -104.89 -0.62 -1.43 16 14 C -0.11 -1.52 9.40 -39.21 -0.37 -1.89 16 15 C -0.12 -1.44 10.03 -39.62 -0.40 -1.84 16 16 C -0.12 -1.32 10.03 -39.53 -0.40 -1.71 16 17 C -0.14 -1.70 9.97 -39.48 -0.39 -2.09 16 18 C 0.10 1.38 6.71 -38.81 -0.26 1.12 16 19 O -0.49 -6.30 12.69 -19.21 -0.24 -6.55 16 20 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 21 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 24 H 0.06 1.16 7.81 -51.93 -0.41 0.76 16 25 H 0.11 1.78 6.04 -52.48 -0.32 1.46 16 26 H 0.12 1.95 7.45 -52.49 -0.39 1.56 16 27 H 0.13 1.70 6.17 -52.49 -0.32 1.38 16 28 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 29 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 31 H 0.39 3.04 9.06 45.56 0.41 3.45 16 LS Contribution 273.36 15.07 4.12 4.12 Total: -1.00 -32.11 273.36 -7.32 -39.43 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -3.10 Total: 0.96 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: -3.81 Total: -28.24 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.47 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.24 Total: -6.55 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.11 -7.32 -39.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389009921.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.696 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds