Wall clock time and date at job start Mon Mar 30 2020 02:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00046 * 2 1 4 4 H 1.48500 * 109.47207 * 269.99787 * 3 2 1 5 5 H 1.48497 * 109.47187 * 30.00163 * 3 2 1 6 6 H 1.48500 * 109.47002 * 150.00379 * 3 2 1 7 7 C 1.37878 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00112 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47138 * 179.97438 * 10 9 7 12 12 C 1.32614 * 120.00297 * 124.99817 * 11 10 9 13 13 C 1.47726 * 119.99922 * 179.97438 * 12 11 10 14 14 C 1.39509 * 120.17416 * 0.02562 * 13 12 11 15 15 C 1.37952 * 119.91151 * 179.97438 * 14 13 12 16 16 C 1.38415 * 120.26237 * 0.02562 * 15 14 13 17 17 C 1.38200 * 120.34611 * 359.97309 * 16 15 14 18 18 C 1.38543 * 120.08344 * 0.02562 * 17 16 15 19 19 O 1.35831 * 120.13072 * 179.97438 * 18 17 16 20 20 H 0.97006 * 120.00099 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47273 * 59.99886 * 9 7 2 22 22 H 1.08997 * 109.46910 * 299.99643 * 9 7 2 23 23 H 1.08998 * 109.47198 * 59.99758 * 10 9 7 24 24 H 1.08997 * 109.46862 * 299.99591 * 10 9 7 25 25 H 1.08005 * 119.99776 * 304.99499 * 11 10 9 26 26 H 1.08000 * 119.99466 * 0.02562 * 12 11 10 27 27 H 1.07997 * 120.04198 * 359.97438 * 14 13 12 28 28 H 1.07996 * 119.87177 * 180.02562 * 15 14 13 29 29 H 1.07999 * 119.82942 * 179.69945 * 16 15 14 30 30 H 1.08004 * 119.95715 * 180.02562 * 17 16 15 31 31 H 0.96699 * 113.99836 * 270.03441 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4917 -4.9672 -0.0020 12 6 1.7310 -5.8707 -0.9428 13 6 0.9927 -7.1502 -0.9429 14 6 0.0426 -7.4117 0.0446 15 6 -0.6441 -8.6081 0.0391 16 6 -0.3940 -9.5513 -0.9426 17 6 0.5448 -9.3035 -1.9260 18 6 1.2427 -8.1068 -1.9341 19 8 2.1660 -7.8624 -2.8999 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5563 -0.8919 22 1 0.6240 -2.5574 0.8880 23 1 2.8712 -3.6048 0.8890 24 1 2.8725 -3.6040 -0.8910 25 1 0.7568 -5.1667 0.7639 26 1 2.4662 -5.6713 -1.7084 27 1 -0.1550 -6.6784 0.8125 28 1 -1.3797 -8.8097 0.8036 29 1 -0.9322 -10.4877 -0.9375 30 1 0.7347 -10.0438 -2.6892 31 1 3.0596 -8.1539 -2.6726 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389009921.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:49 Heat of formation + Delta-G solvation = -42.679605 kcal Electronic energy + Delta-G solvation = -13365.290032 eV Core-core repulsion = 10996.541924 eV Total energy + Delta-G solvation = -2368.748108 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.68857 -37.63216 -36.86521 -34.98885 -32.81299 -30.86885 -29.77969 -26.82467 -24.28277 -23.41068 -22.23574 -20.28494 -19.27045 -18.43434 -17.32508 -16.62519 -16.51554 -16.13979 -15.34063 -14.85315 -14.69393 -14.53831 -13.78647 -13.56488 -13.31033 -13.00189 -12.91244 -12.70583 -12.47792 -12.07477 -11.85305 -11.66470 -11.34577 -11.13871 -10.91402 -10.56801 -9.70727 -8.91488 -8.20827 -6.33155 -0.03924 0.36381 1.39953 1.41837 1.52876 1.62039 2.40882 2.84934 3.12013 3.33761 3.77425 3.90115 4.14099 4.29351 4.36003 4.52910 4.60906 4.73068 4.84358 4.96722 5.06990 5.09799 5.34285 5.42761 5.48169 5.54951 5.61441 5.78175 5.82259 5.93070 5.97301 6.22359 6.83636 6.86473 7.36441 8.90961 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.055320 B = 0.004729 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.023151 B = 5919.214753 C = 6211.089071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.029 3.971 10 C -0.077 4.077 11 C -0.126 4.126 12 C -0.141 4.141 13 C -0.093 4.093 14 C -0.121 4.121 15 C -0.128 4.128 16 C -0.107 4.107 17 C -0.149 4.149 18 C 0.095 3.905 19 O -0.507 6.507 20 H 0.264 0.736 21 H -0.014 1.014 22 H -0.005 1.005 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.127 0.873 28 H 0.149 0.851 29 H 0.157 0.843 30 H 0.148 0.852 31 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.091 -19.451 -1.055 19.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.081 0.919 9 C -0.008 4.008 10 C -0.114 4.114 11 C -0.144 4.144 12 C -0.159 4.159 13 C -0.094 4.094 14 C -0.139 4.139 15 C -0.146 4.146 16 C -0.125 4.125 17 C -0.167 4.167 18 C 0.051 3.949 19 O -0.320 6.320 20 H 0.073 0.927 21 H 0.005 0.995 22 H 0.013 0.987 23 H 0.088 0.912 24 H 0.075 0.925 25 H 0.131 0.869 26 H 0.136 0.864 27 H 0.145 0.855 28 H 0.167 0.833 29 H 0.175 0.825 30 H 0.166 0.834 31 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 1.490 -19.110 -1.358 19.216 hybrid contribution 0.551 1.027 0.172 1.178 sum 2.041 -18.083 -1.186 18.236 Atomic orbital electron populations 1.70108 1.07926 1.27852 1.51582 1.26024 0.95784 1.03519 0.94579 0.85402 0.78698 0.78167 0.78508 1.19820 1.20620 1.18512 1.21724 0.93674 0.92273 1.50753 0.91910 1.18944 0.94309 0.92724 0.94798 1.20647 0.97648 0.91774 1.01337 1.23564 0.98353 0.94387 0.98049 1.21535 1.01455 0.93220 0.99663 1.19591 0.98861 0.95025 0.95878 1.21478 0.95834 0.98398 0.98175 1.21425 1.00012 0.93179 1.00009 1.21451 0.97159 1.00344 0.93540 1.21620 0.98443 0.96200 1.00432 1.18729 0.94282 0.93228 0.88698 1.84745 1.21859 1.84905 1.40497 0.92721 0.99530 0.98672 0.91214 0.92470 0.86898 0.86424 0.85521 0.83311 0.82495 0.83390 0.73515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.15 13.29 21.45 0.28 -57.86 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.55 -31.89 9.11 25.60 0.23 -31.66 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.61 4.96 29.85 0.15 1.76 16 10 C -0.08 -3.31 5.60 29.85 0.17 -3.14 16 11 C -0.13 -4.65 8.94 24.52 0.22 -4.43 16 12 C -0.14 -4.74 9.26 23.62 0.22 -4.52 16 13 C -0.09 -2.78 5.88 -20.04 -0.12 -2.89 16 14 C -0.12 -3.24 9.40 22.51 0.21 -3.02 16 15 C -0.13 -2.66 10.03 22.24 0.22 -2.44 16 16 C -0.11 -1.94 10.03 22.30 0.22 -1.72 16 17 C -0.15 -3.07 9.97 22.33 0.22 -2.85 16 18 C 0.10 2.48 6.71 22.77 0.15 2.63 16 19 O -0.51 -12.26 12.69 -91.65 -1.16 -13.42 16 20 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 21 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 22 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 23 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 24 H 0.06 2.40 7.81 -2.39 -0.02 2.38 16 25 H 0.11 3.95 6.04 -2.91 -0.02 3.94 16 26 H 0.12 3.89 7.45 -2.91 -0.02 3.87 16 27 H 0.13 3.35 6.17 -2.91 -0.02 3.33 16 28 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 29 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 30 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 31 H 0.41 5.79 9.06 -74.06 -0.67 5.12 16 Total: -1.00 -69.91 273.36 3.96 -65.95 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.45 Total: 10.35 kcal Atomic # 6 Polarization: -54.27 SS G_CDS: 2.36 Total: -51.90 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: 0.28 Total: -57.86 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -1.16 Total: -13.42 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -69.91 3.96 -65.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389009921.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.269 kcal (2) G-P(sol) polarization free energy of solvation -69.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds