Wall clock time and date at job start Mon Mar 30 2020 02:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99708 * 2 1 4 4 H 1.48502 * 109.47487 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47229 * 300.00405 * 3 2 1 6 6 H 1.48509 * 109.47259 * 59.99973 * 3 2 1 7 7 C 1.37869 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00009 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00359 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47288 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46884 * 179.97438 * 10 9 7 12 12 C 1.32614 * 119.99826 * 126.88524 * 11 10 9 13 13 C 1.47732 * 120.00050 * 6.88607 * 12 11 10 14 14 C 1.39501 * 120.17329 * 41.24980 * 13 12 11 15 15 C 1.37950 * 119.91366 * 179.69853 * 14 13 12 16 16 C 1.38417 * 120.25847 * 0.58115 * 15 14 13 17 17 C 1.38198 * 120.34613 * 359.71987 * 16 15 14 18 18 C 1.38551 * 120.08369 * 359.97438 * 17 16 15 19 19 O 1.35830 * 120.13303 * 180.02562 * 18 17 16 20 20 H 0.97001 * 120.00128 * 359.97438 * 1 2 3 21 21 H 1.09008 * 109.46378 * 300.00146 * 9 7 2 22 22 H 1.08997 * 109.47141 * 59.99146 * 9 7 2 23 23 H 1.08998 * 109.47198 * 299.99811 * 10 9 7 24 24 H 1.09000 * 109.47308 * 60.00050 * 10 9 7 25 25 H 1.08007 * 120.00123 * 306.89202 * 11 10 9 26 26 H 1.08000 * 119.99645 * 186.87823 * 12 11 10 27 27 H 1.08007 * 120.04409 * 0.02562 * 14 13 12 28 28 H 1.07997 * 119.87738 * 180.31937 * 15 14 13 29 29 H 1.08002 * 119.83055 * 179.73756 * 16 15 14 30 30 H 1.08001 * 119.95877 * 180.02562 * 17 16 15 31 31 H 0.96698 * 114.00207 * 269.98270 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 6 2.2455 -3.6620 -0.0027 11 6 1.4921 -4.9671 -0.0033 12 6 1.7573 -5.8854 -0.9225 13 6 2.8912 -5.6959 -1.8503 14 6 4.1027 -5.1870 -1.3822 15 6 5.1600 -5.0181 -2.2520 16 6 5.0201 -5.3404 -3.5908 17 6 3.8227 -5.8394 -4.0674 18 6 2.7535 -6.0207 -3.2051 19 8 1.5763 -6.5116 -3.6724 20 1 -0.4850 0.8400 0.0004 21 1 0.6242 -2.5574 0.8881 22 1 0.6248 -2.5563 -0.8919 23 1 2.8721 -3.6034 -0.8927 24 1 2.8722 -3.6050 0.8873 25 1 0.7360 -5.1545 0.7449 26 1 1.1443 -6.7719 -0.9928 27 1 4.2145 -4.9306 -0.3389 28 1 6.0993 -4.6289 -1.8879 29 1 5.8510 -5.2014 -4.2666 30 1 3.7206 -6.0892 -5.1132 31 1 0.9596 -5.8318 -3.9765 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394928629.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:52 Heat of formation + Delta-G solvation = -16.392024 kcal Electronic energy + Delta-G solvation = -13882.339794 eV Core-core repulsion = 11514.731601 eV Total energy + Delta-G solvation = -2367.608193 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.64186 -36.58124 -35.34538 -32.99272 -30.63818 -29.82145 -28.36219 -25.15418 -22.71299 -22.20021 -20.79804 -18.93685 -17.75896 -16.29683 -15.78643 -15.55133 -14.95843 -14.51788 -14.38832 -13.70781 -13.21646 -12.66268 -12.23209 -12.08361 -11.84165 -11.70126 -11.25632 -11.00460 -10.77597 -10.54134 -10.27243 -9.95679 -9.53396 -9.18856 -9.00834 -8.49626 -8.34010 -7.78795 -6.01084 -4.03494 1.27377 1.50597 2.78834 3.29903 3.37422 3.41592 3.88734 4.45162 4.46351 5.04210 5.09376 5.21202 5.34846 5.49480 5.60128 5.77652 5.92706 6.04926 6.20644 6.41264 6.47346 6.60734 6.63432 6.75127 6.89464 6.98647 7.18774 7.30277 7.66539 7.81372 7.83595 7.99010 8.41048 9.03639 9.60609 11.10278 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.030771 B = 0.007025 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.717997 B = 3984.847990 C = 4331.596732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.105 4.105 11 C -0.103 4.103 12 C -0.164 4.164 13 C -0.058 4.058 14 C -0.089 4.089 15 C -0.131 4.131 16 C -0.113 4.113 17 C -0.150 4.150 18 C 0.104 3.896 19 O -0.499 6.499 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.015 0.985 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.110 0.890 26 H 0.115 0.885 27 H 0.132 0.868 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.729 -10.717 -5.349 13.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.142 4.142 11 C -0.121 4.121 12 C -0.182 4.182 13 C -0.059 4.059 14 C -0.107 4.107 15 C -0.149 4.149 16 C -0.132 4.132 17 C -0.168 4.168 18 C 0.060 3.940 19 O -0.309 6.309 20 H 0.069 0.931 21 H 0.034 0.966 22 H 0.033 0.967 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.128 0.872 26 H 0.133 0.867 27 H 0.149 0.851 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 6.826 -11.143 -5.214 14.069 hybrid contribution 0.026 1.448 -0.164 1.458 sum 6.852 -9.694 -5.377 13.032 Atomic orbital electron populations 1.69978 1.06055 1.26477 1.50998 1.25025 0.94847 0.99253 0.95362 0.86555 0.80152 0.83832 0.77594 1.19701 1.21021 1.20980 1.21289 0.93066 0.90984 1.50367 0.92611 1.19052 0.93856 0.90853 0.97237 1.21277 0.99299 0.92375 1.01263 1.23746 0.98020 0.94789 0.95547 1.21346 0.98342 1.00791 0.97711 1.19386 0.94908 0.98541 0.93066 1.21375 0.91676 0.97133 1.00557 1.21083 0.98983 1.01147 0.93648 1.20975 0.97054 0.99434 0.95695 1.21270 0.93875 1.02013 0.99650 1.18540 0.86660 0.97864 0.90945 1.84703 1.26243 1.36372 1.83589 0.93060 0.96581 0.96656 0.91268 0.92133 0.87167 0.86742 0.85056 0.85916 0.86090 0.85884 0.75414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.03 0.70 4.96 -27.88 -0.14 0.56 16 10 C -0.11 -2.18 3.99 -27.88 -0.11 -2.29 16 11 C -0.10 -1.83 9.47 -36.21 -0.34 -2.17 16 12 C -0.16 -2.71 9.32 -37.60 -0.35 -3.06 16 13 C -0.06 -0.96 5.09 -104.89 -0.53 -1.50 16 14 C -0.09 -1.40 7.32 -39.22 -0.29 -1.68 16 15 C -0.13 -1.80 10.03 -39.62 -0.40 -2.19 16 16 C -0.11 -1.47 10.03 -39.53 -0.40 -1.86 16 17 C -0.15 -2.05 9.98 -39.48 -0.39 -2.44 16 18 C 0.10 1.61 6.71 -38.81 -0.26 1.35 16 19 O -0.50 -7.05 12.96 -19.21 -0.25 -7.29 16 20 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 21 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 22 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.07 1.44 4.86 -51.93 -0.25 1.18 16 24 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 25 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 26 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 27 H 0.13 1.99 6.64 -52.48 -0.35 1.64 16 28 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.39 4.12 9.06 45.56 0.41 4.53 16 LS Contribution 269.82 15.07 4.07 4.07 Total: -1.00 -31.61 269.82 -7.20 -38.81 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -3.11 Total: 2.87 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: -3.62 Total: -28.82 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.74 Total: -26.31 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.25 Total: -7.29 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.61 -7.20 -38.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394928629.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.414 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds