Wall clock time and date at job start Mon Mar 30 2020 02:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99708 * 2 1 4 4 H 1.48502 * 109.47487 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47229 * 300.00405 * 3 2 1 6 6 H 1.48509 * 109.47259 * 59.99973 * 3 2 1 7 7 C 1.37869 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00009 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00359 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47288 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46884 * 179.97438 * 10 9 7 12 12 C 1.32614 * 119.99826 * 126.88524 * 11 10 9 13 13 C 1.47732 * 120.00050 * 6.88607 * 12 11 10 14 14 C 1.39501 * 120.17329 * 41.24980 * 13 12 11 15 15 C 1.37950 * 119.91366 * 179.69853 * 14 13 12 16 16 C 1.38417 * 120.25847 * 0.58115 * 15 14 13 17 17 C 1.38198 * 120.34613 * 359.71987 * 16 15 14 18 18 C 1.38551 * 120.08369 * 359.97438 * 17 16 15 19 19 O 1.35830 * 120.13303 * 180.02562 * 18 17 16 20 20 H 0.97001 * 120.00128 * 359.97438 * 1 2 3 21 21 H 1.09008 * 109.46378 * 300.00146 * 9 7 2 22 22 H 1.08997 * 109.47141 * 59.99146 * 9 7 2 23 23 H 1.08998 * 109.47198 * 299.99811 * 10 9 7 24 24 H 1.09000 * 109.47308 * 60.00050 * 10 9 7 25 25 H 1.08007 * 120.00123 * 306.89202 * 11 10 9 26 26 H 1.08000 * 119.99645 * 186.87823 * 12 11 10 27 27 H 1.08007 * 120.04409 * 0.02562 * 14 13 12 28 28 H 1.07997 * 119.87738 * 180.31937 * 15 14 13 29 29 H 1.08002 * 119.83055 * 179.73756 * 16 15 14 30 30 H 1.08001 * 119.95877 * 180.02562 * 17 16 15 31 31 H 0.96698 * 114.00207 * 269.98270 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 6 2.2455 -3.6620 -0.0027 11 6 1.4921 -4.9671 -0.0033 12 6 1.7573 -5.8854 -0.9225 13 6 2.8912 -5.6959 -1.8503 14 6 4.1027 -5.1870 -1.3822 15 6 5.1600 -5.0181 -2.2520 16 6 5.0201 -5.3404 -3.5908 17 6 3.8227 -5.8394 -4.0674 18 6 2.7535 -6.0207 -3.2051 19 8 1.5763 -6.5116 -3.6724 20 1 -0.4850 0.8400 0.0004 21 1 0.6242 -2.5574 0.8881 22 1 0.6248 -2.5563 -0.8919 23 1 2.8721 -3.6034 -0.8927 24 1 2.8722 -3.6050 0.8873 25 1 0.7360 -5.1545 0.7449 26 1 1.1443 -6.7719 -0.9928 27 1 4.2145 -4.9306 -0.3389 28 1 6.0993 -4.6289 -1.8879 29 1 5.8510 -5.2014 -4.2666 30 1 3.7206 -6.0892 -5.1132 31 1 0.9596 -5.8318 -3.9765 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394928629.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:51 Heat of formation + Delta-G solvation = -35.848573 kcal Electronic energy + Delta-G solvation = -13883.183493 eV Core-core repulsion = 11514.731601 eV Total energy + Delta-G solvation = -2368.451892 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.76654 -37.74916 -36.79390 -34.96927 -32.32889 -30.94232 -29.78813 -27.02504 -24.18394 -23.32183 -22.50255 -20.22305 -18.93227 -18.40275 -17.03275 -16.68410 -16.48027 -16.13276 -15.79031 -14.92355 -14.58864 -14.52606 -13.80012 -13.43528 -13.30740 -13.10290 -12.89395 -12.58022 -12.47367 -12.12801 -11.91971 -11.47700 -11.29582 -11.09682 -10.61509 -10.43823 -9.60517 -9.05088 -8.20720 -6.32000 0.11317 0.40806 1.39319 1.39523 1.48667 1.53573 2.40598 2.78978 3.12418 3.39816 3.85525 4.03505 4.17824 4.25989 4.45481 4.54422 4.62199 4.77143 4.91821 4.97895 5.12322 5.16535 5.38797 5.46085 5.50021 5.57144 5.66595 5.73907 5.84240 5.92519 6.01838 6.24474 6.82972 6.84931 7.37352 8.91395 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.030771 B = 0.007025 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.717997 B = 3984.847990 C = 4331.596732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.031 3.969 10 C -0.087 4.087 11 C -0.129 4.129 12 C -0.138 4.138 13 C -0.094 4.094 14 C -0.105 4.105 15 C -0.137 4.137 16 C -0.107 4.107 17 C -0.155 4.155 18 C 0.094 3.906 19 O -0.506 6.506 20 H 0.263 0.737 21 H -0.008 1.008 22 H -0.014 1.014 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.118 0.882 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.146 0.854 29 H 0.155 0.845 30 H 0.146 0.854 31 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.547 -10.661 -6.421 15.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.578 4.578 8 H 0.079 0.921 9 C -0.006 4.006 10 C -0.124 4.124 11 C -0.147 4.147 12 C -0.156 4.156 13 C -0.094 4.094 14 C -0.123 4.123 15 C -0.155 4.155 16 C -0.124 4.124 17 C -0.173 4.173 18 C 0.049 3.951 19 O -0.318 6.318 20 H 0.072 0.928 21 H 0.010 0.990 22 H 0.005 0.995 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.136 0.864 26 H 0.146 0.854 27 H 0.146 0.854 28 H 0.164 0.836 29 H 0.172 0.828 30 H 0.164 0.836 31 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 8.646 -11.096 -6.286 15.408 hybrid contribution -0.522 1.354 0.085 1.454 sum 8.124 -9.742 -6.201 14.120 Atomic orbital electron populations 1.70111 1.07841 1.27699 1.51830 1.25993 0.95770 1.03393 0.94751 0.85410 0.79191 0.78732 0.77809 1.18394 1.20420 1.20277 1.21721 0.93570 0.92228 1.50293 0.92072 1.18940 0.94275 0.92788 0.94588 1.20985 0.98057 0.91836 1.01486 1.23541 0.99315 0.94274 0.97527 1.21520 0.97636 1.00292 0.96159 1.19576 0.95319 1.00663 0.93870 1.21503 0.92268 0.97569 1.00946 1.21425 0.99357 1.00723 0.93974 1.21412 0.97667 0.97556 0.95805 1.21597 0.93583 1.01506 1.00607 1.18755 0.87563 0.97852 0.90918 1.84658 1.26381 1.37229 1.83558 0.92781 0.99004 0.99535 0.91188 0.91827 0.86406 0.85422 0.85440 0.83613 0.82752 0.83638 0.73830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.43 13.29 21.44 0.28 -57.15 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -31.07 9.11 25.60 0.23 -30.84 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.68 4.96 29.85 0.15 1.82 16 10 C -0.09 -3.66 3.99 29.85 0.12 -3.54 16 11 C -0.13 -4.63 9.47 24.52 0.23 -4.40 16 12 C -0.14 -4.51 9.32 23.62 0.22 -4.29 16 13 C -0.09 -3.01 5.09 -20.04 -0.10 -3.12 16 14 C -0.10 -3.17 7.32 22.51 0.16 -3.01 16 15 C -0.14 -3.45 10.03 22.24 0.22 -3.23 16 16 C -0.11 -2.41 10.03 22.30 0.22 -2.19 16 17 C -0.15 -3.83 9.98 22.34 0.22 -3.61 16 18 C 0.09 2.75 6.71 22.77 0.15 2.90 16 19 O -0.51 -13.62 12.96 -91.65 -1.19 -14.81 16 20 H 0.26 15.13 8.31 -92.71 -0.77 14.35 16 21 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 22 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 23 H 0.07 2.93 4.86 -2.39 -0.01 2.91 16 24 H 0.06 2.57 8.08 -2.39 -0.02 2.55 16 25 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 26 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 27 H 0.13 3.83 6.64 -2.91 -0.02 3.81 16 28 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 29 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 31 H 0.40 8.11 9.06 -74.06 -0.67 7.44 16 Total: -1.00 -67.74 269.82 3.87 -63.87 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.45 Total: 14.80 kcal Atomic # 6 Polarization: -55.42 SS G_CDS: 2.30 Total: -53.12 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.28 Total: -57.15 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -1.19 Total: -14.81 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -67.74 3.87 -63.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394928629.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.021 kcal (2) G-P(sol) polarization free energy of solvation -67.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds