Wall clock time and date at job start Mon Mar 30 2020 03:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38653 * 119.74739 * 2 1 4 4 C 1.37603 * 120.24480 * 180.27840 * 3 2 1 5 5 C 1.40727 * 119.74299 * 359.47215 * 4 3 2 6 6 C 1.41398 * 120.24550 * 180.27439 * 5 4 3 7 7 H 1.08001 * 120.00422 * 154.16725 * 6 5 4 8 8 C 1.39947 * 119.99556 * 334.16702 * 6 5 4 9 9 N 1.30824 * 120.00229 * 343.54375 * 8 6 5 10 10 Si 1.86803 * 120.00036 * 163.54093 * 8 6 5 11 11 H 1.48506 * 109.46883 * 60.00163 * 10 8 6 12 12 H 1.48491 * 109.47412 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47036 * 300.00411 * 10 8 6 14 14 C 1.40697 * 119.51443 * 0.25598 * 5 4 3 15 15 C 1.50700 * 120.12823 * 180.02562 * 14 5 4 16 16 C 1.52996 * 109.47409 * 84.99366 * 15 14 5 17 17 C 1.50707 * 109.47353 * 179.97438 * 16 15 14 18 18 O 1.20758 * 119.99563 * 125.00102 * 17 16 15 19 19 C 1.37636 * 119.74321 * 359.97438 * 14 5 4 20 20 H 1.09001 * 109.46808 * 270.27294 * 1 2 3 21 21 H 1.08996 * 109.46825 * 30.27389 * 1 2 3 22 22 H 1.09002 * 109.46999 * 150.27416 * 1 2 3 23 23 H 1.08003 * 119.87958 * 0.02562 * 3 2 1 24 24 H 1.07995 * 120.12736 * 179.74707 * 4 3 2 25 25 H 0.97003 * 119.99799 * 180.02562 * 9 8 6 26 26 H 1.09004 * 109.46986 * 204.99347 * 15 14 5 27 27 H 1.08999 * 109.47149 * 324.99118 * 15 14 5 28 28 H 1.08998 * 109.47667 * 300.00134 * 16 15 14 29 29 H 1.09002 * 109.47155 * 60.00294 * 16 15 14 30 30 H 1.08001 * 119.99948 * 305.00481 * 17 16 15 31 31 H 1.08001 * 119.87452 * 180.02562 * 19 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1951 1.2038 0.0000 4 6 3.5710 1.2158 -0.0058 5 6 4.2798 0.0000 -0.0004 6 6 5.6938 -0.0001 -0.0004 7 1 6.2338 -0.8401 0.4108 8 6 6.3935 1.0885 -0.5334 9 7 5.7796 1.9441 -1.3096 10 14 8.2041 1.3198 -0.1363 11 1 8.9690 0.1368 -0.6063 12 1 8.7089 2.5381 -0.8190 13 1 8.3740 1.4679 1.3314 14 6 3.5712 -1.2154 0.0053 15 6 4.3162 -2.5254 0.0116 16 6 4.6776 -2.8997 1.4504 17 6 5.4221 -4.2100 1.4568 18 8 6.5079 -4.2849 1.9800 19 6 2.1948 -1.2034 0.0062 20 1 -0.3633 0.0049 1.0277 21 1 -0.3633 0.8875 -0.5181 22 1 -0.3633 -0.8925 -0.5096 23 1 1.6490 2.1356 0.0004 24 1 4.1049 2.1545 -0.0099 25 1 6.2647 2.6984 -1.6792 26 1 3.6861 -3.3038 -0.4190 27 1 5.2275 -2.4279 -0.5783 28 1 5.3076 -2.1214 1.8811 29 1 3.7662 -2.9972 2.0403 30 1 4.9846 -5.0819 0.9934 31 1 1.6487 -2.1352 0.0110 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396066926.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:18 Heat of formation + Delta-G solvation = -56.842509 kcal Electronic energy + Delta-G solvation = -14136.286181 eV Core-core repulsion = 11766.923924 eV Total energy + Delta-G solvation = -2369.362258 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.18167 -39.53347 -35.77820 -35.04754 -32.39484 -30.57929 -29.12002 -26.04497 -25.15928 -22.44442 -22.00944 -20.76369 -19.03691 -17.31732 -17.07754 -16.20273 -15.89475 -15.79523 -15.30897 -14.90339 -14.30460 -14.19905 -13.94751 -13.44500 -13.30096 -13.04117 -12.98063 -12.67719 -12.53712 -12.20033 -11.85083 -11.78452 -11.23335 -11.21000 -10.96339 -10.44587 -9.13038 -9.04072 -8.58858 -6.25266 0.97783 1.08748 1.24890 1.34463 1.43654 1.51262 2.18749 2.76040 3.55523 3.74436 4.18280 4.39086 4.47210 4.52227 4.63515 4.74111 4.84453 4.91539 5.01342 5.05130 5.19638 5.20842 5.33599 5.45269 5.49725 5.60947 5.83083 6.07950 6.22593 6.32122 6.46983 6.54946 6.78203 7.01418 7.13435 8.36532 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.016185 B = 0.013634 C = 0.007677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.560354 B = 2053.261196 C = 3646.449376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.211 4.211 3 C -0.119 4.119 4 C -0.190 4.190 5 C 0.079 3.921 6 C -0.488 4.488 7 H 0.075 0.925 8 C 0.036 3.964 9 N -0.829 5.829 10 Si 0.965 3.035 11 H -0.263 1.263 12 H -0.268 1.268 13 H -0.266 1.266 14 C -0.198 4.198 15 C -0.039 4.039 16 C -0.180 4.180 17 C 0.362 3.638 18 O -0.520 6.520 19 C -0.091 4.091 20 H 0.060 0.940 21 H 0.052 0.948 22 H 0.066 0.934 23 H 0.099 0.901 24 H 0.092 0.908 25 H 0.284 0.716 26 H 0.092 0.908 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.111 0.889 30 H 0.147 0.853 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.953 -6.752 1.635 8.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.212 4.212 3 C -0.137 4.137 4 C -0.210 4.210 5 C 0.077 3.923 6 C -0.518 4.518 7 H 0.093 0.907 8 C -0.178 4.178 9 N -0.456 5.456 10 Si 0.787 3.213 11 H -0.187 1.187 12 H -0.192 1.192 13 H -0.190 1.190 14 C -0.199 4.199 15 C -0.076 4.076 16 C -0.218 4.218 17 C 0.223 3.777 18 O -0.395 6.395 19 C -0.109 4.109 20 H 0.078 0.922 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.117 0.883 24 H 0.110 0.890 25 H 0.095 0.905 26 H 0.111 0.889 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.129 0.871 30 H 0.163 0.837 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.333 -6.577 1.760 8.070 hybrid contribution 0.932 0.936 -0.014 1.321 sum -3.402 -5.641 1.745 6.815 Atomic orbital electron populations 1.20464 0.90498 1.01777 1.01235 1.19758 0.96321 0.92786 1.12354 1.20827 0.93989 0.97097 1.01783 1.21288 0.93556 0.98178 1.07972 1.17796 0.93546 0.91562 0.89404 1.19715 0.92105 1.03723 1.36282 0.90709 1.26598 1.04470 0.94419 0.92282 1.69880 1.40125 1.12343 1.23252 0.85506 0.77630 0.78713 0.79450 1.18741 1.19196 1.19019 1.20005 0.93631 0.94277 1.11979 1.19951 0.99210 0.94283 0.94202 1.22460 1.02535 0.97304 0.99510 1.26666 0.84266 0.94106 0.72711 1.90370 1.23437 1.88033 1.37631 1.20689 0.93039 0.96989 1.00219 0.92163 0.92874 0.91491 0.88327 0.88967 0.90544 0.88932 0.93444 0.93052 0.87070 0.83734 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.53 10.00 71.24 0.71 -1.82 16 2 C -0.21 -8.59 5.90 -19.67 -0.12 -8.71 16 3 C -0.12 -5.50 9.67 22.22 0.21 -5.29 16 4 C -0.19 -10.11 8.69 22.73 0.20 -9.91 16 5 C 0.08 4.14 5.56 -21.29 -0.12 4.03 16 6 C -0.49 -26.10 8.11 23.46 0.19 -25.91 16 7 H 0.07 3.91 6.09 -2.91 -0.02 3.89 16 8 C 0.04 1.88 5.16 85.26 0.44 2.32 16 9 N -0.83 -44.48 10.97 21.83 0.24 -44.24 16 10 Si 0.97 40.21 29.59 68.60 2.03 42.24 16 11 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 12 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 13 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 14 C -0.20 -8.70 5.19 -19.41 -0.10 -8.80 16 15 C -0.04 -1.38 4.67 29.85 0.14 -1.24 16 16 C -0.18 -5.67 5.67 29.85 0.17 -5.50 16 17 C 0.36 9.70 11.19 71.24 0.80 10.50 16 18 O -0.52 -18.89 17.90 -1.44 -0.03 -18.91 16 19 C -0.09 -3.62 9.30 22.22 0.21 -3.41 16 20 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 21 H 0.05 1.54 8.08 -2.39 -0.02 1.52 16 22 H 0.07 1.77 8.08 -2.39 -0.02 1.75 16 23 H 0.10 4.16 8.06 -2.91 -0.02 4.14 16 24 H 0.09 5.23 6.21 -2.91 -0.02 5.21 16 25 H 0.28 13.97 8.30 -92.71 -0.77 13.20 16 26 H 0.09 2.50 8.05 -2.38 -0.02 2.48 16 27 H 0.05 1.88 7.06 -2.39 -0.02 1.86 16 28 H 0.05 2.02 7.28 -2.39 -0.02 2.00 16 29 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -64.03 268.49 6.09 -57.94 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 1.11 Total: 16.73 kcal Atomic # 6 Polarization: -56.49 SS G_CDS: 2.73 Total: -53.76 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.24 Total: -44.24 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.03 Total: -18.91 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -64.03 6.09 -57.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396066926.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.102 kcal (2) G-P(sol) polarization free energy of solvation -64.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds