Wall clock time and date at job start Mon Mar 30 2020 03:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40732 * 120.12621 * 2 1 4 4 C 1.41393 * 120.24452 * 359.97438 * 3 2 1 5 5 H 1.07999 * 120.00444 * 333.84716 * 4 3 2 6 6 C 1.39943 * 120.00084 * 153.85230 * 4 3 2 7 7 N 1.30824 * 119.99912 * 343.85416 * 6 4 3 8 8 Si 1.86803 * 120.00252 * 163.85462 * 6 4 3 9 9 H 1.48496 * 109.46950 * 59.99956 * 8 6 4 10 10 H 1.48499 * 109.47166 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46979 * 300.00014 * 8 6 4 12 12 C 1.40702 * 119.51041 * 179.97438 * 3 2 1 13 13 C 1.37638 * 119.74268 * 359.97438 * 12 3 2 14 14 C 1.38607 * 120.24801 * 0.02562 * 13 12 3 15 15 C 1.37592 * 120.12339 * 179.97438 * 2 1 3 16 16 C 1.50697 * 119.88081 * 0.02562 * 15 2 1 17 17 C 1.53005 * 109.47083 * 84.99757 * 16 15 2 18 18 C 1.50695 * 109.47209 * 180.02562 * 17 16 15 19 19 O 1.20765 * 120.00334 * 125.00163 * 18 17 16 20 20 H 1.09007 * 109.47233 * 89.99973 * 1 2 3 21 21 H 1.08999 * 109.47111 * 210.00162 * 1 2 3 22 22 H 1.09005 * 109.47282 * 330.00399 * 1 2 3 23 23 H 0.97006 * 120.00148 * 180.02562 * 7 6 4 24 24 H 1.07998 * 120.12332 * 180.02562 * 12 3 2 25 25 H 1.08003 * 119.87248 * 179.97438 * 13 12 3 26 26 H 1.08006 * 119.74959 * 179.71862 * 14 13 12 27 27 H 1.08997 * 109.47349 * 204.99176 * 16 15 2 28 28 H 1.08999 * 109.47360 * 324.99589 * 16 15 2 29 29 H 1.08998 * 109.47045 * 300.00090 * 17 16 15 30 30 H 1.08999 * 109.47160 * 59.99710 * 17 16 15 31 31 H 1.08001 * 120.00104 * 304.99371 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2134 1.2172 0.0000 4 6 1.5143 2.4463 -0.0005 5 1 0.5178 2.5006 -0.4132 6 6 2.1138 3.5925 0.5335 7 7 3.1637 3.4819 1.3062 8 14 1.4150 5.2803 0.1431 9 1 0.0100 5.3561 0.6177 10 1 2.2252 6.3213 0.8251 11 1 1.4548 5.5052 -1.3242 12 6 3.6203 1.2021 0.0005 13 6 4.2902 -0.0002 0.0016 14 6 3.5842 -1.1930 0.0016 15 6 2.1975 -1.1901 0.0005 16 6 1.4442 -2.4952 0.0005 17 6 1.0808 -2.8744 -1.4366 18 6 0.3269 -4.1791 -1.4366 19 8 -0.7592 -4.2491 -1.9600 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 3.5791 4.2764 1.6767 24 1 4.1723 2.1303 0.0010 25 1 5.3702 -0.0143 0.0016 26 1 4.1180 -2.1318 -0.0022 27 1 2.0690 -3.2755 0.4351 28 1 0.5333 -2.3890 0.5896 29 1 0.4560 -2.0941 -1.8712 30 1 1.9917 -2.9806 -2.0257 31 1 0.7579 -5.0519 -0.9685 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396068767.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:02 Heat of formation + Delta-G solvation = -54.137210 kcal Electronic energy + Delta-G solvation = -14078.109966 eV Core-core repulsion = 11708.865019 eV Total energy + Delta-G solvation = -2369.244947 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.25416 -39.59587 -36.04343 -34.47062 -33.00389 -30.71632 -28.14279 -26.60315 -25.50134 -22.25116 -21.93322 -20.94487 -18.74359 -17.33288 -17.10075 -16.33545 -16.09899 -15.85935 -15.37694 -14.98418 -14.30252 -14.10010 -13.97248 -13.34286 -13.23147 -13.08072 -12.85285 -12.79617 -12.63527 -12.21216 -11.95748 -11.69665 -11.29624 -11.08443 -10.99941 -10.47995 -9.16339 -8.97513 -8.57869 -6.28869 1.01125 1.04619 1.22370 1.36774 1.47298 1.54589 2.20967 2.76993 3.52483 3.73297 4.09828 4.26546 4.42017 4.52778 4.64270 4.71395 4.81371 4.89323 4.96609 5.04309 5.10968 5.18715 5.30164 5.40961 5.44231 5.63396 5.85260 6.10317 6.23384 6.25974 6.47648 6.53332 6.77258 7.01095 7.12935 8.37951 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.039649 B = 0.007477 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.026757 B = 3743.776199 C = 4296.897460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.206 4.206 3 C 0.077 3.923 4 C -0.496 4.496 5 H 0.075 0.925 6 C 0.034 3.966 7 N -0.832 5.832 8 Si 0.976 3.024 9 H -0.260 1.260 10 H -0.269 1.269 11 H -0.263 1.263 12 C -0.195 4.195 13 C -0.120 4.120 14 C -0.225 4.225 15 C -0.067 4.067 16 C -0.059 4.059 17 C -0.181 4.181 18 C 0.364 3.636 19 O -0.517 6.517 20 H 0.046 0.954 21 H 0.065 0.935 22 H 0.043 0.957 23 H 0.285 0.715 24 H 0.093 0.907 25 H 0.105 0.895 26 H 0.125 0.875 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.795 -8.414 -1.585 8.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.207 4.207 3 C 0.075 3.925 4 C -0.526 4.526 5 H 0.093 0.907 6 C -0.180 4.180 7 N -0.458 5.458 8 Si 0.797 3.203 9 H -0.184 1.184 10 H -0.193 1.193 11 H -0.187 1.187 12 C -0.214 4.214 13 C -0.138 4.138 14 C -0.244 4.244 15 C -0.067 4.067 16 C -0.097 4.097 17 C -0.219 4.219 18 C 0.224 3.776 19 O -0.391 6.391 20 H 0.065 0.935 21 H 0.083 0.917 22 H 0.062 0.938 23 H 0.095 0.905 24 H 0.111 0.889 25 H 0.123 0.877 26 H 0.143 0.857 27 H 0.118 0.882 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.221 -8.312 -1.713 8.574 hybrid contribution 0.183 1.412 0.001 1.423 sum -1.038 -6.901 -1.711 7.185 Atomic orbital electron populations 1.20416 0.92260 1.00939 1.00062 1.20007 0.95552 0.92762 1.12378 1.17858 0.92374 0.92993 0.89323 1.19746 1.02373 0.93802 1.36682 0.90704 1.26697 0.94493 1.04730 0.92066 1.69885 1.19774 1.32880 1.23302 0.85353 0.79251 0.76219 0.79493 1.18435 1.19344 1.18740 1.21276 0.94925 0.96757 1.08474 1.20961 0.98512 0.93341 1.00975 1.20671 0.93403 0.96878 1.13471 1.19511 0.93574 0.94000 0.99592 1.20325 0.99885 0.94330 0.95119 1.22436 1.02772 0.97821 0.98852 1.26600 0.84166 0.93906 0.72924 1.90392 1.23407 1.87823 1.37496 0.93510 0.91656 0.93778 0.90480 0.88900 0.87664 0.85722 0.88212 0.91276 0.92250 0.87246 0.83836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.29 8.75 71.24 0.62 -2.67 16 2 C -0.21 -9.62 5.94 -19.41 -0.12 -9.73 16 3 C 0.08 4.13 5.56 -21.29 -0.12 4.02 16 4 C -0.50 -26.98 8.12 23.46 0.19 -26.79 16 5 H 0.07 3.94 6.89 -2.91 -0.02 3.92 16 6 C 0.03 1.75 5.16 85.26 0.44 2.19 16 7 N -0.83 -44.63 10.97 21.83 0.24 -44.39 16 8 Si 0.98 39.26 29.59 68.60 2.03 41.28 16 9 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 10 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 11 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 12 C -0.19 -10.38 8.68 22.73 0.20 -10.19 16 13 C -0.12 -5.47 10.02 22.22 0.22 -5.25 16 14 C -0.23 -9.00 9.68 22.46 0.22 -8.79 16 15 C -0.07 -2.64 5.13 -19.92 -0.10 -2.74 16 16 C -0.06 -1.65 4.82 29.85 0.14 -1.50 16 17 C -0.18 -4.51 5.77 29.85 0.17 -4.34 16 18 C 0.36 7.59 11.19 71.23 0.80 8.39 16 19 O -0.52 -15.69 17.90 -1.47 -0.03 -15.71 16 20 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 21 H 0.06 2.30 6.01 -2.39 -0.01 2.28 16 22 H 0.04 1.91 6.79 -2.38 -0.02 1.90 16 23 H 0.28 13.92 8.30 -92.70 -0.77 13.15 16 24 H 0.09 5.26 6.22 -2.91 -0.02 5.24 16 25 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 26 H 0.12 4.01 8.06 -2.91 -0.02 3.98 16 27 H 0.10 2.11 8.05 -2.39 -0.02 2.09 16 28 H 0.07 1.92 6.15 -2.39 -0.01 1.91 16 29 H 0.06 1.83 7.88 -2.39 -0.02 1.81 16 30 H 0.11 2.46 8.14 -2.39 -0.02 2.45 16 31 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -64.61 265.35 6.03 -58.58 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 1.12 Total: 17.64 kcal Atomic # 6 Polarization: -60.07 SS G_CDS: 2.67 Total: -57.40 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.24 Total: -44.39 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.03 Total: -15.71 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.28 kcal Total: -64.61 6.03 -58.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396068767.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.440 kcal (2) G-P(sol) polarization free energy of solvation -64.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds