Wall clock time and date at job start Mon Mar 30 2020 03:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50706 * 109.46729 * 2 1 4 4 C 1.38426 * 119.82376 * 90.00352 * 3 2 1 5 5 C 1.37864 * 120.16945 * 179.97438 * 4 3 2 6 6 C 1.39872 * 119.82519 * 359.97438 * 5 4 3 7 7 C 1.47171 * 120.16962 * 179.97438 * 6 5 4 8 8 O 1.21254 * 119.99838 * 180.02562 * 7 6 5 9 9 C 1.39835 * 119.65783 * 0.02562 * 6 5 4 10 10 C 1.50703 * 120.08741 * 179.97438 * 9 6 5 11 11 C 1.50701 * 109.47064 * 279.99671 * 10 9 6 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.37909 * 119.82342 * 0.26798 * 9 6 5 20 20 H 1.09005 * 109.46844 * 60.00125 * 1 2 3 21 21 H 1.09002 * 109.47168 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47262 * 300.00129 * 1 2 3 23 23 H 1.08992 * 109.46703 * 240.00292 * 2 1 3 24 24 H 1.08996 * 109.46822 * 119.99745 * 2 1 3 25 25 H 1.07995 * 119.91508 * 359.97374 * 4 3 2 26 26 H 1.08000 * 120.08698 * 179.97438 * 5 4 3 27 27 H 1.07993 * 120.00380 * 0.02562 * 7 6 5 28 28 H 1.09002 * 109.47152 * 159.99763 * 10 9 6 29 29 H 1.09001 * 109.46980 * 39.99864 * 10 9 6 30 30 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 31 31 H 1.07998 * 119.91363 * 179.72158 * 19 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2618 2.0700 1.2009 5 6 2.7218 3.3696 1.2092 6 6 2.9570 4.0320 0.0000 7 6 3.4475 5.4196 0.0000 8 8 3.6499 5.9911 -1.0501 9 6 2.7227 3.3695 -1.2089 10 6 2.9723 4.0742 -2.5174 11 6 1.8079 4.9778 -2.8314 12 1 0.9710 5.0363 -2.1513 13 6 1.8114 5.7307 -3.9865 14 7 2.8308 5.6598 -4.8145 15 14 0.3684 6.8512 -4.3754 16 1 0.2163 7.8562 -3.2927 17 1 0.6143 7.5456 -5.6649 18 1 -0.8728 6.0425 -4.4781 19 6 2.2568 2.0715 -1.2005 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.0801 1.5570 2.1337 26 1 2.9000 3.8749 2.1470 27 1 3.6271 5.9289 0.9353 28 1 3.0842 3.3363 -3.3119 29 1 3.8832 4.6681 -2.4422 30 1 2.8331 6.1892 -5.6273 31 1 2.0711 1.5599 -2.1334 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396088636.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:58 Heat of formation + Delta-G solvation = -22.852208 kcal Electronic energy + Delta-G solvation = -14213.710742 eV Core-core repulsion = 11845.822415 eV Total energy + Delta-G solvation = -2367.888328 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.37636 -37.48932 -34.06245 -32.99298 -31.13405 -29.43755 -27.18585 -24.62155 -23.19817 -21.75199 -21.18847 -19.22187 -16.33362 -16.17600 -15.40960 -14.88390 -14.32310 -14.15986 -13.57412 -13.34285 -13.17916 -12.91801 -12.48152 -12.08051 -12.02330 -11.36625 -11.22313 -10.99723 -10.89831 -10.70205 -10.55413 -10.42695 -9.53752 -9.37537 -8.57572 -8.23926 -8.12928 -7.86946 -5.89504 -3.88868 1.37189 2.04747 3.23687 3.39294 3.42560 3.45747 4.40840 4.59609 4.92647 5.05232 5.11080 5.39008 5.47687 5.48700 5.51484 5.72935 5.86344 5.91123 6.01568 6.12839 6.29994 6.31602 6.50650 6.63852 6.88472 7.05320 7.11529 7.52558 7.68720 7.95343 8.02948 8.41042 8.47145 9.11546 9.70565 11.22012 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.028589 B = 0.009148 C = 0.007810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.145632 B = 3060.114855 C = 3584.469223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.060 4.060 4 C -0.162 4.162 5 C -0.075 4.075 6 C -0.198 4.198 7 C 0.351 3.649 8 O -0.401 6.401 9 C 0.023 3.977 10 C 0.039 3.961 11 C -0.487 4.487 12 H 0.049 0.951 13 C 0.061 3.939 14 N -0.893 5.893 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.278 1.278 19 C -0.139 4.139 20 H 0.059 0.941 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.019 0.981 29 H 0.060 0.940 30 H 0.260 0.740 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.415 -8.217 11.825 14.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.060 4.060 4 C -0.180 4.180 5 C -0.094 4.094 6 C -0.199 4.199 7 C 0.206 3.794 8 O -0.271 6.271 9 C 0.022 3.978 10 C 0.003 3.997 11 C -0.525 4.525 12 H 0.067 0.933 13 C -0.139 4.139 14 N -0.532 5.532 15 Si 0.719 3.281 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.204 1.204 19 C -0.157 4.157 20 H 0.078 0.922 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.132 0.868 26 H 0.137 0.863 27 H 0.097 0.903 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.238 -7.822 11.062 13.604 hybrid contribution -0.900 0.556 -0.059 1.060 sum -2.137 -7.266 11.003 13.358 Atomic orbital electron populations 1.21742 0.94868 1.01227 1.02508 1.20552 0.96138 0.93142 1.02376 1.20042 0.96954 0.95570 0.93443 1.20677 1.04978 0.95430 0.96929 1.21200 0.96944 0.94438 0.96777 1.20832 1.07470 0.98106 0.93472 1.23720 0.75880 0.86953 0.92860 1.90709 1.35339 1.65774 1.35241 1.21092 0.87485 0.92204 0.96977 1.18663 0.99439 0.95033 0.86548 1.20710 1.02445 1.24155 1.05235 0.93319 1.24894 0.95927 0.96725 0.96396 1.69938 1.30070 1.41270 1.11961 0.86676 0.82842 0.81071 0.77488 1.20360 1.21282 1.20419 1.21005 1.02294 0.95299 0.97110 0.92196 0.92774 0.92694 0.91132 0.91456 0.86817 0.86277 0.90336 0.96256 0.92198 0.93077 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.89 37.16 0.37 -1.33 16 2 C -0.08 -1.05 6.06 -27.88 -0.17 -1.22 16 3 C -0.06 -0.95 5.14 -104.50 -0.54 -1.49 16 4 C -0.16 -2.39 9.68 -39.65 -0.38 -2.77 16 5 C -0.08 -1.17 9.80 -39.11 -0.38 -1.55 16 6 C -0.20 -3.85 5.87 -105.06 -0.62 -4.46 16 7 C 0.35 6.79 11.40 34.36 0.39 7.18 16 8 O -0.40 -9.94 13.16 5.58 0.07 -9.87 16 9 C 0.02 0.51 5.11 -104.14 -0.53 -0.03 16 10 C 0.04 1.06 4.40 -29.03 -0.13 0.94 16 11 C -0.49 -14.21 7.80 -34.44 -0.27 -14.48 16 12 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 13 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 14 N -0.89 -27.64 13.29 55.43 0.74 -26.90 16 15 Si 0.89 22.65 29.54 -169.99 -5.02 17.63 16 16 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 C -0.14 -2.69 9.30 -39.65 -0.37 -3.06 16 20 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 24 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 25 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 26 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 27 H 0.08 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.02 0.54 8.01 -51.93 -0.42 0.13 16 29 H 0.06 1.76 5.93 -51.93 -0.31 1.45 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.12 2.27 8.04 -52.49 -0.42 1.85 16 LS Contribution 270.00 15.07 4.07 4.07 Total: -1.00 -32.88 270.00 -6.93 -39.81 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: -4.06 Total: -4.20 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -2.72 Total: -20.54 kcal Atomic # 7 Polarization: -27.64 SS G_CDS: 0.74 Total: -26.90 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.07 Total: -9.87 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.88 -6.93 -39.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396088636.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.959 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds