Wall clock time and date at job start Mon Mar 30 2020 03:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50707 * 109.46807 * 2 1 4 4 C 1.37898 * 120.08892 * 263.24271 * 3 2 1 5 5 C 1.38383 * 120.17086 * 180.23640 * 4 3 2 6 6 C 1.38426 * 120.35020 * 359.48791 * 5 4 3 7 7 C 1.50702 * 119.91425 * 180.23282 * 6 5 4 8 8 C 1.50695 * 109.47090 * 270.27745 * 7 6 5 9 9 H 1.07996 * 120.00321 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99833 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00146 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99968 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47116 * 89.99729 * 12 10 8 14 14 H 1.48492 * 109.47377 * 209.99917 * 12 10 8 15 15 H 1.48504 * 109.47186 * 330.00041 * 12 10 8 16 16 C 1.37865 * 120.16652 * 0.51425 * 6 5 4 17 17 C 1.39833 * 120.08431 * 83.22860 * 3 2 1 18 18 C 1.47172 * 120.17328 * 0.03672 * 17 3 2 19 19 O 1.21255 * 119.99909 * 184.92200 * 18 17 3 20 20 H 1.09000 * 109.46707 * 299.99921 * 1 2 3 21 21 H 1.08994 * 109.47084 * 59.99388 * 1 2 3 22 22 H 1.08996 * 109.46711 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46876 * 240.00593 * 2 1 3 24 24 H 1.08999 * 109.47038 * 120.00108 * 2 1 3 25 25 H 1.08001 * 119.91551 * 359.96300 * 4 3 2 26 26 H 1.08004 * 119.82479 * 179.72553 * 5 4 3 27 27 H 1.08996 * 109.47013 * 30.28096 * 7 6 5 28 28 H 1.08996 * 109.46631 * 150.27699 * 7 6 5 29 29 H 0.96996 * 120.00120 * 179.97438 * 11 10 8 30 30 H 1.08010 * 120.08365 * 179.75971 * 16 6 5 31 31 H 1.07992 * 119.99778 * 4.92781 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3951 2.0259 -1.1849 5 6 2.8612 3.3289 -1.1863 6 6 2.9571 4.0387 -0.0017 7 6 3.4610 5.4589 -0.0152 8 6 4.9591 5.4619 0.1474 9 1 5.4931 4.5288 0.2498 10 6 5.6483 6.6560 0.1643 11 7 6.9557 6.6588 0.3067 12 14 4.7248 8.2700 -0.0137 13 1 4.3296 8.7649 1.3295 14 1 5.6012 9.2718 -0.6721 15 1 3.5095 8.0565 -0.8398 16 6 2.5983 3.4477 1.1911 17 6 2.1314 2.1293 1.2015 18 6 1.7468 1.4909 2.4705 19 8 1.7487 2.1346 3.4981 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3632 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8900 25 1 2.3195 1.4800 -2.1137 26 1 3.1479 3.7958 -2.1170 27 1 3.1974 5.9289 -0.9627 28 1 3.0054 6.0138 0.8048 29 1 7.4406 7.4988 0.3182 30 1 2.6774 4.0015 2.1150 31 1 1.4630 0.4491 2.4865 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396096878.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:58 Heat of formation + Delta-G solvation = -30.164233 kcal Electronic energy + Delta-G solvation = -13916.572903 eV Core-core repulsion = 11548.367502 eV Total energy + Delta-G solvation = -2368.205401 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.70954 -37.91770 -34.85205 -32.75684 -30.79719 -30.65200 -27.42623 -24.72913 -23.80978 -21.80708 -21.04726 -19.55144 -16.81633 -16.47909 -15.84820 -15.15829 -14.40378 -14.24872 -14.08505 -13.68686 -13.50165 -13.37034 -12.79878 -12.44376 -12.10935 -11.75277 -11.50538 -11.24165 -11.03581 -10.87408 -10.50967 -10.13135 -10.05710 -9.47401 -9.36644 -8.61795 -8.51807 -7.91479 -6.10678 -4.10536 1.03212 1.86310 2.79526 3.27228 3.34787 3.36709 4.24432 4.38668 4.44637 4.80817 4.92258 5.20705 5.24636 5.30643 5.41888 5.53808 5.72096 5.78156 5.78945 5.93253 6.07231 6.11333 6.27682 6.47886 6.73974 6.83767 6.87680 6.95020 7.40024 7.45185 7.63948 7.65200 8.44884 8.93683 9.49126 11.02198 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.039044 B = 0.007151 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.974859 B = 3914.384936 C = 4225.144908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.060 4.060 4 C -0.135 4.135 5 C -0.083 4.083 6 C -0.048 4.048 7 C 0.014 3.986 8 C -0.516 4.516 9 H 0.074 0.926 10 C 0.070 3.930 11 N -0.898 5.898 12 Si 0.878 3.122 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.265 1.265 16 C -0.056 4.056 17 C -0.196 4.196 18 C 0.381 3.619 19 O -0.466 6.466 20 H 0.054 0.946 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.119 0.881 26 H 0.124 0.876 27 H 0.030 0.970 28 H 0.025 0.975 29 H 0.265 0.735 30 H 0.129 0.871 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.124 -11.565 -2.492 16.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.060 4.060 4 C -0.153 4.153 5 C -0.101 4.101 6 C -0.048 4.048 7 C -0.023 4.023 8 C -0.554 4.554 9 H 0.092 0.908 10 C -0.132 4.132 11 N -0.536 5.536 12 Si 0.705 3.295 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.189 1.189 16 C -0.074 4.074 17 C -0.197 4.197 18 C 0.241 3.759 19 O -0.340 6.340 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.137 0.863 26 H 0.142 0.858 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.147 0.853 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.962 -11.102 -1.925 16.433 hybrid contribution -0.143 0.903 -0.268 0.953 sum -12.105 -10.199 -2.193 15.980 Atomic orbital electron populations 1.21792 0.94792 1.01533 1.02392 1.20579 0.96073 0.92957 1.02962 1.19864 0.98324 0.95297 0.92546 1.20896 1.01766 0.95520 0.97069 1.21344 0.96328 0.93841 0.98580 1.20292 0.94070 0.98453 0.91990 1.18825 0.97531 0.88327 0.97618 1.20916 0.88870 0.94849 1.50763 0.90834 1.24995 0.94747 0.99035 0.94384 1.69895 1.06701 1.27044 1.50010 0.86802 0.80170 0.83635 0.78901 1.20070 1.21181 1.18937 1.21347 0.94302 0.93054 0.98675 1.20580 1.07868 0.96286 0.94995 1.24046 0.72220 0.93059 0.86622 1.90503 1.40215 1.67651 1.35601 0.92703 0.92343 0.92417 0.90740 0.90948 0.86258 0.85786 0.95219 0.95681 0.92530 0.85288 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.88 37.16 0.37 -0.92 16 2 C -0.09 -0.88 5.44 -27.88 -0.15 -1.03 16 3 C -0.06 -0.84 5.17 -104.15 -0.54 -1.38 16 4 C -0.13 -2.00 9.66 -39.65 -0.38 -2.38 16 5 C -0.08 -1.48 9.69 -39.46 -0.38 -1.87 16 6 C -0.05 -1.00 5.06 -104.69 -0.53 -1.53 16 7 C 0.01 0.34 4.16 -29.04 -0.12 0.21 16 8 C -0.52 -14.64 9.65 -34.44 -0.33 -14.98 16 9 H 0.07 2.29 7.98 -52.49 -0.42 1.87 16 10 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 11 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 12 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 16 C -0.06 -1.10 9.24 -39.11 -0.36 -1.46 16 17 C -0.20 -3.23 5.87 -105.06 -0.62 -3.84 16 18 C 0.38 5.60 10.51 34.36 0.36 5.96 16 19 O -0.47 -8.57 17.18 5.58 0.10 -8.47 16 20 H 0.05 0.50 7.75 -51.93 -0.40 0.10 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.07 0.66 8.04 -51.93 -0.42 0.24 16 24 H 0.07 0.63 6.65 -51.93 -0.35 0.29 16 25 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 26 H 0.12 2.10 8.06 -52.48 -0.42 1.67 16 27 H 0.03 0.69 7.14 -51.93 -0.37 0.32 16 28 H 0.02 0.59 7.51 -51.93 -0.39 0.20 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.13 2.67 7.66 -52.48 -0.40 2.27 16 31 H 0.10 0.98 6.47 -52.49 -0.34 0.64 16 LS Contribution 269.08 15.07 4.05 4.05 Total: -1.00 -31.85 269.08 -6.48 -38.33 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -3.94 Total: -2.57 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -2.79 Total: -21.28 kcal Atomic # 7 Polarization: -27.55 SS G_CDS: 0.77 Total: -26.78 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.10 Total: -8.47 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.85 -6.48 -38.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396096878.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.165 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds