Wall clock time and date at job start Mon Mar 30 2020 03:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50707 * 109.46807 * 2 1 4 4 C 1.37898 * 120.08892 * 263.24271 * 3 2 1 5 5 C 1.38383 * 120.17086 * 180.23640 * 4 3 2 6 6 C 1.38426 * 120.35020 * 359.48791 * 5 4 3 7 7 C 1.50702 * 119.91425 * 180.23282 * 6 5 4 8 8 C 1.50695 * 109.47090 * 270.27745 * 7 6 5 9 9 H 1.07996 * 120.00321 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99833 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00146 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99968 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47116 * 89.99729 * 12 10 8 14 14 H 1.48492 * 109.47377 * 209.99917 * 12 10 8 15 15 H 1.48504 * 109.47186 * 330.00041 * 12 10 8 16 16 C 1.37865 * 120.16652 * 0.51425 * 6 5 4 17 17 C 1.39833 * 120.08431 * 83.22860 * 3 2 1 18 18 C 1.47172 * 120.17328 * 0.03672 * 17 3 2 19 19 O 1.21255 * 119.99909 * 184.92200 * 18 17 3 20 20 H 1.09000 * 109.46707 * 299.99921 * 1 2 3 21 21 H 1.08994 * 109.47084 * 59.99388 * 1 2 3 22 22 H 1.08996 * 109.46711 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46876 * 240.00593 * 2 1 3 24 24 H 1.08999 * 109.47038 * 120.00108 * 2 1 3 25 25 H 1.08001 * 119.91551 * 359.96300 * 4 3 2 26 26 H 1.08004 * 119.82479 * 179.72553 * 5 4 3 27 27 H 1.08996 * 109.47013 * 30.28096 * 7 6 5 28 28 H 1.08996 * 109.46631 * 150.27699 * 7 6 5 29 29 H 0.96996 * 120.00120 * 179.97438 * 11 10 8 30 30 H 1.08010 * 120.08365 * 179.75971 * 16 6 5 31 31 H 1.07992 * 119.99778 * 4.92781 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3951 2.0259 -1.1849 5 6 2.8612 3.3289 -1.1863 6 6 2.9571 4.0387 -0.0017 7 6 3.4610 5.4589 -0.0152 8 6 4.9591 5.4619 0.1474 9 1 5.4931 4.5288 0.2498 10 6 5.6483 6.6560 0.1643 11 7 6.9557 6.6588 0.3067 12 14 4.7248 8.2700 -0.0137 13 1 4.3296 8.7649 1.3295 14 1 5.6012 9.2718 -0.6721 15 1 3.5095 8.0565 -0.8398 16 6 2.5983 3.4477 1.1911 17 6 2.1314 2.1293 1.2015 18 6 1.7468 1.4909 2.4705 19 8 1.7487 2.1346 3.4981 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3632 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8900 25 1 2.3195 1.4800 -2.1137 26 1 3.1479 3.7958 -2.1170 27 1 3.1974 5.9289 -0.9627 28 1 3.0054 6.0138 0.8048 29 1 7.4406 7.4988 0.3182 30 1 2.6774 4.0015 2.1150 31 1 1.4630 0.4491 2.4865 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396096878.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:58 Heat of formation + Delta-G solvation = -49.675872 kcal Electronic energy + Delta-G solvation = -13917.418991 eV Core-core repulsion = 11548.367502 eV Total energy + Delta-G solvation = -2369.051489 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.99432 -39.24339 -36.21629 -34.64249 -32.18424 -32.10093 -28.99734 -25.97662 -25.30489 -23.23312 -22.29370 -20.89212 -19.02758 -17.72858 -17.18003 -16.41510 -16.24420 -15.66262 -15.37297 -15.00919 -14.69631 -14.51358 -14.36665 -13.75041 -13.66051 -13.53211 -12.68236 -12.63843 -12.28918 -12.23877 -11.88588 -11.80133 -11.69014 -11.51530 -10.84021 -10.65661 -9.86400 -9.33418 -8.34718 -6.40382 -0.25982 0.51904 1.33303 1.34178 1.46280 1.54314 2.31136 2.90119 2.99369 3.32866 3.81258 3.93579 4.08472 4.29676 4.42203 4.49039 4.57902 4.62598 4.76875 4.91485 4.97475 5.10068 5.17190 5.19078 5.20488 5.44496 5.49427 5.52466 5.59271 5.87238 6.05032 6.21640 6.47235 6.65310 7.23303 8.81904 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.039044 B = 0.007151 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.974859 B = 3914.384936 C = 4225.144908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.039 4.039 4 C -0.128 4.128 5 C -0.092 4.092 6 C -0.086 4.086 7 C 0.020 3.980 8 C -0.523 4.523 9 H 0.027 0.973 10 C 0.008 3.992 11 N -0.947 5.947 12 Si 0.951 3.049 13 H -0.269 1.269 14 H -0.278 1.278 15 H -0.244 1.244 16 C -0.083 4.083 17 C -0.208 4.208 18 C 0.390 3.610 19 O -0.509 6.509 20 H 0.048 0.952 21 H 0.054 0.946 22 H 0.082 0.918 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.160 0.840 26 H 0.128 0.872 27 H 0.037 0.963 28 H 0.021 0.979 29 H 0.269 0.731 30 H 0.102 0.898 31 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.412 -13.533 -3.643 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 C -0.039 4.039 4 C -0.146 4.146 5 C -0.110 4.110 6 C -0.086 4.086 7 C -0.017 4.017 8 C -0.561 4.561 9 H 0.045 0.955 10 C -0.189 4.189 11 N -0.588 5.588 12 Si 0.773 3.227 13 H -0.195 1.195 14 H -0.204 1.204 15 H -0.167 1.167 16 C -0.101 4.101 17 C -0.209 4.209 18 C 0.253 3.747 19 O -0.385 6.385 20 H 0.067 0.933 21 H 0.073 0.927 22 H 0.101 0.899 23 H 0.114 0.886 24 H 0.110 0.890 25 H 0.177 0.823 26 H 0.146 0.854 27 H 0.056 0.944 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.267 -13.092 -3.088 19.608 hybrid contribution 0.582 1.332 0.073 1.456 sum -13.685 -11.759 -3.015 18.293 Atomic orbital electron populations 1.21799 0.93498 1.03101 1.02022 1.20756 0.96946 0.89695 1.05126 1.20414 0.95272 0.97183 0.91027 1.21335 0.99946 0.94196 0.99122 1.21505 0.96626 0.95334 0.97573 1.20106 0.97176 0.97519 0.93784 1.18654 0.94357 0.91147 0.97539 1.21156 0.91462 0.93177 1.50327 0.95487 1.25992 0.95605 1.03376 0.93907 1.70050 1.08700 1.28355 1.51657 0.85652 0.79411 0.78174 0.79429 1.19473 1.20350 1.16687 1.21261 0.96520 0.95048 0.97314 1.20931 1.07473 0.95111 0.97337 1.24746 0.70354 0.94770 0.84873 1.90505 1.42101 1.69035 1.36832 0.93263 0.92699 0.89900 0.88572 0.88962 0.82282 0.85356 0.94429 0.96055 0.92247 0.88030 0.82805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.88 71.98 0.71 -1.11 16 2 C -0.09 -1.29 5.44 29.85 0.16 -1.12 16 3 C -0.04 -0.96 5.17 -19.56 -0.10 -1.06 16 4 C -0.13 -3.44 9.66 22.22 0.21 -3.22 16 5 C -0.09 -3.26 9.69 22.35 0.22 -3.05 16 6 C -0.09 -3.68 5.06 -19.91 -0.10 -3.78 16 7 C 0.02 1.00 4.16 29.10 0.12 1.12 16 8 C -0.52 -31.21 9.65 25.60 0.25 -30.97 16 9 H 0.03 1.79 7.98 -2.91 -0.02 1.77 16 10 C 0.01 0.50 5.47 84.66 0.46 0.97 16 11 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 12 Si 0.95 44.85 27.47 68.60 1.88 46.74 16 13 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 15 H -0.24 -10.56 6.54 99.48 0.65 -9.91 16 16 C -0.08 -3.41 9.24 22.58 0.21 -3.20 16 17 C -0.21 -6.59 5.87 -20.15 -0.12 -6.71 16 18 C 0.39 10.70 10.51 70.17 0.74 11.43 16 19 O -0.51 -18.63 17.18 -2.95 -0.05 -18.68 16 20 H 0.05 0.68 7.75 -2.39 -0.02 0.66 16 21 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 22 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.10 1.09 8.04 -2.39 -0.02 1.07 16 24 H 0.09 1.05 6.65 -2.39 -0.02 1.03 16 25 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 26 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 27 H 0.04 1.76 7.14 -2.39 -0.02 1.74 16 28 H 0.02 1.04 7.51 -2.39 -0.02 1.02 16 29 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 30 H 0.10 4.58 7.66 -2.91 -0.02 4.56 16 31 H 0.16 2.44 6.47 -2.91 -0.02 2.42 16 Total: -1.00 -74.31 269.08 5.95 -68.36 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: 1.06 Total: 4.40 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 2.76 Total: -40.71 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.30 Total: -60.11 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.05 Total: -18.68 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.74 kcal Total: -74.31 5.95 -68.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396096878.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.687 kcal (2) G-P(sol) polarization free energy of solvation -74.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds