Wall clock time and date at job start Mon Mar 30 2020 03:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46827 * 2 1 4 4 C 1.38430 * 119.82128 * 264.99833 * 3 2 1 5 5 C 1.37864 * 120.17128 * 179.69917 * 4 3 2 6 6 C 1.39878 * 119.82558 * 0.27823 * 5 4 3 7 7 C 1.47163 * 120.17212 * 179.97438 * 6 5 4 8 8 O 1.21250 * 119.99970 * 0.02562 * 7 6 5 9 9 C 1.39832 * 119.65618 * 359.97438 * 6 5 4 10 10 C 1.37915 * 119.82271 * 0.02562 * 9 6 5 11 11 C 1.50703 * 119.91184 * 180.02562 * 10 9 6 12 12 C 1.50701 * 109.46842 * 264.99716 * 11 10 9 13 13 H 1.08000 * 120.00516 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99864 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99777 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00096 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47221 * 89.99887 * 16 14 12 18 18 H 1.48502 * 109.46873 * 210.00141 * 16 14 12 19 19 H 1.48501 * 109.46818 * 329.99341 * 16 14 12 20 20 H 1.08994 * 109.47274 * 300.00070 * 1 2 3 21 21 H 1.08999 * 109.47337 * 60.00931 * 1 2 3 22 22 H 1.09010 * 109.46902 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47274 * 239.99930 * 2 1 3 24 24 H 1.08995 * 109.47374 * 119.99554 * 2 1 3 25 25 H 1.08002 * 119.91813 * 359.97438 * 4 3 2 26 26 H 1.08000 * 120.08754 * 180.29862 * 5 4 3 27 27 H 1.07999 * 119.99659 * 179.97438 * 7 6 5 28 28 H 1.07999 * 120.09161 * 180.02562 * 9 6 5 29 29 H 1.09000 * 109.46859 * 24.99937 * 11 10 9 30 30 H 1.09000 * 109.46678 * 144.99994 * 11 10 9 31 31 H 0.96997 * 119.99819 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3604 2.0350 -1.1964 5 6 2.8147 3.3366 -1.2054 6 6 2.9492 4.0348 -0.0008 7 6 3.4340 5.4243 -0.0014 8 8 3.7175 5.9670 -1.0480 9 6 2.6207 3.4057 1.2040 10 6 2.1676 2.1031 1.1963 11 6 1.8123 1.4233 2.4935 12 6 2.9955 0.6299 2.9852 13 1 3.9130 0.6193 2.4156 14 6 2.9066 -0.0826 4.1623 15 7 1.7895 -0.0693 4.8562 16 14 4.3734 -1.0655 4.7722 17 1 5.2156 -0.2082 5.6445 18 1 3.8954 -2.2399 5.5451 19 1 5.1751 -1.5298 3.6117 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8934 -0.5137 0.8900 25 1 2.2561 1.4946 -2.1257 26 1 3.0658 3.8160 -2.1400 27 1 3.5363 5.9609 0.9303 28 1 2.7214 3.9383 2.1381 29 1 1.5448 2.1749 3.2362 30 1 0.9672 0.7538 2.3333 31 1 1.7271 -0.5702 5.6845 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396097257.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:03 Heat of formation + Delta-G solvation = -50.533457 kcal Electronic energy + Delta-G solvation = -14084.131469 eV Core-core repulsion = 11715.042792 eV Total energy + Delta-G solvation = -2369.088677 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.85954 -39.41841 -35.58106 -34.76561 -32.93198 -30.88503 -28.89071 -26.09968 -25.07749 -23.34799 -22.59084 -20.54262 -18.47872 -17.76818 -17.08773 -16.50274 -16.22320 -15.75017 -15.26977 -14.78374 -14.53868 -14.29912 -14.14649 -13.93491 -13.29877 -13.13995 -12.89415 -12.56259 -12.51635 -12.32851 -11.84407 -11.75820 -11.48229 -11.25915 -10.71513 -10.53632 -9.68432 -9.39145 -8.16894 -6.27678 -0.21463 0.60043 1.40882 1.42055 1.51937 1.58142 2.41735 2.98256 3.14901 3.43095 3.91848 4.05511 4.13621 4.28554 4.46518 4.56141 4.62558 4.70997 4.75930 5.02764 5.06597 5.19322 5.23557 5.33902 5.39962 5.50137 5.52064 5.64138 5.80839 6.04841 6.08815 6.25493 6.49295 6.84604 7.40054 8.92123 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.026895 B = 0.008633 C = 0.007274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.836754 B = 3242.479963 C = 3848.294185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 C -0.055 4.055 4 C -0.134 4.134 5 C -0.084 4.084 6 C -0.210 4.210 7 C 0.399 3.601 8 O -0.505 6.505 9 C -0.074 4.074 10 C -0.082 4.082 11 C 0.058 3.942 12 C -0.518 4.518 13 H 0.050 0.950 14 C 0.011 3.989 15 N -0.926 5.926 16 Si 0.954 3.046 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.268 1.268 20 H 0.037 0.963 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.086 0.914 24 H 0.063 0.937 25 H 0.148 0.852 26 H 0.136 0.864 27 H 0.144 0.856 28 H 0.136 0.864 29 H 0.002 0.998 30 H 0.021 0.979 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.200 3.618 -8.766 9.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.129 4.129 3 C -0.055 4.055 4 C -0.152 4.152 5 C -0.102 4.102 6 C -0.211 4.211 7 C 0.261 3.739 8 O -0.381 6.381 9 C -0.092 4.092 10 C -0.083 4.083 11 C 0.021 3.979 12 C -0.556 4.556 13 H 0.069 0.931 14 C -0.188 4.188 15 N -0.566 5.566 16 Si 0.779 3.221 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.192 1.192 20 H 0.056 0.944 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.104 0.896 24 H 0.082 0.918 25 H 0.165 0.835 26 H 0.154 0.846 27 H 0.160 0.840 28 H 0.154 0.846 29 H 0.020 0.980 30 H 0.039 0.961 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.266 3.838 -9.162 9.937 hybrid contribution 0.510 -0.720 0.915 1.271 sum 0.777 3.119 -8.247 8.851 Atomic orbital electron populations 1.21649 0.94048 1.02166 1.01445 1.20630 0.96848 0.92358 1.03083 1.20257 0.96065 0.96588 0.92565 1.21201 1.00989 0.95217 0.97797 1.21445 0.96654 0.94277 0.97786 1.21041 1.07508 0.98510 0.94090 1.24499 0.69831 0.85866 0.93735 1.90461 1.39598 1.69639 1.38400 1.21413 0.95939 0.94198 0.97637 1.20350 0.97601 0.94248 0.96051 1.18136 0.96328 0.94447 0.88943 1.21276 0.98774 1.28974 1.06614 0.93129 1.25766 0.98408 0.97705 0.96901 1.70057 1.27476 1.43109 1.16005 0.85608 0.79616 0.78352 0.78486 1.20003 1.20759 1.19234 0.94407 0.91491 0.91417 0.89596 0.91804 0.83476 0.84650 0.84012 0.84600 0.97961 0.96083 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 9.72 71.98 0.70 -3.44 16 2 C -0.09 -3.13 5.37 29.85 0.16 -2.97 16 3 C -0.05 -1.97 5.14 -19.79 -0.10 -2.07 16 4 C -0.13 -4.07 9.66 22.23 0.21 -3.86 16 5 C -0.08 -2.53 9.60 22.58 0.22 -2.32 16 6 C -0.21 -6.53 5.87 -20.15 -0.12 -6.65 16 7 C 0.40 10.48 11.46 70.17 0.80 11.29 16 8 O -0.50 -16.12 17.17 -2.94 -0.05 -16.17 16 9 C -0.07 -2.60 9.42 22.58 0.21 -2.39 16 10 C -0.08 -3.37 5.06 -19.91 -0.10 -3.47 16 11 C 0.06 2.88 4.43 29.10 0.13 3.01 16 12 C -0.52 -27.81 8.31 25.60 0.21 -27.60 16 13 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 14 C 0.01 0.58 5.46 84.66 0.46 1.04 16 15 N -0.93 -53.40 13.29 21.45 0.28 -53.11 16 16 Si 0.95 42.78 29.54 68.60 2.03 44.81 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H 0.04 1.32 6.82 -2.39 -0.02 1.30 16 21 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 23 H 0.09 2.41 8.05 -2.39 -0.02 2.39 16 24 H 0.06 2.64 6.39 -2.39 -0.02 2.63 16 25 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 26 H 0.14 3.71 7.65 -2.91 -0.02 3.69 16 27 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 28 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 29 H 0.00 0.11 8.05 -2.39 -0.02 0.09 16 30 H 0.02 1.09 5.60 -2.39 -0.01 1.08 16 31 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -62.61 269.86 6.16 -56.45 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 1.11 Total: 7.45 kcal Atomic # 6 Polarization: -42.22 SS G_CDS: 2.79 Total: -39.43 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.28 Total: -53.11 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.05 Total: -16.17 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -62.61 6.16 -56.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396097257.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.917 kcal (2) G-P(sol) polarization free energy of solvation -62.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds