Wall clock time and date at job start Mon Mar 30 2020 03:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.46729 * 2 1 4 4 C 1.38429 * 119.91383 * 264.99826 * 3 2 1 5 5 C 1.38378 * 120.34785 * 179.72541 * 4 3 2 6 6 C 1.37910 * 120.17541 * 0.23805 * 5 4 3 7 7 C 1.39831 * 119.82063 * 0.02562 * 6 5 4 8 8 C 1.47165 * 120.17117 * 180.02562 * 7 6 5 9 9 O 1.21251 * 120.00048 * 354.66177 * 8 7 6 10 10 C 1.37864 * 119.91147 * 85.23873 * 3 2 1 11 11 C 1.50701 * 120.09212 * 0.04091 * 10 3 2 12 12 C 1.50698 * 109.46932 * 265.03329 * 11 10 3 13 13 H 1.08007 * 120.00095 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00029 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99850 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00137 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47131 * 59.99488 * 16 14 12 18 18 H 1.48502 * 109.47223 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46936 * 299.99417 * 16 14 12 20 20 H 1.08999 * 109.47026 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46726 * 299.99778 * 1 2 3 22 22 H 1.08997 * 109.47227 * 59.99956 * 1 2 3 23 23 H 1.08997 * 109.46726 * 240.00222 * 2 1 3 24 24 H 1.08997 * 109.47227 * 120.00044 * 2 1 3 25 25 H 1.08004 * 119.82169 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.91343 * 180.25811 * 5 4 3 27 27 H 1.07993 * 120.08779 * 180.02562 * 6 5 4 28 28 H 1.08001 * 120.00428 * 174.65756 * 8 7 6 29 29 H 1.09001 * 109.46989 * 25.02892 * 11 10 3 30 30 H 1.08998 * 109.47273 * 145.03171 * 11 10 3 31 31 H 0.97010 * 120.00463 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3610 2.0369 -1.1953 5 6 2.8176 3.3431 -1.2062 6 6 2.9534 4.0399 -0.0239 7 6 2.6286 3.4228 1.1881 8 6 2.7700 4.1594 2.4543 9 8 3.2594 5.2688 2.4590 10 6 2.1679 2.1021 1.1909 11 6 1.8155 1.4275 2.4916 12 6 0.3985 1.7741 2.8694 13 1 -0.1882 2.4188 2.2316 14 6 -0.1488 1.2692 4.0298 15 7 0.5657 0.4846 4.8066 16 14 -1.9051 1.6994 4.4985 17 1 -2.8297 1.2342 3.4337 18 1 -2.2524 1.0346 5.7802 19 1 -2.0295 3.1710 4.6541 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 2.2559 1.4967 -2.1246 26 1 3.0681 3.8182 -2.1432 27 1 3.3095 5.0594 -0.0341 28 1 2.4378 3.7119 3.3794 29 1 1.9072 0.3474 2.3772 30 1 2.4939 1.7690 3.2734 31 1 0.1806 0.1290 5.6229 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396098964.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:06 Heat of formation + Delta-G solvation = -46.165705 kcal Electronic energy + Delta-G solvation = -14436.368645 eV Core-core repulsion = 12067.469368 eV Total energy + Delta-G solvation = -2368.899277 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.96183 -39.27929 -35.67901 -34.68789 -33.13820 -30.42848 -28.98702 -25.91747 -25.17605 -24.20014 -21.46599 -20.80966 -18.43739 -17.88263 -17.23983 -16.61854 -15.96308 -15.63259 -15.32072 -14.97510 -14.38378 -14.33685 -14.16439 -13.60566 -13.28925 -13.15727 -12.82101 -12.55462 -12.49405 -12.40301 -11.93946 -11.64047 -11.52690 -11.17539 -10.63410 -10.47036 -9.68115 -9.38495 -8.15694 -6.24702 -0.21070 0.59224 1.42950 1.44277 1.51114 1.55385 2.42373 2.98461 3.16940 3.49964 3.93180 4.04617 4.23682 4.36642 4.40429 4.64092 4.68908 4.71070 4.79352 5.02357 5.10330 5.21905 5.27120 5.35264 5.47135 5.56430 5.60557 5.69380 5.80109 5.96384 6.10485 6.23897 6.47395 6.84770 7.41648 8.93065 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.011597 C = 0.008825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.795842 B = 2413.853048 C = 3172.204425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.074 4.074 3 C -0.114 4.114 4 C -0.076 4.076 5 C -0.147 4.147 6 C -0.075 4.075 7 C -0.217 4.217 8 C 0.396 3.604 9 O -0.507 6.507 10 C -0.007 4.007 11 C 0.048 3.952 12 C -0.508 4.508 13 H 0.052 0.948 14 C 0.018 3.982 15 N -0.922 5.922 16 Si 0.946 3.054 17 H -0.268 1.268 18 H -0.285 1.285 19 H -0.274 1.274 20 H 0.059 0.941 21 H 0.050 0.950 22 H 0.058 0.942 23 H 0.090 0.910 24 H 0.057 0.943 25 H 0.156 0.844 26 H 0.157 0.843 27 H 0.130 0.870 28 H 0.107 0.893 29 H 0.027 0.973 30 H 0.009 0.991 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.545 0.343 -11.394 11.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.114 4.114 4 C -0.094 4.094 5 C -0.164 4.164 6 C -0.093 4.093 7 C -0.218 4.218 8 C 0.259 3.741 9 O -0.385 6.385 10 C -0.007 4.007 11 C 0.011 3.989 12 C -0.546 4.546 13 H 0.070 0.930 14 C -0.182 4.182 15 N -0.562 5.562 16 Si 0.771 3.229 17 H -0.193 1.193 18 H -0.211 1.211 19 H -0.199 1.199 20 H 0.078 0.922 21 H 0.069 0.931 22 H 0.077 0.923 23 H 0.108 0.892 24 H 0.076 0.924 25 H 0.173 0.827 26 H 0.175 0.825 27 H 0.147 0.853 28 H 0.123 0.877 29 H 0.045 0.955 30 H 0.028 0.972 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.788 0.818 -11.221 11.392 hybrid contribution -0.911 0.042 0.915 1.292 sum 0.877 0.860 -10.306 10.379 Atomic orbital electron populations 1.21772 0.94956 1.01694 1.02204 1.20459 0.96388 0.91799 1.02492 1.20015 1.01071 0.97745 0.92531 1.21597 0.95214 0.94899 0.97707 1.21320 1.01981 0.94904 0.98225 1.21492 0.96101 0.99930 0.91809 1.20703 1.08732 0.96191 0.96151 1.24329 0.71344 0.84660 0.93789 1.90377 1.35878 1.21636 1.90576 1.20607 0.90533 0.92531 0.97027 1.18290 0.95865 0.95772 0.88941 1.21048 0.97789 1.29504 1.06229 0.92983 1.25643 1.01120 0.94987 0.96402 1.70031 1.38311 1.33813 1.14013 0.85790 0.80935 0.78495 0.77649 1.19279 1.21058 1.19907 0.92182 0.93085 0.92324 0.89195 0.92398 0.82675 0.82499 0.85254 0.87711 0.95519 0.97237 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 9.90 71.98 0.71 -4.14 16 2 C -0.07 -2.36 5.54 29.85 0.17 -2.19 16 3 C -0.11 -3.89 5.13 -19.91 -0.10 -3.99 16 4 C -0.08 -2.07 9.67 22.35 0.22 -1.86 16 5 C -0.15 -3.89 10.03 22.23 0.22 -3.67 16 6 C -0.08 -2.47 9.60 22.58 0.22 -2.25 16 7 C -0.22 -8.51 5.87 -20.15 -0.12 -8.63 16 8 C 0.40 16.41 10.83 70.17 0.76 17.17 16 9 O -0.51 -22.02 17.18 -2.94 -0.05 -22.07 16 10 C -0.01 -0.27 5.11 -19.55 -0.10 -0.37 16 11 C 0.05 2.30 4.07 29.10 0.12 2.41 16 12 C -0.51 -26.13 7.20 25.60 0.18 -25.95 16 13 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 14 C 0.02 0.94 5.46 84.65 0.46 1.40 16 15 N -0.92 -51.78 13.28 21.45 0.28 -51.49 16 16 Si 0.95 42.15 29.54 68.60 2.03 44.17 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 21 H 0.05 2.06 6.14 -2.39 -0.01 2.05 16 22 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.09 2.20 8.05 -2.39 -0.02 2.18 16 24 H 0.06 2.10 6.11 -2.39 -0.01 2.08 16 25 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 26 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 27 H 0.13 4.00 7.66 -2.91 -0.02 3.98 16 28 H 0.11 4.54 6.52 -2.91 -0.02 4.53 16 29 H 0.03 1.35 5.84 -2.39 -0.01 1.33 16 30 H 0.01 0.48 6.71 -2.39 -0.02 0.47 16 31 H 0.26 14.18 8.31 -92.70 -0.77 13.40 16 Total: -1.00 -59.65 265.19 6.12 -53.53 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 1.12 Total: 7.93 kcal Atomic # 6 Polarization: -34.81 SS G_CDS: 2.74 Total: -32.07 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.28 Total: -51.49 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.05 Total: -22.07 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -59.65 6.12 -53.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396098964.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.363 kcal (2) G-P(sol) polarization free energy of solvation -59.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds