Wall clock time and date at job start Mon Mar 30 2020 03:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47388 * 2 1 4 4 C 1.50699 * 109.47095 * 120.00257 * 2 1 3 5 5 C 1.38469 * 119.92046 * 299.97496 * 4 2 1 6 6 C 1.38416 * 120.31172 * 180.02562 * 5 4 2 7 7 C 1.37913 * 120.15804 * 359.97438 * 6 5 4 8 8 C 1.39722 * 119.84071 * 0.03960 * 7 6 5 9 9 C 1.47824 * 120.15429 * 180.02562 * 8 7 6 10 10 O 1.21763 * 119.99800 * 179.97438 * 9 8 7 11 11 C 1.41804 * 119.99751 * 359.95769 * 9 8 7 12 12 H 1.07991 * 120.00247 * 353.21146 * 11 9 8 13 13 C 1.40350 * 119.99505 * 173.21518 * 11 9 8 14 14 N 1.30533 * 120.00529 * 6.09813 * 13 11 9 15 15 Si 1.86805 * 119.99887 * 186.10137 * 13 11 9 16 16 H 1.48492 * 109.47359 * 94.98555 * 15 13 11 17 17 H 1.48498 * 109.47015 * 214.98946 * 15 13 11 18 18 H 1.48500 * 109.46799 * 334.98449 * 15 13 11 19 19 C 1.37869 * 119.92569 * 119.99712 * 4 2 1 20 20 H 1.09004 * 109.46991 * 300.00209 * 1 2 3 21 21 H 1.09001 * 109.46767 * 59.99656 * 1 2 3 22 22 H 1.08998 * 109.47471 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46991 * 239.99791 * 2 1 3 24 24 H 1.09004 * 109.47225 * 59.99934 * 3 2 1 25 25 H 1.09001 * 109.47247 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47447 * 299.99927 * 3 2 1 27 27 H 1.08001 * 119.84518 * 0.02562 * 5 4 2 28 28 H 1.08001 * 119.92518 * 179.97438 * 6 5 4 29 29 H 1.08003 * 120.08126 * 180.02562 * 7 6 5 30 30 H 0.97001 * 120.00078 * 179.97438 * 14 13 11 31 31 H 1.07998 * 120.07531 * 359.70012 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6972 -0.2357 2.4873 6 6 2.1546 -0.8816 3.6228 7 6 2.9477 -2.0042 3.5094 8 6 3.2901 -2.4886 2.2444 9 6 4.1393 -3.6916 2.1148 10 8 4.4355 -4.1116 1.0109 11 6 4.6093 -4.3562 3.2760 12 1 4.4401 -3.9241 4.2511 13 6 5.2942 -5.5755 3.1578 14 7 5.6035 -6.0387 1.9773 15 14 5.7634 -6.5355 4.6901 16 1 4.7214 -7.5546 4.9741 17 1 7.0685 -7.2095 4.4717 18 1 5.8733 -5.6055 5.8425 19 6 2.8248 -1.8313 1.1021 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1301 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.0761 0.6427 2.5820 28 1 1.8898 -0.5057 4.6001 29 1 3.3036 -2.5074 4.3963 30 1 6.0772 -6.8812 1.8957 31 1 3.0817 -2.2031 0.1212 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694867092.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:15 Heat of formation + Delta-G solvation = -59.175647 kcal Electronic energy + Delta-G solvation = -14011.852865 eV Core-core repulsion = 11642.389435 eV Total energy + Delta-G solvation = -2369.463430 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.50585 -38.49847 -36.04932 -34.84147 -31.74683 -31.01695 -28.66515 -27.94495 -24.83730 -23.64328 -22.06951 -20.46754 -18.35086 -17.90749 -16.82337 -16.25140 -15.81195 -15.28197 -14.87408 -14.67570 -14.41698 -14.33013 -14.10859 -13.32040 -13.16440 -13.03511 -12.87570 -12.61429 -12.54825 -12.09334 -12.06093 -11.98815 -11.60324 -11.43924 -11.03234 -9.66796 -9.64698 -9.45726 -8.39182 -7.12355 0.26301 0.58620 1.35945 1.36971 1.54358 2.18516 2.21961 2.90395 3.69610 3.77008 3.94148 4.18729 4.31605 4.35477 4.35642 4.55221 4.66311 4.71898 4.85258 4.97773 5.01053 5.11832 5.14942 5.22247 5.31122 5.35104 5.43271 5.62336 5.76702 5.81227 5.93601 6.23068 6.65372 6.75700 8.20088 8.44731 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.051361 B = 0.006901 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.028886 B = 4056.272153 C = 4411.847635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.059 4.059 3 C -0.136 4.136 4 C -0.087 4.087 5 C -0.111 4.111 6 C -0.123 4.123 7 C -0.108 4.108 8 C -0.144 4.144 9 C 0.357 3.643 10 O -0.601 6.601 11 C -0.543 4.543 12 H 0.096 0.904 13 C 0.020 3.980 14 N -0.789 5.789 15 Si 1.000 3.000 16 H -0.259 1.259 17 H -0.267 1.267 18 H -0.243 1.243 19 C -0.116 4.116 20 H 0.071 0.929 21 H 0.075 0.925 22 H 0.040 0.960 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.075 0.925 27 H 0.156 0.844 28 H 0.157 0.843 29 H 0.128 0.872 30 H 0.283 0.717 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.347 11.500 3.825 14.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.078 4.078 3 C -0.193 4.193 4 C -0.087 4.087 5 C -0.129 4.129 6 C -0.140 4.140 7 C -0.126 4.126 8 C -0.145 4.145 9 C 0.258 3.742 10 O -0.496 6.496 11 C -0.573 4.573 12 H 0.114 0.886 13 C -0.198 4.198 14 N -0.418 5.418 15 Si 0.818 3.182 16 H -0.183 1.183 17 H -0.191 1.191 18 H -0.166 1.166 19 C -0.135 4.135 20 H 0.090 0.910 21 H 0.094 0.906 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.090 0.910 25 H 0.060 0.940 26 H 0.094 0.906 27 H 0.173 0.827 28 H 0.175 0.825 29 H 0.146 0.854 30 H 0.093 0.907 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.157 11.228 3.162 14.234 hybrid contribution 0.616 -0.989 0.103 1.170 sum -7.541 10.239 3.265 13.128 Atomic orbital electron populations 1.21813 0.92673 1.01589 1.03271 1.20179 0.97228 0.96648 0.93710 1.21811 1.00425 0.93835 1.03269 1.20063 0.97199 0.94667 0.96776 1.21359 1.00136 1.00507 0.90851 1.21467 0.97441 0.94920 1.00185 1.21590 0.97885 0.96902 0.96230 1.21527 0.99730 0.98393 0.94851 1.19007 0.81307 0.83961 0.89946 1.90415 1.60443 1.68054 1.30683 1.21479 1.33536 1.06344 0.95958 0.88580 1.27374 0.92915 0.98541 1.01014 1.70117 1.26289 1.17809 1.27594 0.84980 0.78446 0.78133 0.76692 1.18313 1.19133 1.16582 1.21215 0.98537 0.96292 0.97426 0.90990 0.90578 0.94066 0.92233 0.90985 0.94045 0.90586 0.82666 0.82493 0.85400 0.90657 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.01 71.98 0.65 -2.27 16 2 C -0.06 -1.59 3.09 -11.54 -0.04 -1.63 16 3 C -0.14 -2.91 9.01 71.98 0.65 -2.27 16 4 C -0.09 -3.01 4.78 -19.90 -0.10 -3.10 16 5 C -0.11 -3.22 8.71 22.37 0.19 -3.02 16 6 C -0.12 -3.81 10.03 22.24 0.22 -3.58 16 7 C -0.11 -4.42 9.44 22.55 0.21 -4.21 16 8 C -0.14 -7.31 5.88 -20.01 -0.12 -7.43 16 9 C 0.36 22.12 6.91 25.69 0.18 22.29 16 10 O -0.60 -42.30 14.93 -4.55 -0.07 -42.37 16 11 C -0.54 -31.40 8.84 23.67 0.21 -31.19 16 12 H 0.10 4.93 6.07 -2.92 -0.02 4.91 16 13 C 0.02 1.13 5.50 85.40 0.47 1.59 16 14 N -0.79 -48.10 11.76 21.89 0.26 -47.85 16 15 Si 1.00 39.89 29.57 68.60 2.03 41.92 16 16 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 17 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 18 H -0.24 -8.92 7.11 99.48 0.71 -8.21 16 19 C -0.12 -5.37 9.22 22.55 0.21 -5.16 16 20 H 0.07 1.30 7.38 -2.38 -0.02 1.28 16 21 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.06 1.77 7.87 -2.38 -0.02 1.75 16 24 H 0.07 1.30 7.38 -2.38 -0.02 1.28 16 25 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.16 3.17 7.08 -2.91 -0.02 3.15 16 28 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 29 H 0.13 5.06 6.23 -2.91 -0.02 5.04 16 30 H 0.28 15.31 8.29 -92.71 -0.77 14.54 16 31 H 0.09 4.62 7.54 -2.91 -0.02 4.60 16 Total: -1.00 -76.56 266.43 6.08 -70.48 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 1.12 Total: 17.79 kcal Atomic # 6 Polarization: -42.72 SS G_CDS: 2.74 Total: -39.97 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.26 Total: -47.85 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -0.07 Total: -42.37 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -76.56 6.08 -70.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694867092.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.301 kcal (2) G-P(sol) polarization free energy of solvation -76.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds