Wall clock time and date at job start Mon Mar 30 2020 02:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48497 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47403 * 299.99826 * 3 2 1 6 6 H 1.48503 * 109.47061 * 60.00061 * 3 2 1 7 7 C 1.39946 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99775 * 161.47550 * 7 2 1 9 9 C 1.41402 * 120.00127 * 341.47866 * 7 2 1 10 10 C 1.40720 * 120.24135 * 335.88967 * 9 7 2 11 11 C 1.37619 * 119.74433 * 179.74571 * 10 9 7 12 12 C 1.38635 * 120.24325 * 0.53509 * 11 10 9 13 13 C 1.50706 * 119.74661 * 179.76158 * 12 11 10 14 14 O 1.42902 * 109.46798 * 269.97822 * 13 12 11 15 15 C 1.42898 * 113.99565 * 179.97438 * 14 13 12 16 16 C 1.52997 * 117.49930 * 218.74268 * 15 14 13 17 17 C 1.53004 * 117.49648 * 150.08518 * 15 14 13 18 18 C 1.38630 * 120.50538 * 359.73785 * 12 11 10 19 19 C 1.37615 * 120.24726 * 359.97438 * 18 12 11 20 20 H 0.96994 * 119.99932 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.12638 * 359.97438 * 10 9 7 22 22 H 1.07995 * 119.87455 * 180.27215 * 11 10 9 23 23 H 1.08994 * 109.47171 * 29.97603 * 13 12 11 24 24 H 1.09003 * 109.47075 * 149.97985 * 13 12 11 25 25 H 1.09000 * 115.55358 * 4.41995 * 15 14 13 26 26 H 1.09003 * 117.49821 * 0.02562 * 16 15 14 27 27 H 1.09007 * 117.49872 * 145.02214 * 16 15 14 28 28 H 1.08995 * 117.49815 * 214.97931 * 17 15 14 29 29 H 1.09005 * 117.49982 * 359.97438 * 17 15 14 30 30 H 1.08005 * 119.87877 * 179.97438 * 18 12 11 31 31 H 1.08002 * 120.12958 * 179.97438 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0081 -1.2119 0.0005 8 1 3.0461 -1.2362 -0.2966 9 6 1.3560 -2.4047 0.3901 10 6 0.2297 -2.3542 1.2321 11 6 -0.4001 -3.5209 1.6006 12 6 0.0777 -4.7434 1.1544 13 6 -0.6175 -6.0146 1.5692 14 8 -0.0389 -6.4998 2.7824 15 6 -0.6296 -7.7080 3.2654 16 6 -0.8184 -7.8468 4.7773 17 6 0.2630 -8.6611 4.0628 18 6 1.1899 -4.8055 0.3291 19 6 1.8320 -3.6511 -0.0568 20 1 -0.4850 0.8400 0.0004 21 1 -0.1411 -1.4031 1.5849 22 1 -1.2673 -3.4843 2.2432 23 1 -1.6772 -5.8143 1.7267 24 1 -0.5018 -6.7641 0.7863 25 1 -1.3888 -8.1506 2.6207 26 1 -0.4924 -7.0163 5.4036 27 1 -1.7018 -8.3811 5.1273 28 1 0.0907 -9.7307 3.9430 29 1 1.3009 -8.3667 4.2186 30 1 1.5538 -5.7634 -0.0122 31 1 2.6986 -3.7017 -0.6994 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713218599.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:21 Heat of formation + Delta-G solvation = -7.138476 kcal Electronic energy + Delta-G solvation = -13700.860675 eV Core-core repulsion = 11333.653746 eV Total energy + Delta-G solvation = -2367.206929 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.34609 -37.32845 -34.78091 -33.55559 -30.37352 -29.26886 -26.77530 -23.56103 -22.31151 -21.65966 -20.99416 -19.99034 -17.31664 -16.79469 -15.48931 -15.17056 -14.60190 -14.17945 -13.81275 -13.47346 -13.03633 -12.59243 -11.97275 -11.85169 -11.47197 -11.37996 -11.22838 -11.05268 -10.89864 -10.49973 -10.41775 -10.28664 -9.58899 -9.40198 -9.14859 -8.74714 -7.47129 -7.36584 -6.80303 -4.38114 2.66274 3.05917 3.08537 3.10346 3.13347 3.91138 3.96333 4.04139 4.64075 4.92612 5.07567 5.38756 5.57553 5.67485 5.73857 5.82354 5.86914 6.03734 6.18396 6.21337 6.37458 6.40468 6.94428 7.04994 7.27408 7.35447 7.60227 7.69449 7.86934 8.03973 8.11356 8.27701 8.62132 8.86860 8.95586 10.14336 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.062853 B = 0.005482 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.375218 B = 5106.484263 C = 5215.517199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.460 4.460 8 H 0.079 0.921 9 C 0.116 3.884 10 C -0.171 4.171 11 C -0.079 4.079 12 C -0.227 4.227 13 C 0.129 3.871 14 O -0.351 6.351 15 C 0.019 3.981 16 C -0.195 4.195 17 C -0.190 4.190 18 C -0.068 4.068 19 C -0.231 4.231 20 H 0.281 0.719 21 H 0.118 0.882 22 H 0.087 0.913 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.995 -8.114 4.010 9.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.196 1.196 7 C -0.489 4.489 8 H 0.097 0.903 9 C 0.113 3.887 10 C -0.190 4.190 11 C -0.097 4.097 12 C -0.228 4.228 13 C 0.054 3.946 14 O -0.270 6.270 15 C -0.040 4.040 16 C -0.232 4.232 17 C -0.227 4.227 18 C -0.087 4.087 19 C -0.251 4.251 20 H 0.092 0.908 21 H 0.136 0.864 22 H 0.106 0.894 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.121 0.879 26 H 0.117 0.883 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.049 -7.845 4.071 9.073 hybrid contribution 0.099 0.631 -0.125 0.651 sum -1.950 -7.214 3.946 8.451 Atomic orbital electron populations 1.69843 1.07668 1.29249 1.34665 1.25946 0.94716 1.01435 0.92108 0.86269 0.81078 0.80852 0.78592 1.18321 1.19950 1.19634 1.19671 0.98468 0.91368 1.39413 0.90264 1.17668 0.90860 0.92050 0.88093 1.21293 0.99538 0.96761 1.01423 1.20529 0.98267 0.92603 0.98338 1.18751 1.02748 0.91992 1.09303 1.21184 0.95207 0.93864 0.84319 1.88059 1.59311 1.37716 1.41927 1.22608 0.99038 0.89559 0.92777 1.23356 1.00638 1.03064 0.96167 1.23300 0.97601 0.96931 1.04845 1.20373 0.94597 0.96491 0.97206 1.20949 1.03910 0.92813 1.07386 0.90833 0.86389 0.89440 0.94065 0.94156 0.87852 0.88316 0.88740 0.88674 0.88322 0.89417 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.42 10.98 55.55 0.61 -19.81 16 2 C 0.08 1.92 5.13 -17.34 -0.09 1.83 16 3 Si 0.91 18.62 29.60 -169.99 -5.03 13.59 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.46 -12.33 9.05 -37.74 -0.34 -12.67 16 8 H 0.08 2.04 7.91 -52.49 -0.42 1.63 16 9 C 0.12 3.15 5.58 -106.82 -0.60 2.56 16 10 C -0.17 -4.55 8.70 -38.87 -0.34 -4.88 16 11 C -0.08 -1.91 9.67 -39.66 -0.38 -2.30 16 12 C -0.23 -5.22 5.53 -104.33 -0.58 -5.79 16 13 C 0.13 2.46 5.92 36.01 0.21 2.67 16 14 O -0.35 -6.73 10.58 -35.23 -0.37 -7.10 16 15 C 0.02 0.28 6.44 -26.73 -0.17 0.10 16 16 C -0.19 -2.44 10.48 -26.70 -0.28 -2.72 16 17 C -0.19 -2.35 10.48 -26.69 -0.28 -2.63 16 18 C -0.07 -1.60 9.67 -39.66 -0.38 -1.98 16 19 C -0.23 -5.83 9.80 -38.88 -0.38 -6.21 16 20 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 21 H 0.12 3.21 6.16 -52.49 -0.32 2.89 16 22 H 0.09 1.94 8.06 -52.49 -0.42 1.51 16 23 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16 24 H 0.04 0.69 8.08 -51.93 -0.42 0.28 16 25 H 0.10 1.28 7.93 -51.93 -0.41 0.87 16 26 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 31 H 0.09 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 272.12 15.07 4.10 4.10 Total: -1.00 -28.22 272.12 -8.38 -36.60 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.08 Total: 4.65 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: -3.61 Total: -32.02 kcal Atomic # 7 Polarization: -20.42 SS G_CDS: 0.61 Total: -19.81 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.37 Total: -7.10 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.22 -8.38 -36.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713218599.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.461 kcal (2) G-P(sol) polarization free energy of solvation -28.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds