Wall clock time and date at job start Mon Mar 30 2020 02:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48497 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47403 * 299.99826 * 3 2 1 6 6 H 1.48503 * 109.47061 * 60.00061 * 3 2 1 7 7 C 1.39946 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99775 * 161.47550 * 7 2 1 9 9 C 1.41402 * 120.00127 * 341.47866 * 7 2 1 10 10 C 1.40720 * 120.24135 * 335.88967 * 9 7 2 11 11 C 1.37619 * 119.74433 * 179.74571 * 10 9 7 12 12 C 1.38635 * 120.24325 * 0.53509 * 11 10 9 13 13 C 1.50706 * 119.74661 * 179.76158 * 12 11 10 14 14 O 1.42902 * 109.46798 * 269.97822 * 13 12 11 15 15 C 1.42898 * 113.99565 * 179.97438 * 14 13 12 16 16 C 1.52997 * 117.49930 * 218.74268 * 15 14 13 17 17 C 1.53004 * 117.49648 * 150.08518 * 15 14 13 18 18 C 1.38630 * 120.50538 * 359.73785 * 12 11 10 19 19 C 1.37615 * 120.24726 * 359.97438 * 18 12 11 20 20 H 0.96994 * 119.99932 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.12638 * 359.97438 * 10 9 7 22 22 H 1.07995 * 119.87455 * 180.27215 * 11 10 9 23 23 H 1.08994 * 109.47171 * 29.97603 * 13 12 11 24 24 H 1.09003 * 109.47075 * 149.97985 * 13 12 11 25 25 H 1.09000 * 115.55358 * 4.41995 * 15 14 13 26 26 H 1.09003 * 117.49821 * 0.02562 * 16 15 14 27 27 H 1.09007 * 117.49872 * 145.02214 * 16 15 14 28 28 H 1.08995 * 117.49815 * 214.97931 * 17 15 14 29 29 H 1.09005 * 117.49982 * 359.97438 * 17 15 14 30 30 H 1.08005 * 119.87877 * 179.97438 * 18 12 11 31 31 H 1.08002 * 120.12958 * 179.97438 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0081 -1.2119 0.0005 8 1 3.0461 -1.2362 -0.2966 9 6 1.3560 -2.4047 0.3901 10 6 0.2297 -2.3542 1.2321 11 6 -0.4001 -3.5209 1.6006 12 6 0.0777 -4.7434 1.1544 13 6 -0.6175 -6.0146 1.5692 14 8 -0.0389 -6.4998 2.7824 15 6 -0.6296 -7.7080 3.2654 16 6 -0.8184 -7.8468 4.7773 17 6 0.2630 -8.6611 4.0628 18 6 1.1899 -4.8055 0.3291 19 6 1.8320 -3.6511 -0.0568 20 1 -0.4850 0.8400 0.0004 21 1 -0.1411 -1.4031 1.5849 22 1 -1.2673 -3.4843 2.2432 23 1 -1.6772 -5.8143 1.7267 24 1 -0.5018 -6.7641 0.7863 25 1 -1.3888 -8.1506 2.6207 26 1 -0.4924 -7.0163 5.4036 27 1 -1.7018 -8.3811 5.1273 28 1 0.0907 -9.7307 3.9430 29 1 1.3009 -8.3667 4.2186 30 1 1.5538 -5.7634 -0.0122 31 1 2.6986 -3.7017 -0.6994 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713218599.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:21 Heat of formation + Delta-G solvation = -21.981190 kcal Electronic energy + Delta-G solvation = -13701.504303 eV Core-core repulsion = 11333.653746 eV Total energy + Delta-G solvation = -2367.850558 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.85106 -38.92463 -36.19489 -35.26722 -32.20760 -31.19628 -28.55598 -25.32557 -23.26745 -22.92229 -22.76090 -21.83851 -19.26126 -18.02754 -17.25738 -16.65207 -16.14478 -15.75959 -15.33509 -14.83634 -14.77798 -14.30045 -13.85433 -13.47929 -13.10807 -12.84518 -12.77777 -12.42975 -12.38560 -12.09105 -12.04258 -11.45669 -11.33653 -11.26540 -11.02241 -9.96495 -9.41667 -9.31285 -8.68486 -6.38024 0.84657 1.11542 1.37752 1.47067 1.53710 2.19657 2.54970 2.94260 2.98181 3.73793 3.94643 4.08795 4.16484 4.29624 4.40452 4.49720 4.60141 4.64752 4.75757 4.76972 5.00910 5.03592 5.13245 5.26818 5.33037 5.42318 5.66914 5.90689 6.06663 6.19008 6.33921 6.45642 6.65869 6.89854 6.99245 8.29307 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.062853 B = 0.005482 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.375218 B = 5106.484263 C = 5215.517199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.036 3.964 3 Si 0.985 3.015 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.264 1.264 7 C -0.499 4.499 8 H 0.077 0.923 9 C 0.083 3.917 10 C -0.196 4.196 11 C -0.086 4.086 12 C -0.225 4.225 13 C 0.135 3.865 14 O -0.382 6.382 15 C -0.008 4.008 16 C -0.189 4.189 17 C -0.180 4.180 18 C -0.072 4.072 19 C -0.248 4.248 20 H 0.290 0.710 21 H 0.102 0.898 22 H 0.105 0.895 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.128 0.872 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.372 -9.381 4.412 10.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.188 1.188 7 C -0.528 4.528 8 H 0.095 0.905 9 C 0.081 3.919 10 C -0.215 4.215 11 C -0.105 4.105 12 C -0.226 4.226 13 C 0.060 3.940 14 O -0.302 6.302 15 C -0.066 4.066 16 C -0.226 4.226 17 C -0.217 4.217 18 C -0.090 4.090 19 C -0.268 4.268 20 H 0.101 0.899 21 H 0.120 0.880 22 H 0.123 0.877 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.145 0.855 26 H 0.102 0.898 27 H 0.141 0.859 28 H 0.143 0.857 29 H 0.103 0.897 30 H 0.135 0.865 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.434 -9.137 4.478 10.462 hybrid contribution 0.160 0.855 -0.193 0.891 sum -2.273 -8.282 4.284 9.598 Atomic orbital electron populations 1.69884 1.09126 1.30732 1.34944 1.26817 0.95498 1.04668 0.90992 0.85129 0.79402 0.75918 0.79077 1.18159 1.18747 1.18816 1.19916 0.98713 0.92644 1.41507 0.90480 1.18031 0.91691 0.93208 0.88971 1.21278 1.00518 0.97057 1.02674 1.20797 0.98664 0.92612 0.98384 1.19255 1.02105 0.93466 1.07799 1.21079 0.95212 0.92429 0.85259 1.87963 1.60373 1.40076 1.41806 1.23011 1.00704 0.88677 0.94200 1.23443 1.01800 1.02790 0.94577 1.23397 0.96746 0.98244 1.03325 1.20726 0.94426 0.97100 0.96757 1.21183 1.04611 0.93074 1.07910 0.89938 0.87983 0.87710 0.92630 0.91993 0.85470 0.89829 0.85888 0.85683 0.89655 0.86482 0.88163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.55 10.98 21.83 0.24 -43.31 16 2 C 0.04 1.83 5.13 85.26 0.44 2.27 16 3 Si 0.98 38.54 29.60 68.60 2.03 40.57 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 6 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 7 C -0.50 -27.65 9.05 23.46 0.21 -27.44 16 8 H 0.08 4.12 7.91 -2.91 -0.02 4.10 16 9 C 0.08 4.69 5.58 -21.29 -0.12 4.57 16 10 C -0.20 -10.77 8.70 22.73 0.20 -10.57 16 11 C -0.09 -4.21 9.67 22.22 0.21 -4.00 16 12 C -0.23 -10.15 5.53 -19.67 -0.11 -10.26 16 13 C 0.14 4.83 5.92 71.24 0.42 5.25 16 14 O -0.38 -13.92 10.58 -148.98 -1.58 -15.49 16 15 C -0.01 -0.22 6.44 30.59 0.20 -0.02 16 16 C -0.19 -4.21 10.48 30.62 0.32 -3.89 16 17 C -0.18 -3.94 10.48 30.62 0.32 -3.62 16 18 C -0.07 -3.31 9.67 22.22 0.21 -3.10 16 19 C -0.25 -12.74 9.80 22.73 0.22 -12.52 16 20 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 21 H 0.10 5.82 6.16 -2.91 -0.02 5.80 16 22 H 0.10 4.62 8.06 -2.91 -0.02 4.60 16 23 H 0.06 1.81 8.08 -2.39 -0.02 1.79 16 24 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 25 H 0.13 2.67 7.93 -2.39 -0.02 2.65 16 26 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 28 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 31 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -61.99 272.12 4.33 -57.66 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 1.11 Total: 23.90 kcal Atomic # 6 Polarization: -65.85 SS G_CDS: 2.53 Total: -63.32 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.24 Total: -43.31 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -1.58 Total: -15.49 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -61.99 4.33 -57.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713218599.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.676 kcal (2) G-P(sol) polarization free energy of solvation -61.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds