Wall clock time and date at job start Mon Mar 30 2020 02:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48500 * 109.47256 * 269.99905 * 3 2 1 5 5 H 1.48506 * 109.46930 * 29.99746 * 3 2 1 6 6 H 1.48499 * 109.47104 * 149.99608 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 O 1.42903 * 109.47184 * 59.99808 * 9 7 2 12 12 C 1.53000 * 109.47083 * 179.97438 * 9 7 2 13 13 C 1.54337 * 110.82756 * 295.89349 * 12 9 7 14 14 C 1.51670 * 105.02420 * 215.57025 * 13 12 9 15 15 C 1.38503 * 130.31126 * 197.10354 * 14 13 12 16 16 C 1.38098 * 120.21641 * 179.80161 * 15 14 13 17 17 C 1.38260 * 119.93234 * 359.97438 * 16 15 14 18 18 C 1.38097 * 119.93445 * 0.02562 * 17 16 15 19 19 C 1.38216 * 109.83940 * 16.91564 * 14 13 12 20 20 C 1.51367 * 109.75798 * 0.16139 * 19 14 13 21 21 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 22 22 H 0.96700 * 114.00234 * 59.99791 * 11 9 7 23 23 H 1.09003 * 110.73000 * 59.30205 * 12 9 7 24 24 H 1.09005 * 110.30376 * 334.35508 * 13 12 9 25 25 H 1.09001 * 110.30402 * 96.49869 * 13 12 9 26 26 H 1.08000 * 119.88909 * 359.79380 * 15 14 13 27 27 H 1.07996 * 120.03595 * 180.02562 * 16 15 14 28 28 H 1.08006 * 120.02939 * 180.02562 * 17 16 15 29 29 H 1.08004 * 119.88927 * 180.02562 * 18 17 16 30 30 H 1.09003 * 110.30533 * 223.88809 * 20 19 14 31 31 H 1.09005 * 110.30357 * 101.73530 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4299 -2.5751 -1.1665 12 6 2.2453 -3.6620 0.0005 13 6 3.0807 -3.6698 -1.2972 14 6 3.2940 -5.1366 -1.6187 15 6 4.2088 -5.7452 -2.4619 16 6 4.2219 -7.1195 -2.5974 17 6 3.3195 -7.8911 -1.8889 18 6 2.4066 -7.2861 -1.0477 19 6 2.3917 -5.9080 -0.9109 20 6 1.5065 -5.0156 -0.0675 21 1 -0.4850 0.8400 -0.0004 22 1 0.9223 -2.5299 -1.9976 23 1 2.8916 -3.6171 0.8771 24 1 2.5319 -3.1826 -2.1032 25 1 4.0366 -3.1718 -1.1346 26 1 4.9141 -5.1431 -3.0154 27 1 4.9367 -7.5910 -3.2554 28 1 3.3286 -8.9661 -1.9933 29 1 1.7024 -7.8896 -0.4943 30 1 1.3906 -5.4339 0.9324 31 1 0.5329 -4.8916 -0.5417 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535679954.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:41 Heat of formation + Delta-G solvation = -55.856601 kcal Electronic energy + Delta-G solvation = -14356.262772 eV Core-core repulsion = 11986.943266 eV Total energy + Delta-G solvation = -2369.319506 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.06010 -38.30300 -35.45257 -34.20876 -32.25169 -30.75619 -28.30869 -27.90045 -24.87143 -22.60600 -21.74870 -20.77816 -18.91389 -17.32099 -16.80710 -16.66413 -16.41305 -15.78914 -15.32523 -14.88756 -14.12658 -14.05319 -13.78043 -13.59604 -13.32949 -12.97292 -12.81072 -12.58612 -12.10918 -11.98759 -11.83645 -11.77909 -11.58747 -10.91385 -10.65826 -10.11881 -9.65080 -9.32127 -8.11095 -6.35431 0.52532 0.54123 1.41080 1.41787 1.52361 2.40488 2.91941 3.14893 3.59261 3.79028 4.16225 4.20010 4.24897 4.25019 4.38149 4.47943 4.73105 4.83364 4.89856 4.96347 5.03891 5.06039 5.27072 5.31362 5.41618 5.62626 5.65489 5.68684 5.78942 5.89441 6.12688 6.19935 6.75912 7.35205 7.54566 8.93593 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.054794 B = 0.007198 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.881201 B = 3888.811603 C = 4193.649220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.023 3.977 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.575 4.575 8 H 0.061 0.939 9 C 0.237 3.763 10 H 0.022 0.978 11 O -0.576 6.576 12 C -0.104 4.104 13 C -0.061 4.061 14 C -0.111 4.111 15 C -0.121 4.121 16 C -0.125 4.125 17 C -0.124 4.124 18 C -0.121 4.121 19 C -0.109 4.109 20 C -0.075 4.075 21 H 0.260 0.740 22 H 0.352 0.648 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.131 0.869 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.132 0.868 30 H 0.072 0.928 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.014 -12.609 -4.112 15.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.782 3.218 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.613 4.613 8 H 0.079 0.921 9 C 0.179 3.821 10 H 0.040 0.960 11 O -0.382 6.382 12 C -0.123 4.123 13 C -0.098 4.098 14 C -0.111 4.111 15 C -0.139 4.139 16 C -0.142 4.142 17 C -0.142 4.142 18 C -0.139 4.139 19 C -0.109 4.109 20 C -0.112 4.112 21 H 0.069 0.931 22 H 0.198 0.802 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.149 0.851 27 H 0.169 0.831 28 H 0.169 0.831 29 H 0.150 0.850 30 H 0.091 0.909 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.380 -12.552 -3.643 15.010 hybrid contribution 0.465 1.275 -0.128 1.363 sum 7.846 -11.277 -3.771 14.246 Atomic orbital electron populations 1.70215 1.07649 1.27238 1.48923 1.25905 0.95442 1.02857 0.93638 0.85602 0.78757 0.79092 0.78380 1.19882 1.21093 1.18938 1.22016 0.93524 0.92391 1.53383 0.92077 1.19143 0.87604 0.90740 0.84573 0.95990 1.86512 1.39225 1.96350 1.16091 1.22431 0.97305 0.94918 0.97681 1.20902 0.99799 0.91823 0.97313 1.20955 0.96648 0.95945 0.97573 1.20916 0.98640 0.95676 0.98638 1.21368 0.99756 0.92948 1.00159 1.21370 0.95292 1.01095 0.96453 1.20909 1.00186 0.92717 1.00104 1.20819 0.97221 0.94333 0.98488 1.21039 0.98101 0.93239 0.98853 0.93096 0.80167 0.91346 0.91065 0.91288 0.85067 0.83115 0.83077 0.84993 0.90921 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.25 12.84 21.45 0.28 -53.98 16 2 C 0.02 1.31 5.40 84.65 0.46 1.77 16 3 Si 0.96 43.39 29.54 68.60 2.03 45.42 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.58 -31.30 8.29 25.60 0.21 -31.08 16 8 H 0.06 3.20 7.62 -2.91 -0.02 3.18 16 9 C 0.24 12.11 2.70 29.85 0.08 12.19 16 10 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 11 O -0.58 -30.09 11.76 -148.98 -1.75 -31.84 16 12 C -0.10 -4.31 2.93 -9.88 -0.03 -4.34 16 13 C -0.06 -2.28 5.65 30.61 0.17 -2.11 16 14 C -0.11 -3.66 6.15 -19.50 -0.12 -3.78 16 15 C -0.12 -3.27 10.04 22.30 0.22 -3.04 16 16 C -0.12 -2.77 10.05 22.24 0.22 -2.55 16 17 C -0.12 -2.75 10.05 22.24 0.22 -2.53 16 18 C -0.12 -3.25 10.04 22.30 0.22 -3.02 16 19 C -0.11 -3.57 6.14 -19.60 -0.12 -3.69 16 20 C -0.08 -2.77 6.24 30.52 0.19 -2.58 16 21 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 22 H 0.35 16.58 6.90 -74.06 -0.51 16.07 16 23 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 24 H 0.07 2.75 5.91 -2.38 -0.01 2.73 16 25 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 27 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 28 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.13 2.99 8.06 -2.91 -0.02 2.96 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.07 2.86 7.19 -2.38 -0.02 2.85 16 Total: -1.00 -63.96 259.85 2.90 -61.05 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.61 Total: 24.11 kcal Atomic # 6 Polarization: -46.50 SS G_CDS: 1.74 Total: -44.76 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.28 Total: -53.98 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -1.75 Total: -31.84 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -63.96 2.90 -61.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535679954.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.197 kcal (2) G-P(sol) polarization free energy of solvation -63.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds