Wall clock time and date at job start Mon Mar 30 2020 02:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00014 * 2 1 4 4 H 1.48504 * 109.47179 * 269.99982 * 3 2 1 5 5 H 1.48504 * 109.47177 * 30.00022 * 3 2 1 6 6 H 1.48496 * 109.47184 * 149.99892 * 3 2 1 7 7 C 1.37881 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00034 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99698 * 179.97438 * 7 2 1 10 10 H 1.08997 * 109.46760 * 60.00833 * 9 7 2 11 11 O 1.42895 * 109.47567 * 300.00006 * 9 7 2 12 12 C 1.53000 * 109.46623 * 179.97438 * 9 7 2 13 13 C 1.54338 * 110.99650 * 293.07332 * 12 9 7 14 14 C 1.51373 * 105.17654 * 268.02558 * 13 12 9 15 15 C 1.38497 * 130.39135 * 162.82621 * 14 13 12 16 16 C 1.38105 * 120.21201 * 179.97438 * 15 14 13 17 17 C 1.38254 * 119.93674 * 0.02562 * 16 15 14 18 18 C 1.38101 * 119.93152 * 0.02562 * 17 16 15 19 19 C 1.38217 * 109.75622 * 342.83782 * 14 13 12 20 20 C 1.51371 * 109.76060 * 359.97438 * 19 14 13 21 21 H 0.97000 * 120.00130 * 0.02562 * 1 2 3 22 22 H 0.96702 * 114.00109 * 300.00778 * 11 9 7 23 23 H 1.09001 * 110.72715 * 56.60203 * 12 9 7 24 24 H 1.09003 * 110.30603 * 26.96432 * 13 12 9 25 25 H 1.09004 * 110.30664 * 149.11794 * 13 12 9 26 26 H 1.08000 * 119.88977 * 0.26400 * 15 14 13 27 27 H 1.08005 * 120.02813 * 180.02562 * 16 15 14 28 28 H 1.07994 * 120.03201 * 179.97438 * 17 16 15 29 29 H 1.08002 * 119.88479 * 180.02562 * 18 17 16 30 30 H 1.08994 * 110.30585 * 136.12652 * 20 19 14 31 31 H 1.09005 * 110.30134 * 258.27858 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8751 -0.6797 0.8895 11 8 3.9875 -0.5211 -1.1674 12 6 4.0215 -2.6365 0.0014 13 6 3.6739 -3.3446 1.3279 14 6 4.8737 -3.1200 2.2232 15 6 5.0044 -3.2437 3.5964 16 6 6.2163 -2.9831 4.2054 17 6 7.3028 -2.5970 3.4427 18 6 7.1740 -2.4721 2.0734 19 6 5.9598 -2.7337 1.4607 20 6 5.5646 -2.6729 0.0008 21 1 -0.4850 0.8400 -0.0004 22 1 3.7018 -0.9251 -1.9982 23 1 3.6207 -3.1882 -0.8490 24 1 2.7825 -2.9008 1.7714 25 1 3.5226 -4.4108 1.1592 26 1 4.1572 -3.5495 4.1924 27 1 6.3150 -3.0809 5.2765 28 1 8.2510 -2.3924 3.9173 29 1 8.0234 -2.1708 1.4782 30 1 5.9640 -1.7705 -0.4619 31 1 5.9218 -3.5584 -0.5250 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535679956.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:44 Heat of formation + Delta-G solvation = -36.976620 kcal Electronic energy + Delta-G solvation = -14517.110135 eV Core-core repulsion = 12148.609327 eV Total energy + Delta-G solvation = -2368.500808 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.81341 -36.74200 -34.31005 -32.27240 -31.05956 -29.24217 -27.05307 -26.35203 -22.81634 -21.43465 -20.53464 -19.42875 -17.20397 -16.04194 -15.24199 -14.96070 -14.78944 -14.54189 -13.66253 -13.14716 -12.93051 -12.79646 -12.56718 -12.32076 -11.77994 -11.24256 -11.13893 -10.82214 -10.74004 -10.58262 -10.39388 -10.26308 -9.70727 -9.12310 -8.64705 -8.49601 -8.47338 -8.06425 -6.12567 -4.23252 1.68840 1.70064 3.45879 3.48755 3.62886 4.07592 4.51324 4.83910 5.09109 5.17576 5.23420 5.31804 5.55859 5.64235 5.70175 5.83132 5.95631 6.03403 6.16894 6.29550 6.38875 6.47117 6.57563 6.69485 6.75894 6.81396 6.87063 7.09352 7.33431 7.43704 7.60557 8.29003 8.82806 9.00844 9.52011 10.97707 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.035569 B = 0.009003 C = 0.008871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.008219 B = 3109.321577 C = 3155.603631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.081 3.919 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.306 1.306 6 H -0.268 1.268 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.199 3.801 10 H 0.060 0.940 11 O -0.587 6.587 12 C -0.100 4.100 13 C -0.076 4.076 14 C -0.083 4.083 15 C -0.112 4.112 16 C -0.128 4.128 17 C -0.131 4.131 18 C -0.113 4.113 19 C -0.090 4.090 20 C -0.083 4.083 21 H 0.265 0.735 22 H 0.361 0.639 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.069 0.931 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.651 -6.102 3.840 13.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.123 4.123 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.234 1.234 6 H -0.193 1.193 7 C -0.595 4.595 8 H 0.094 0.906 9 C 0.142 3.858 10 H 0.077 0.923 11 O -0.393 6.393 12 C -0.118 4.118 13 C -0.113 4.113 14 C -0.083 4.083 15 C -0.130 4.130 16 C -0.146 4.146 17 C -0.149 4.149 18 C -0.131 4.131 19 C -0.090 4.090 20 C -0.120 4.120 21 H 0.074 0.926 22 H 0.207 0.793 23 H 0.095 0.905 24 H 0.112 0.888 25 H 0.088 0.912 26 H 0.135 0.865 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.100 0.900 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.771 -5.621 4.293 13.733 hybrid contribution 0.073 0.485 -0.257 0.554 sum 11.845 -5.136 4.036 13.526 Atomic orbital electron populations 1.69957 1.06613 1.27407 1.49110 1.25032 0.94662 0.99940 0.92703 0.86282 0.79299 0.81832 0.78476 1.20471 1.23415 1.19328 1.21560 0.89836 0.94756 1.53301 0.90635 1.19899 0.93673 0.86979 0.85264 0.92270 1.86382 1.77574 1.58455 1.16852 1.22442 0.92660 0.99722 0.97013 1.21097 0.96308 0.99835 0.94090 1.20862 0.96521 0.97494 0.93467 1.20652 0.97532 1.01145 0.93662 1.20942 0.93132 1.01195 0.99319 1.20917 0.98568 1.01632 0.93756 1.20598 0.96721 1.01269 0.94540 1.20784 0.93396 0.98130 0.96739 1.21203 0.97225 1.01960 0.91611 0.92589 0.79297 0.90520 0.88787 0.91217 0.86452 0.86449 0.86517 0.86755 0.90014 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.08 13.96 55.43 0.77 -26.30 16 2 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 3 Si 0.91 23.53 26.18 -169.99 -4.45 19.08 16 4 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 5 H -0.31 -7.86 7.11 56.52 0.40 -7.45 16 6 H -0.27 -6.98 6.54 56.52 0.37 -6.61 16 7 C -0.56 -15.17 8.40 -34.44 -0.29 -15.46 16 8 H 0.08 2.18 7.90 -52.49 -0.41 1.77 16 9 C 0.20 4.64 1.87 -27.88 -0.05 4.58 16 10 H 0.06 1.52 7.20 -51.93 -0.37 1.14 16 11 O -0.59 -13.21 10.24 -35.23 -0.36 -13.57 16 12 C -0.10 -1.91 2.74 -89.21 -0.24 -2.15 16 13 C -0.08 -1.40 6.16 -26.85 -0.17 -1.56 16 14 C -0.08 -1.47 6.14 -104.20 -0.64 -2.11 16 15 C -0.11 -1.76 10.04 -39.53 -0.40 -2.16 16 16 C -0.13 -1.79 10.05 -39.62 -0.40 -2.19 16 17 C -0.13 -1.81 10.05 -39.63 -0.40 -2.21 16 18 C -0.11 -1.72 10.04 -39.54 -0.40 -2.12 16 19 C -0.09 -1.56 6.14 -104.21 -0.64 -2.20 16 20 C -0.08 -1.40 6.24 -26.85 -0.17 -1.57 16 21 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 22 H 0.36 7.01 9.04 45.56 0.41 7.43 16 23 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 24 H 0.09 1.92 7.14 -51.93 -0.37 1.55 16 25 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 27 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 28 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.08 1.43 7.30 -51.93 -0.38 1.05 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 258.01 15.07 3.89 3.89 Total: -1.00 -30.85 258.01 -7.29 -38.14 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -3.25 Total: 5.67 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -3.89 Total: -26.91 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.77 Total: -26.30 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.36 Total: -13.57 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.45 Total: 19.08 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.85 -7.29 -38.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535679956.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.162 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds