Wall clock time and date at job start Mon Mar 30 2020 02:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00324 * 2 1 4 4 H 1.48499 * 109.47466 * 269.99697 * 3 2 1 5 5 H 1.48499 * 109.47139 * 29.99886 * 3 2 1 6 6 H 1.48508 * 109.47282 * 149.99710 * 3 2 1 7 7 C 1.37883 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99651 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00226 * 180.02562 * 7 2 1 10 10 H 1.09003 * 109.47328 * 300.00498 * 9 7 2 11 11 O 1.42909 * 109.47328 * 59.99858 * 9 7 2 12 12 C 1.52998 * 109.47530 * 179.97438 * 9 7 2 13 13 H 1.09006 * 110.26408 * 57.92348 * 12 9 7 14 14 C 1.54339 * 110.30837 * 179.97438 * 12 9 7 15 15 C 1.54347 * 102.39272 * 145.27326 * 14 12 9 16 16 C 1.51370 * 105.25432 * 333.60607 * 15 14 12 17 17 C 1.38309 * 130.55124 * 197.14857 * 16 15 14 18 18 C 1.38105 * 120.28108 * 180.02562 * 17 16 15 19 19 C 1.38256 * 119.93490 * 0.03279 * 18 17 16 20 20 C 1.38107 * 119.93596 * 359.97438 * 19 18 17 21 21 C 1.38451 * 109.62635 * 17.23355 * 16 15 14 22 22 H 0.97008 * 119.99611 * 0.02562 * 1 2 3 23 23 H 0.96705 * 113.99573 * 59.99811 * 11 9 7 24 24 H 1.09008 * 110.81794 * 27.04976 * 14 12 9 25 25 H 1.08994 * 110.99940 * 263.57744 * 14 12 9 26 26 H 1.09002 * 110.30226 * 92.58047 * 15 14 12 27 27 H 1.08997 * 110.30441 * 214.63608 * 15 14 12 28 28 H 1.07991 * 119.82817 * 0.06382 * 17 16 15 29 29 H 1.07992 * 120.03227 * 180.02562 * 18 17 16 30 30 H 1.07997 * 120.03500 * 179.97438 * 19 18 17 31 31 H 1.07997 * 119.89316 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5114 -1.1942 0.0011 10 1 3.8752 -0.6805 -0.8888 11 8 3.9874 -0.5203 1.1680 12 6 4.0214 -2.6367 0.0023 13 1 3.6356 -3.1742 -0.8640 14 6 5.5646 -2.6592 0.0022 15 6 5.8778 -3.9022 0.8620 16 6 4.6831 -4.0646 1.7773 17 6 4.5380 -4.7893 2.9463 18 6 3.3330 -4.7884 3.6212 19 6 2.2661 -4.0610 3.1271 20 6 2.4076 -3.3363 1.9600 21 6 3.6150 -3.3365 1.2814 22 1 -0.4850 0.8401 -0.0004 23 1 3.7017 -0.9236 1.9991 24 1 5.9653 -1.7571 0.4649 25 1 5.9535 -2.7795 -1.0088 26 1 5.9911 -4.7817 0.2282 27 1 6.7829 -3.7392 1.4470 28 1 5.3709 -5.3577 3.3329 29 1 3.2243 -5.3554 4.5338 30 1 1.3230 -4.0594 3.6533 31 1 1.5736 -2.7687 1.5745 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535692149.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:09 Heat of formation + Delta-G solvation = -46.661524 kcal Electronic energy + Delta-G solvation = -14836.311271 eV Core-core repulsion = 12467.390494 eV Total energy + Delta-G solvation = -2368.920777 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.16516 -37.97960 -35.89852 -34.37679 -32.34584 -30.13446 -29.59558 -27.43251 -23.57733 -23.39884 -21.76807 -20.91280 -18.99366 -17.39982 -16.96274 -16.71596 -15.93761 -15.87057 -15.31448 -15.04360 -14.60884 -13.98258 -13.77155 -13.46004 -13.41227 -12.96855 -12.91574 -12.51777 -12.17963 -11.89072 -11.75936 -11.62322 -11.47573 -10.78952 -10.73364 -10.12610 -9.55193 -9.25445 -8.29767 -6.40318 0.57973 0.65385 1.38364 1.44492 1.74143 2.45592 2.99679 3.07376 3.67080 3.79721 4.00354 4.24250 4.29348 4.32211 4.42852 4.57221 4.76019 4.81557 4.85778 4.97952 5.10372 5.16117 5.27370 5.32836 5.49760 5.54594 5.60851 5.70763 5.82037 6.00863 6.16732 6.29722 6.69075 7.13188 7.37470 8.83225 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.034260 B = 0.011227 C = 0.009382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.084087 B = 2493.406119 C = 2983.819225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.027 3.973 3 Si 0.929 3.071 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.208 1.208 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.203 3.797 10 H 0.054 0.946 11 O -0.578 6.578 12 C -0.073 4.073 13 H 0.070 0.930 14 C -0.112 4.112 15 C -0.070 4.070 16 C -0.112 4.112 17 C -0.118 4.118 18 C -0.123 4.123 19 C -0.139 4.139 20 C -0.124 4.124 21 C -0.090 4.090 22 H 0.263 0.737 23 H 0.359 0.641 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.145 0.855 29 H 0.149 0.851 30 H 0.126 0.874 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.735 -8.467 4.936 15.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.172 4.172 3 Si 0.755 3.245 4 H -0.213 1.213 5 H -0.229 1.229 6 H -0.130 1.130 7 C -0.585 4.585 8 H 0.068 0.932 9 C 0.145 3.855 10 H 0.072 0.928 11 O -0.384 6.384 12 C -0.092 4.092 13 H 0.089 0.911 14 C -0.150 4.150 15 C -0.107 4.107 16 C -0.112 4.112 17 C -0.135 4.135 18 C -0.141 4.141 19 C -0.157 4.157 20 C -0.142 4.142 21 C -0.090 4.090 22 H 0.072 0.928 23 H 0.206 0.794 24 H 0.090 0.910 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.163 0.837 29 H 0.167 0.833 30 H 0.144 0.856 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.890 -7.992 4.485 15.012 hybrid contribution -1.115 0.625 0.072 1.280 sum 10.775 -7.367 4.557 13.825 Atomic orbital electron populations 1.70080 1.08275 1.27969 1.51662 1.25787 0.95179 1.03197 0.93034 0.86122 0.82044 0.78183 0.78176 1.21261 1.22926 1.12966 1.21892 0.92120 0.93275 1.51213 0.93217 1.19618 0.91271 0.89216 0.85396 0.92792 1.86561 1.77606 1.57651 1.16595 1.21280 0.96384 0.96514 0.94982 0.91148 1.22343 0.93160 0.98531 1.00926 1.21012 0.95319 0.98304 0.96045 1.21009 0.96486 0.97481 0.96229 1.20813 0.98453 0.99850 0.94410 1.21298 0.92587 0.99556 1.00654 1.21278 0.99991 0.98195 0.96252 1.21348 0.98039 0.98883 0.95895 1.20588 0.93840 0.97969 0.96593 0.92796 0.79434 0.91044 0.89476 0.89211 0.89199 0.83744 0.83342 0.85599 0.87221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.31 13.96 21.45 0.30 -58.02 16 2 C 0.03 1.56 5.47 84.66 0.46 2.02 16 3 Si 0.93 45.57 26.99 68.60 1.85 47.43 16 4 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 5 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 6 H -0.21 -9.76 5.31 99.48 0.53 -9.23 16 7 C -0.55 -30.11 7.50 25.60 0.19 -29.92 16 8 H 0.05 3.00 6.15 -2.91 -0.02 2.98 16 9 C 0.20 9.29 2.12 29.85 0.06 9.35 16 10 H 0.05 2.51 7.57 -2.39 -0.02 2.49 16 11 O -0.58 -25.99 9.27 -148.98 -1.38 -27.37 16 12 C -0.07 -2.82 2.74 -10.87 -0.03 -2.85 16 13 H 0.07 2.82 8.14 -2.38 -0.02 2.80 16 14 C -0.11 -3.36 6.51 31.51 0.21 -3.15 16 15 C -0.07 -1.78 6.76 30.52 0.21 -1.57 16 16 C -0.11 -3.47 6.15 -19.58 -0.12 -3.59 16 17 C -0.12 -3.13 10.03 22.25 0.22 -2.91 16 18 C -0.12 -3.34 10.05 22.24 0.22 -3.12 16 19 C -0.14 -4.65 10.05 22.24 0.22 -4.42 16 20 C -0.12 -5.04 8.77 22.30 0.20 -4.85 16 21 C -0.09 -3.41 4.58 -19.54 -0.09 -3.50 16 22 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 23 H 0.36 15.68 7.70 -74.05 -0.57 15.11 16 24 H 0.07 2.26 7.30 -2.38 -0.02 2.24 16 25 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.14 2.84 8.06 -2.92 -0.02 2.82 16 29 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 30 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16 31 H 0.11 5.39 5.14 -2.91 -0.01 5.38 16 Total: -1.00 -64.68 249.36 2.91 -61.77 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.38 Total: 24.71 kcal Atomic # 6 Polarization: -50.27 SS G_CDS: 1.76 Total: -48.52 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.30 Total: -58.02 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -1.38 Total: -27.37 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.85 Total: 47.43 kcal Total: -64.68 2.91 -61.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535692149.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.107 kcal (2) G-P(sol) polarization free energy of solvation -64.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds