Wall clock time and date at job start Mon Mar 30 2020 02:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86794 * 120.00254 * 2 1 4 4 H 1.48501 * 109.46962 * 269.99698 * 3 2 1 5 5 H 1.48494 * 109.47272 * 29.99922 * 3 2 1 6 6 H 1.48503 * 109.47073 * 150.00285 * 3 2 1 7 7 C 1.37885 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00147 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99894 * 180.02562 * 7 2 1 10 10 H 1.09007 * 109.46957 * 299.99498 * 9 7 2 11 11 O 1.42897 * 109.47581 * 59.99707 * 9 7 2 12 12 C 1.53004 * 109.47027 * 180.02562 * 9 7 2 13 13 H 1.09002 * 110.26737 * 300.69764 * 12 9 7 14 14 C 1.54348 * 110.38627 * 178.56499 * 12 9 7 15 15 C 1.54336 * 102.39430 * 267.38054 * 14 12 9 16 16 C 1.51369 * 105.17193 * 333.65344 * 15 14 12 17 17 C 1.38504 * 130.39255 * 197.19074 * 16 15 14 18 18 C 1.38098 * 120.21368 * 179.97438 * 17 16 15 19 19 C 1.38258 * 119.93691 * 0.02562 * 18 17 16 20 20 C 1.38104 * 119.93086 * 0.02562 * 19 18 17 21 21 C 1.38216 * 109.75642 * 17.18461 * 16 15 14 22 22 H 0.97005 * 120.00197 * 359.97438 * 1 2 3 23 23 H 0.96701 * 113.99447 * 59.99909 * 11 9 7 24 24 H 1.09002 * 110.81840 * 25.60639 * 14 12 9 25 25 H 1.09001 * 110.82099 * 149.15356 * 14 12 9 26 26 H 1.09003 * 110.30439 * 214.72673 * 15 14 12 27 27 H 1.09005 * 110.30711 * 92.57501 * 15 14 12 28 28 H 1.07997 * 119.88672 * 359.97438 * 17 16 15 29 29 H 1.08004 * 120.03067 * 179.97438 * 18 17 16 30 30 H 1.07994 * 120.03325 * 180.02562 * 19 18 17 31 31 H 1.08003 * 119.88709 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1295 0.0014 9 6 3.5114 -1.1942 0.0011 10 1 3.8751 -0.6806 -0.8890 11 8 3.9874 -0.5203 1.1678 12 6 4.0213 -2.6368 0.0010 13 1 3.6547 -3.1669 0.8800 14 6 5.5642 -2.6616 -0.0346 15 6 5.8593 -2.7481 -1.5471 16 6 4.6405 -3.4121 -2.1511 17 6 4.4691 -4.0240 -3.3818 18 6 3.2473 -4.5703 -3.7222 19 6 2.1910 -4.5063 -2.8325 20 6 2.3597 -3.8956 -1.6053 21 6 3.5845 -3.3482 -1.2616 22 1 -0.4851 0.8401 0.0004 23 1 3.7017 -0.9236 1.9990 24 1 5.9763 -1.7457 0.3888 25 1 5.9497 -3.5382 0.4861 26 1 6.7475 -3.3542 -1.7251 27 1 5.9918 -1.7498 -1.9643 28 1 5.2937 -4.0740 -4.0774 29 1 3.1169 -5.0464 -4.6828 30 1 1.2350 -4.9333 -3.0969 31 1 1.5341 -3.8464 -0.9107 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535692154.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:14 Heat of formation + Delta-G solvation = -51.271700 kcal Electronic energy + Delta-G solvation = -14719.217357 eV Core-core repulsion = 12350.096668 eV Total energy + Delta-G solvation = -2369.120689 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.12998 -38.12228 -35.88818 -34.39362 -32.41628 -29.89814 -29.67754 -27.44980 -23.85229 -23.31882 -21.69195 -21.07880 -19.08242 -17.31691 -16.87973 -16.82398 -15.97368 -15.87671 -15.42842 -14.98384 -14.68556 -14.03195 -13.72356 -13.69099 -13.41106 -13.03597 -12.74453 -12.44389 -12.28129 -11.95563 -11.76555 -11.56715 -11.53215 -10.95285 -10.77037 -10.24523 -9.57074 -9.23130 -8.30906 -6.42119 0.56366 0.61691 1.37507 1.42807 1.71887 2.44203 2.95498 3.07350 3.62074 3.74503 4.04416 4.20883 4.25964 4.29123 4.40029 4.52632 4.71496 4.76398 4.83339 4.87707 5.02424 5.17870 5.27995 5.33074 5.37917 5.55274 5.58122 5.66763 5.75055 5.94461 6.17502 6.25162 6.70590 7.20398 7.38333 8.82953 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.029938 B = 0.011513 C = 0.009489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.049571 B = 2431.498947 C = 2949.925037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.026 3.974 3 Si 0.929 3.071 4 H -0.292 1.292 5 H -0.299 1.299 6 H -0.201 1.201 7 C -0.551 4.551 8 H 0.047 0.953 9 C 0.215 3.785 10 H 0.042 0.958 11 O -0.580 6.580 12 C -0.070 4.070 13 H 0.064 0.936 14 C -0.109 4.109 15 C -0.075 4.075 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.126 4.126 19 C -0.137 4.137 20 C -0.114 4.114 21 C -0.087 4.087 22 H 0.263 0.737 23 H 0.370 0.630 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.146 0.854 29 H 0.151 0.849 30 H 0.133 0.867 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.725 -7.467 -4.178 14.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.173 4.173 3 Si 0.754 3.246 4 H -0.219 1.219 5 H -0.226 1.226 6 H -0.123 1.123 7 C -0.588 4.588 8 H 0.065 0.935 9 C 0.158 3.842 10 H 0.059 0.941 11 O -0.388 6.388 12 C -0.089 4.089 13 H 0.082 0.918 14 C -0.146 4.146 15 C -0.112 4.112 16 C -0.117 4.117 17 C -0.135 4.135 18 C -0.144 4.144 19 C -0.155 4.155 20 C -0.133 4.133 21 C -0.087 4.087 22 H 0.072 0.928 23 H 0.218 0.782 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.117 0.883 27 H 0.093 0.907 28 H 0.164 0.836 29 H 0.169 0.831 30 H 0.150 0.850 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.879 -6.992 -4.606 14.533 hybrid contribution -1.170 0.500 0.437 1.346 sum 10.709 -6.492 -4.169 13.199 Atomic orbital electron populations 1.70083 1.08355 1.27970 1.51763 1.25813 0.95207 1.03295 0.92999 0.86147 0.82326 0.78132 0.78025 1.21867 1.22569 1.12305 1.21934 0.92247 0.93451 1.51210 0.93462 1.19414 0.91053 0.88526 0.85231 0.94067 1.86585 1.77518 1.57743 1.16906 1.21261 0.96335 0.96219 0.95051 0.91759 1.22320 0.93183 1.03021 0.96111 1.21056 0.95312 1.00176 0.94659 1.21007 0.96689 0.99052 0.94938 1.20908 0.98489 0.98629 0.95513 1.21310 0.92546 1.00486 1.00072 1.21262 1.00108 1.00450 0.93683 1.20817 0.96296 0.98432 0.97725 1.20560 0.93887 0.96944 0.97291 0.92803 0.78217 0.89855 0.89883 0.88348 0.90712 0.83633 0.83085 0.84952 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.22 13.96 21.45 0.30 -58.92 16 2 C 0.03 1.50 5.47 84.66 0.46 1.96 16 3 Si 0.93 45.79 26.99 68.60 1.85 47.65 16 4 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 5 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 6 H -0.20 -9.31 5.31 99.48 0.53 -8.78 16 7 C -0.55 -30.79 8.65 25.60 0.22 -30.57 16 8 H 0.05 2.88 5.97 -2.91 -0.02 2.86 16 9 C 0.22 9.90 1.86 29.85 0.06 9.95 16 10 H 0.04 2.02 7.57 -2.38 -0.02 2.00 16 11 O -0.58 -24.71 9.41 -148.98 -1.40 -26.11 16 12 C -0.07 -2.71 2.60 -10.87 -0.03 -2.74 16 13 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 14 C -0.11 -3.27 6.52 31.50 0.21 -3.06 16 15 C -0.08 -2.10 6.76 30.51 0.21 -1.90 16 16 C -0.12 -3.88 6.14 -19.59 -0.12 -4.00 16 17 C -0.12 -3.36 10.04 22.30 0.22 -3.14 16 18 C -0.13 -3.59 10.05 22.24 0.22 -3.37 16 19 C -0.14 -4.63 10.05 22.24 0.22 -4.41 16 20 C -0.11 -4.68 9.15 22.30 0.20 -4.48 16 21 C -0.09 -3.42 5.10 -19.60 -0.10 -3.52 16 22 H 0.26 15.68 8.31 -92.70 -0.77 14.90 16 23 H 0.37 13.81 9.04 -74.06 -0.67 13.14 16 24 H 0.08 2.49 7.35 -2.39 -0.02 2.47 16 25 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 29 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 30 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 31 H 0.09 4.27 6.77 -2.91 -0.02 4.25 16 Total: -1.00 -67.51 254.02 2.81 -64.70 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.28 Total: 21.95 kcal Atomic # 6 Polarization: -51.04 SS G_CDS: 1.78 Total: -49.26 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: 0.30 Total: -58.92 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -1.40 Total: -26.11 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.85 Total: 47.65 kcal Total: -67.51 2.81 -64.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535692154.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.429 kcal (2) G-P(sol) polarization free energy of solvation -67.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds