Wall clock time and date at job start Mon Mar 30 2020 02:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86802 * 119.99434 * 2 1 4 4 H 1.48510 * 109.46669 * 269.99288 * 3 2 1 5 5 H 1.48494 * 109.47602 * 29.99651 * 3 2 1 6 6 H 1.48504 * 109.47176 * 150.00017 * 3 2 1 7 7 C 1.37869 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00173 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99963 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.47165 * 299.99834 * 9 7 2 11 11 O 1.42891 * 109.47297 * 60.00447 * 9 7 2 12 12 C 1.50708 * 109.46873 * 180.02562 * 9 7 2 13 13 C 1.38143 * 119.89025 * 265.02065 * 12 9 7 14 14 C 1.38216 * 119.93529 * 179.97438 * 13 12 9 15 15 C 1.38150 * 119.93066 * 359.97438 * 14 13 12 16 16 C 1.38449 * 120.21812 * 0.02562 * 15 14 13 17 17 C 1.38266 * 119.84778 * 0.02562 * 16 15 14 18 18 C 1.51375 * 109.74725 * 179.97438 * 17 16 15 19 19 C 1.54339 * 105.17535 * 342.80931 * 18 17 16 20 20 C 1.51674 * 130.32193 * 179.79840 * 16 15 14 21 21 H 0.96991 * 119.99981 * 0.02562 * 1 2 3 22 22 H 0.96708 * 114.00336 * 59.99725 * 11 9 7 23 23 H 1.08000 * 120.03478 * 0.02562 * 13 12 9 24 24 H 1.07995 * 120.03584 * 180.02562 * 14 13 12 25 25 H 1.08004 * 119.88914 * 180.02562 * 15 14 13 26 26 H 1.08997 * 110.29993 * 223.88203 * 18 17 16 27 27 H 1.09004 * 110.30295 * 101.73884 * 18 17 16 28 28 H 1.09002 * 110.82153 * 144.58253 * 19 18 17 29 29 H 1.09002 * 110.82354 * 267.93009 * 19 18 17 30 30 H 1.09005 * 110.25422 * 78.28582 * 20 16 15 31 31 H 1.09003 * 110.49278 * 316.04515 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8753 -0.6802 -0.8889 11 8 3.9875 -0.5201 1.1679 12 6 4.0140 -2.6147 0.0010 13 6 4.3411 -3.2294 1.1941 14 6 4.8014 -4.5327 1.1952 15 6 4.9330 -5.2181 0.0030 16 6 4.6057 -4.6038 -1.1938 17 6 4.1463 -3.2997 -1.1949 18 6 3.8603 -2.8593 -2.6146 19 6 4.6036 -3.8734 -3.5097 20 6 4.6643 -5.1298 -2.6152 21 1 -0.4850 0.8400 -0.0004 22 1 3.7019 -0.9235 1.9991 23 1 4.2364 -2.6924 2.1253 24 1 5.0571 -5.0149 2.1270 25 1 5.2924 -6.2366 0.0046 26 1 4.2445 -1.8533 -2.7831 27 1 2.7890 -2.8939 -2.8128 28 1 4.0390 -4.0731 -4.4204 29 1 5.6063 -3.5183 -3.7475 30 1 3.8101 -5.7774 -2.8134 31 1 5.5962 -5.6694 -2.7844 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535696353.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:08 Heat of formation + Delta-G solvation = -33.678521 kcal Electronic energy + Delta-G solvation = -14566.301309 eV Core-core repulsion = 12197.943517 eV Total energy + Delta-G solvation = -2368.357792 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.68666 -36.37979 -34.79914 -32.29056 -31.15064 -28.55619 -27.30040 -26.55010 -23.03351 -21.30575 -20.38744 -19.40871 -17.39672 -16.00142 -15.44284 -14.96627 -14.61673 -14.48318 -13.65355 -13.25118 -12.82627 -12.54028 -12.42580 -12.17798 -11.77243 -11.39747 -11.12751 -10.89415 -10.80506 -10.66587 -10.57145 -10.43243 -9.89026 -9.16383 -8.68740 -8.47391 -7.96768 -7.78657 -6.14502 -4.25954 1.93622 2.01999 3.36543 3.46391 3.72196 4.33627 4.50854 4.82416 4.97145 5.18021 5.27336 5.46464 5.51906 5.62089 5.74938 5.80611 5.93509 6.06080 6.08846 6.10903 6.24004 6.34304 6.52681 6.62652 6.74073 6.89306 7.02432 7.14617 7.50140 7.51229 7.61369 8.27806 8.79767 8.97358 9.48569 10.95722 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.033100 B = 0.010189 C = 0.008894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.719406 B = 2747.412120 C = 3147.442763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.085 3.915 3 Si 0.867 3.133 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.217 1.217 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.224 3.776 10 H 0.066 0.934 11 O -0.578 6.578 12 C -0.052 4.052 13 C -0.119 4.119 14 C -0.124 4.124 15 C -0.130 4.130 16 C -0.107 4.107 17 C -0.088 4.088 18 C -0.079 4.079 19 C -0.121 4.121 20 C -0.077 4.077 21 H 0.265 0.735 22 H 0.356 0.644 23 H 0.120 0.880 24 H 0.115 0.885 25 H 0.109 0.891 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.483 -7.719 -2.693 12.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.120 4.120 3 Si 0.693 3.307 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.140 1.140 7 C -0.589 4.589 8 H 0.091 0.909 9 C 0.167 3.833 10 H 0.083 0.917 11 O -0.385 6.385 12 C -0.052 4.052 13 C -0.137 4.137 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.107 4.107 17 C -0.088 4.088 18 C -0.116 4.116 19 C -0.159 4.159 20 C -0.114 4.114 21 H 0.075 0.925 22 H 0.204 0.796 23 H 0.138 0.862 24 H 0.133 0.867 25 H 0.127 0.873 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.607 -7.232 -3.141 12.429 hybrid contribution -0.191 0.381 0.430 0.605 sum 9.417 -6.852 -2.711 11.957 Atomic orbital electron populations 1.69948 1.06693 1.27468 1.48579 1.24989 0.94624 0.99775 0.92591 0.87085 0.83102 0.81980 0.78521 1.21251 1.22079 1.13978 1.21331 0.88737 0.94851 1.53965 0.90869 1.18844 0.94013 0.84541 0.85893 0.91691 1.86711 1.77944 1.57348 1.16493 1.20494 0.94442 0.98690 0.91590 1.20775 1.00431 0.94766 0.97735 1.20878 1.01196 0.94969 0.97162 1.20372 1.03528 0.99294 0.91641 1.20567 1.00460 0.95166 0.94525 1.20261 0.99385 0.94387 0.94747 1.20979 1.01294 0.98905 0.90418 1.22302 1.00560 0.95229 0.97774 1.21032 1.01556 0.97746 0.91036 0.92509 0.79628 0.86226 0.86733 0.87320 0.90973 0.89699 0.91014 0.91473 0.90760 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.96 55.43 0.77 -26.22 16 2 C 0.08 2.43 5.47 -17.82 -0.10 2.33 16 3 Si 0.87 21.61 26.99 -169.99 -4.59 17.02 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.22 -5.31 5.31 56.52 0.30 -5.01 16 7 C -0.55 -15.33 9.33 -34.44 -0.32 -15.65 16 8 H 0.07 2.25 7.98 -52.48 -0.42 1.83 16 9 C 0.22 5.35 2.37 -29.03 -0.07 5.29 16 10 H 0.07 1.59 6.91 -51.93 -0.36 1.23 16 11 O -0.58 -13.28 9.79 -35.23 -0.35 -13.63 16 12 C -0.05 -1.11 5.01 -104.58 -0.52 -1.63 16 13 C -0.12 -2.27 9.30 -39.62 -0.37 -2.63 16 14 C -0.12 -2.06 10.05 -39.62 -0.40 -2.46 16 15 C -0.13 -2.11 10.04 -39.54 -0.40 -2.51 16 16 C -0.11 -1.84 6.15 -104.05 -0.64 -2.48 16 17 C -0.09 -1.72 6.00 -104.20 -0.63 -2.35 16 18 C -0.08 -1.38 6.32 -26.85 -0.17 -1.55 16 19 C -0.12 -1.64 7.07 -25.33 -0.18 -1.82 16 20 C -0.08 -1.05 6.79 -26.70 -0.18 -1.23 16 21 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 22 H 0.36 7.22 7.31 45.56 0.33 7.55 16 23 H 0.12 2.09 6.40 -52.49 -0.34 1.75 16 24 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 25 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 26 H 0.07 1.25 7.70 -51.93 -0.40 0.85 16 27 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 255.58 15.07 3.85 3.85 Total: -1.00 -31.21 255.58 -7.65 -38.86 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -3.38 Total: 6.81 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: -3.97 Total: -26.69 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.77 Total: -26.22 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.35 Total: -13.63 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.59 Total: 17.02 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.21 -7.65 -38.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535696353.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.181 kcal (2) G-P(sol) polarization free energy of solvation -31.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds