Wall clock time and date at job start Mon Mar 30 2020 02:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86802 * 119.99434 * 2 1 4 4 H 1.48510 * 109.46669 * 269.99288 * 3 2 1 5 5 H 1.48494 * 109.47602 * 29.99651 * 3 2 1 6 6 H 1.48504 * 109.47176 * 150.00017 * 3 2 1 7 7 C 1.37869 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00173 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99963 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.47165 * 299.99834 * 9 7 2 11 11 O 1.42891 * 109.47297 * 60.00447 * 9 7 2 12 12 C 1.50708 * 109.46873 * 180.02562 * 9 7 2 13 13 C 1.38143 * 119.89025 * 265.02065 * 12 9 7 14 14 C 1.38216 * 119.93529 * 179.97438 * 13 12 9 15 15 C 1.38150 * 119.93066 * 359.97438 * 14 13 12 16 16 C 1.38449 * 120.21812 * 0.02562 * 15 14 13 17 17 C 1.38266 * 119.84778 * 0.02562 * 16 15 14 18 18 C 1.51375 * 109.74725 * 179.97438 * 17 16 15 19 19 C 1.54339 * 105.17535 * 342.80931 * 18 17 16 20 20 C 1.51674 * 130.32193 * 179.79840 * 16 15 14 21 21 H 0.96991 * 119.99981 * 0.02562 * 1 2 3 22 22 H 0.96708 * 114.00336 * 59.99725 * 11 9 7 23 23 H 1.08000 * 120.03478 * 0.02562 * 13 12 9 24 24 H 1.07995 * 120.03584 * 180.02562 * 14 13 12 25 25 H 1.08004 * 119.88914 * 180.02562 * 15 14 13 26 26 H 1.08997 * 110.29993 * 223.88203 * 18 17 16 27 27 H 1.09004 * 110.30295 * 101.73884 * 18 17 16 28 28 H 1.09002 * 110.82153 * 144.58253 * 19 18 17 29 29 H 1.09002 * 110.82354 * 267.93009 * 19 18 17 30 30 H 1.09005 * 110.25422 * 78.28582 * 20 16 15 31 31 H 1.09003 * 110.49278 * 316.04515 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8753 -0.6802 -0.8889 11 8 3.9875 -0.5201 1.1679 12 6 4.0140 -2.6147 0.0010 13 6 4.3411 -3.2294 1.1941 14 6 4.8014 -4.5327 1.1952 15 6 4.9330 -5.2181 0.0030 16 6 4.6057 -4.6038 -1.1938 17 6 4.1463 -3.2997 -1.1949 18 6 3.8603 -2.8593 -2.6146 19 6 4.6036 -3.8734 -3.5097 20 6 4.6643 -5.1298 -2.6152 21 1 -0.4850 0.8400 -0.0004 22 1 3.7019 -0.9235 1.9991 23 1 4.2364 -2.6924 2.1253 24 1 5.0571 -5.0149 2.1270 25 1 5.2924 -6.2366 0.0046 26 1 4.2445 -1.8533 -2.7831 27 1 2.7890 -2.8939 -2.8128 28 1 4.0390 -4.0731 -4.4204 29 1 5.6063 -3.5183 -3.7475 30 1 3.8101 -5.7774 -2.8134 31 1 5.5962 -5.6694 -2.7844 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535696353.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:07 Heat of formation + Delta-G solvation = -53.806738 kcal Electronic energy + Delta-G solvation = -14567.174134 eV Core-core repulsion = 12197.943517 eV Total energy + Delta-G solvation = -2369.230617 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.05504 -38.09123 -36.16081 -34.47710 -32.66928 -29.88600 -29.05216 -27.98299 -24.82608 -22.64891 -21.74957 -20.87196 -19.47276 -17.53867 -16.98445 -16.67660 -16.23339 -15.85437 -15.22037 -14.90267 -14.69507 -14.02431 -13.77538 -13.66595 -13.47053 -13.04280 -12.71801 -12.57262 -12.35340 -12.01498 -11.93408 -11.68042 -11.58281 -11.21633 -10.85418 -10.34236 -9.33336 -9.28610 -8.37939 -6.52940 0.56807 0.60581 1.36384 1.41528 1.71124 2.40208 2.93064 2.98722 3.61147 3.75496 3.96306 4.17988 4.20737 4.25059 4.30345 4.52793 4.67546 4.75240 4.86444 4.95401 4.96864 5.09924 5.15295 5.33986 5.37348 5.38259 5.43261 5.66270 5.75666 5.94626 6.06921 6.25731 6.58236 7.07642 7.27365 8.76139 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.033100 B = 0.010189 C = 0.008894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.719406 B = 2747.412120 C = 3147.442763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.031 3.969 3 Si 0.935 3.065 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.208 1.208 7 C -0.547 4.547 8 H 0.028 0.972 9 C 0.236 3.764 10 H 0.056 0.944 11 O -0.580 6.580 12 C -0.091 4.091 13 C -0.137 4.137 14 C -0.122 4.122 15 C -0.127 4.127 16 C -0.112 4.112 17 C -0.118 4.118 18 C -0.086 4.086 19 C -0.111 4.111 20 C -0.073 4.073 21 H 0.268 0.732 22 H 0.368 0.632 23 H 0.126 0.874 24 H 0.149 0.851 25 H 0.146 0.854 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.713 -9.065 -2.938 15.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.169 4.169 3 Si 0.759 3.241 4 H -0.208 1.208 5 H -0.219 1.219 6 H -0.130 1.130 7 C -0.585 4.585 8 H 0.047 0.953 9 C 0.178 3.822 10 H 0.074 0.926 11 O -0.388 6.388 12 C -0.091 4.091 13 C -0.154 4.154 14 C -0.139 4.139 15 C -0.145 4.145 16 C -0.112 4.112 17 C -0.119 4.119 18 C -0.123 4.123 19 C -0.148 4.148 20 C -0.110 4.110 21 H 0.077 0.923 22 H 0.217 0.783 23 H 0.144 0.856 24 H 0.167 0.833 25 H 0.164 0.836 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.848 -8.593 -3.381 15.022 hybrid contribution -0.899 0.673 0.540 1.246 sum 10.950 -7.920 -2.841 13.809 Atomic orbital electron populations 1.70073 1.08384 1.28464 1.50614 1.25841 0.95294 1.03386 0.92362 0.86035 0.81928 0.77513 0.78652 1.20819 1.21922 1.12959 1.21495 0.91118 0.92935 1.52926 0.95329 1.18499 0.91189 0.86775 0.85743 0.92638 1.86622 1.77649 1.57628 1.16875 1.20428 0.97349 0.97717 0.93599 1.20997 1.01041 0.96237 0.97171 1.21286 0.99729 0.93866 0.99068 1.20872 1.01853 1.00786 0.90956 1.21080 0.99115 0.94148 0.96824 1.20618 1.00306 0.95987 0.94944 1.21049 1.00429 0.99936 0.90882 1.22308 1.01000 0.93810 0.97683 1.21123 1.03495 0.97863 0.88516 0.92300 0.78306 0.85595 0.83306 0.83588 0.91961 0.92043 0.88909 0.90015 0.89751 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.72 13.96 21.45 0.30 -58.42 16 2 C 0.03 1.82 5.47 84.65 0.46 2.29 16 3 Si 0.94 45.57 26.99 68.60 1.85 47.42 16 4 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.21 -9.71 5.31 99.48 0.53 -9.18 16 7 C -0.55 -31.65 9.33 25.60 0.24 -31.41 16 8 H 0.03 1.86 7.98 -2.91 -0.02 1.84 16 9 C 0.24 11.48 2.37 29.10 0.07 11.55 16 10 H 0.06 2.78 6.91 -2.39 -0.02 2.76 16 11 O -0.58 -26.48 9.79 -148.98 -1.46 -27.94 16 12 C -0.09 -3.92 5.01 -19.83 -0.10 -4.02 16 13 C -0.14 -5.10 9.30 22.24 0.21 -4.90 16 14 C -0.12 -3.72 10.05 22.24 0.22 -3.49 16 15 C -0.13 -3.67 10.04 22.30 0.22 -3.45 16 16 C -0.11 -3.58 6.15 -19.50 -0.12 -3.70 16 17 C -0.12 -4.64 6.00 -19.59 -0.12 -4.76 16 18 C -0.09 -3.03 6.32 30.52 0.19 -2.83 16 19 C -0.11 -2.73 7.07 31.50 0.22 -2.51 16 20 C -0.07 -1.76 6.79 30.61 0.21 -1.55 16 21 H 0.27 15.74 8.31 -92.72 -0.77 14.96 16 22 H 0.37 14.86 7.31 -74.05 -0.54 14.32 16 23 H 0.13 4.34 6.40 -2.91 -0.02 4.32 16 24 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 25 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 26 H 0.06 2.23 7.70 -2.39 -0.02 2.21 16 27 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 28 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -69.28 255.58 2.81 -66.47 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.41 Total: 21.25 kcal Atomic # 6 Polarization: -50.50 SS G_CDS: 1.71 Total: -48.79 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.30 Total: -58.42 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -1.46 Total: -27.94 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.85 Total: 47.42 kcal Total: -69.28 2.81 -66.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535696353.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.663 kcal (2) G-P(sol) polarization free energy of solvation -69.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds