Wall clock time and date at job start Mon Mar 30 2020 02:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 11 11 O 1.42896 * 109.46725 * 60.00282 * 9 7 2 12 12 C 1.50701 * 109.46789 * 180.02562 * 9 7 2 13 13 C 1.38255 * 120.03295 * 279.72206 * 12 9 7 14 14 C 1.38097 * 119.93464 * 179.70442 * 13 12 9 15 15 C 1.38501 * 120.21647 * 0.59644 * 14 13 12 16 16 C 1.38223 * 119.84554 * 359.68492 * 15 14 13 17 17 C 1.38098 * 120.03441 * 100.00330 * 12 9 7 18 18 C 1.51374 * 109.75093 * 180.02562 * 16 15 14 19 19 C 1.54346 * 105.17440 * 342.81117 * 18 16 15 20 20 C 1.51363 * 130.39290 * 179.71155 * 15 14 13 21 21 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 22 22 H 0.96696 * 114.00142 * 60.00168 * 11 9 7 23 23 H 1.08008 * 120.02908 * 359.97438 * 13 12 9 24 24 H 1.08003 * 119.89214 * 180.29884 * 14 13 12 25 25 H 1.08008 * 119.89134 * 359.97382 * 17 12 9 26 26 H 1.08995 * 110.30095 * 101.74035 * 18 16 15 27 27 H 1.09000 * 110.29455 * 223.88717 * 18 16 15 28 28 H 1.08998 * 110.82444 * 268.12718 * 19 18 16 29 29 H 1.08995 * 110.99083 * 144.64877 * 19 18 16 30 30 H 1.09003 * 110.30023 * 316.09380 * 20 15 14 31 31 H 1.08998 * 110.30282 * 78.24186 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8897 11 8 0.4292 -2.5746 -1.1670 12 6 2.2305 -3.6445 -0.0005 13 6 2.8338 -4.0391 -1.1803 14 6 3.7356 -5.0849 -1.1769 15 6 4.0289 -5.7487 0.0028 16 6 3.4213 -5.3579 1.1813 17 6 2.5219 -4.3048 1.1768 18 6 3.9040 -6.2311 2.3197 19 6 4.5310 -7.4681 1.6422 20 6 4.9612 -6.9110 0.2687 21 1 -0.4849 -0.8401 0.0004 22 1 0.9210 -2.5291 -1.9983 23 1 2.6033 -3.5270 -2.1029 24 1 4.2102 -5.3894 -2.0981 25 1 2.0470 -3.9987 2.0974 26 1 4.6526 -5.7030 2.9101 27 1 3.0656 -6.5290 2.9494 28 1 3.7927 -8.2613 1.5244 29 1 5.3945 -7.8249 2.2034 30 1 4.8449 -7.6730 -0.5020 31 1 5.9944 -6.5659 0.3075 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535700459.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:12 Heat of formation + Delta-G solvation = -47.383952 kcal Electronic energy + Delta-G solvation = -14235.712092 eV Core-core repulsion = 11866.759988 eV Total energy + Delta-G solvation = -2368.952104 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.69522 -36.73919 -34.46177 -32.18014 -31.08654 -28.98308 -27.34999 -25.59117 -22.77381 -22.04997 -20.55223 -19.52061 -17.28103 -16.20514 -15.51226 -15.25286 -14.52784 -13.94819 -13.73242 -13.02055 -12.81857 -12.69240 -12.53909 -12.40699 -11.90755 -11.50168 -11.13120 -11.05012 -10.79091 -10.62541 -10.38908 -10.15474 -10.13656 -9.45577 -8.54356 -8.35801 -8.16336 -7.67108 -6.38093 -4.22906 1.92502 1.96962 3.40845 3.43921 3.60447 4.28978 4.51180 4.65617 4.77999 5.04763 5.29533 5.36263 5.48285 5.50987 5.77598 5.78787 5.82984 5.89218 5.94009 6.00327 6.16973 6.19391 6.25862 6.54912 6.65734 6.98315 7.02218 7.09479 7.55502 7.62087 7.93603 8.33567 8.81848 9.02058 9.61833 11.00475 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.044294 B = 0.007252 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.986505 B = 3859.852498 C = 3966.776225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.035 3.965 3 Si 1.070 2.930 4 H -0.287 1.287 5 H -0.283 1.283 6 H -0.288 1.288 7 C -0.639 4.639 8 H 0.052 0.948 9 C 0.242 3.758 10 H 0.059 0.941 11 O -0.577 6.577 12 C -0.060 4.060 13 C -0.115 4.115 14 C -0.109 4.109 15 C -0.127 4.127 16 C -0.102 4.102 17 C -0.109 4.109 18 C -0.079 4.079 19 C -0.119 4.119 20 C -0.075 4.075 21 H 0.284 0.716 22 H 0.354 0.646 23 H 0.119 0.881 24 H 0.111 0.889 25 H 0.114 0.886 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.493 -11.632 1.137 14.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.174 4.174 3 Si 0.898 3.102 4 H -0.213 1.213 5 H -0.209 1.209 6 H -0.214 1.214 7 C -0.677 4.677 8 H 0.070 0.930 9 C 0.185 3.815 10 H 0.077 0.923 11 O -0.382 6.382 12 C -0.060 4.060 13 C -0.133 4.133 14 C -0.127 4.127 15 C -0.127 4.127 16 C -0.102 4.102 17 C -0.127 4.127 18 C -0.116 4.116 19 C -0.157 4.157 20 C -0.113 4.113 21 H 0.096 0.904 22 H 0.200 0.800 23 H 0.137 0.863 24 H 0.129 0.871 25 H 0.132 0.868 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.807 -10.056 1.595 12.830 hybrid contribution 0.768 -1.517 -0.359 1.738 sum 8.575 -11.573 1.237 14.457 Atomic orbital electron populations 1.70614 1.06901 1.32283 1.42778 1.25843 0.96479 1.02439 0.92644 0.83546 0.74715 0.75034 0.76869 1.21338 1.20867 1.21436 1.22375 0.94497 0.91508 1.59323 0.93003 1.18661 0.87254 0.89746 0.85839 0.92315 1.86517 1.39078 1.96507 1.16145 1.21029 0.97026 0.95539 0.92420 1.20770 0.97238 0.96925 0.98369 1.20481 0.98914 0.96696 0.96582 1.20357 0.99736 0.98763 0.93852 1.20452 0.97597 0.96910 0.95246 1.20457 0.98723 0.95369 0.98187 1.20990 0.99985 0.94601 0.96070 1.22266 1.00318 0.97284 0.95823 1.20938 0.98024 0.95196 0.97096 0.90391 0.79989 0.86337 0.87137 0.86815 0.90675 0.91169 0.91287 0.91028 0.91436 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.53 55.43 0.75 -26.39 16 2 C 0.03 0.99 5.40 -17.82 -0.10 0.90 16 3 Si 1.07 25.15 29.90 -169.99 -5.08 20.07 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.64 -17.97 8.74 -34.44 -0.30 -18.27 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.24 6.25 2.67 -29.03 -0.08 6.17 16 10 H 0.06 1.62 7.87 -51.93 -0.41 1.21 16 11 O -0.58 -14.77 11.86 -35.23 -0.42 -15.19 16 12 C -0.06 -1.33 4.91 -104.67 -0.51 -1.85 16 13 C -0.11 -2.30 9.32 -39.63 -0.37 -2.67 16 14 C -0.11 -1.89 10.04 -39.54 -0.40 -2.29 16 15 C -0.13 -2.11 6.14 -104.20 -0.64 -2.75 16 16 C -0.10 -1.79 6.14 -104.20 -0.64 -2.42 16 17 C -0.11 -2.22 9.66 -39.54 -0.38 -2.61 16 18 C -0.08 -1.06 6.77 -26.85 -0.18 -1.25 16 19 C -0.12 -1.33 7.08 -25.32 -0.18 -1.51 16 20 C -0.08 -0.95 6.77 -26.86 -0.18 -1.13 16 21 H 0.28 8.80 6.47 -40.82 -0.26 8.54 16 22 H 0.35 8.05 7.50 45.56 0.34 8.39 16 23 H 0.12 2.24 6.78 -52.48 -0.36 1.88 16 24 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 25 H 0.11 2.23 8.03 -52.48 -0.42 1.81 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 261.55 15.07 3.94 3.94 Total: -1.00 -31.26 261.55 -8.04 -39.30 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -3.27 Total: 7.94 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: -3.96 Total: -29.67 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.75 Total: -26.39 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.42 Total: -15.19 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.07 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.26 -8.04 -39.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535700459.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.084 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds