Wall clock time and date at job start Mon Mar 30 2020 02:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 11 11 O 1.42896 * 109.46725 * 60.00282 * 9 7 2 12 12 C 1.50701 * 109.46789 * 180.02562 * 9 7 2 13 13 C 1.38255 * 120.03295 * 279.72206 * 12 9 7 14 14 C 1.38097 * 119.93464 * 179.70442 * 13 12 9 15 15 C 1.38501 * 120.21647 * 0.59644 * 14 13 12 16 16 C 1.38223 * 119.84554 * 359.68492 * 15 14 13 17 17 C 1.38098 * 120.03441 * 100.00330 * 12 9 7 18 18 C 1.51374 * 109.75093 * 180.02562 * 16 15 14 19 19 C 1.54346 * 105.17440 * 342.81117 * 18 16 15 20 20 C 1.51363 * 130.39290 * 179.71155 * 15 14 13 21 21 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 22 22 H 0.96696 * 114.00142 * 60.00168 * 11 9 7 23 23 H 1.08008 * 120.02908 * 359.97438 * 13 12 9 24 24 H 1.08003 * 119.89214 * 180.29884 * 14 13 12 25 25 H 1.08008 * 119.89134 * 359.97382 * 17 12 9 26 26 H 1.08995 * 110.30095 * 101.74035 * 18 16 15 27 27 H 1.09000 * 110.29455 * 223.88717 * 18 16 15 28 28 H 1.08998 * 110.82444 * 268.12718 * 19 18 16 29 29 H 1.08995 * 110.99083 * 144.64877 * 19 18 16 30 30 H 1.09003 * 110.30023 * 316.09380 * 20 15 14 31 31 H 1.08998 * 110.30282 * 78.24186 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8897 11 8 0.4292 -2.5746 -1.1670 12 6 2.2305 -3.6445 -0.0005 13 6 2.8338 -4.0391 -1.1803 14 6 3.7356 -5.0849 -1.1769 15 6 4.0289 -5.7487 0.0028 16 6 3.4213 -5.3579 1.1813 17 6 2.5219 -4.3048 1.1768 18 6 3.9040 -6.2311 2.3197 19 6 4.5310 -7.4681 1.6422 20 6 4.9612 -6.9110 0.2687 21 1 -0.4849 -0.8401 0.0004 22 1 0.9210 -2.5291 -1.9983 23 1 2.6033 -3.5270 -2.1029 24 1 4.2102 -5.3894 -2.0981 25 1 2.0470 -3.9987 2.0974 26 1 4.6526 -5.7030 2.9101 27 1 3.0656 -6.5290 2.9494 28 1 3.7927 -8.2613 1.5244 29 1 5.3945 -7.8249 2.2034 30 1 4.8449 -7.6730 -0.5020 31 1 5.9944 -6.5659 0.3075 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535700459.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:12 Heat of formation + Delta-G solvation = -67.075797 kcal Electronic energy + Delta-G solvation = -14236.565995 eV Core-core repulsion = 11866.759988 eV Total energy + Delta-G solvation = -2369.806006 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.06605 -38.49449 -35.97477 -34.37332 -32.51893 -30.47023 -28.66251 -27.38542 -24.69745 -23.44987 -21.64413 -21.08108 -19.42993 -17.88995 -16.86495 -16.50973 -15.93551 -15.82542 -15.44228 -14.86431 -14.49094 -14.23805 -14.06933 -13.69856 -13.37562 -12.82097 -12.64731 -12.41200 -12.28535 -12.01484 -11.96047 -11.85558 -11.59740 -11.33376 -10.70588 -10.33457 -9.66977 -9.24081 -8.65023 -6.53438 0.47011 0.48303 1.49855 1.58285 1.77221 2.51227 2.83156 3.10590 3.51067 3.69048 3.92077 4.11857 4.14981 4.20088 4.21578 4.42807 4.63157 4.72186 4.79806 4.89521 4.94439 4.99362 5.12355 5.24663 5.33160 5.37706 5.53104 5.69283 5.71804 5.90040 6.05912 6.14559 6.49119 7.03427 7.41456 8.68809 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.044294 B = 0.007252 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.986505 B = 3859.852498 C = 3966.776225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.016 4.016 3 Si 1.120 2.880 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.645 4.645 8 H 0.045 0.955 9 C 0.244 3.756 10 H 0.025 0.975 11 O -0.588 6.588 12 C -0.094 4.094 13 C -0.130 4.130 14 C -0.108 4.108 15 C -0.124 4.124 16 C -0.109 4.109 17 C -0.132 4.132 18 C -0.082 4.082 19 C -0.111 4.111 20 C -0.074 4.074 21 H 0.267 0.733 22 H 0.365 0.635 23 H 0.120 0.880 24 H 0.144 0.856 25 H 0.104 0.896 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.191 -13.291 1.085 17.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.218 4.218 3 Si 0.941 3.059 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.682 4.682 8 H 0.063 0.937 9 C 0.187 3.813 10 H 0.043 0.957 11 O -0.394 6.394 12 C -0.094 4.094 13 C -0.148 4.148 14 C -0.125 4.125 15 C -0.124 4.124 16 C -0.109 4.109 17 C -0.150 4.150 18 C -0.119 4.119 19 C -0.148 4.148 20 C -0.111 4.111 21 H 0.078 0.922 22 H 0.212 0.788 23 H 0.138 0.862 24 H 0.162 0.838 25 H 0.122 0.878 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.107 0.893 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.513 -11.742 1.544 15.836 hybrid contribution -0.044 -1.125 -0.337 1.175 sum 10.469 -12.867 1.207 16.632 Atomic orbital electron populations 1.70756 1.07924 1.31182 1.45410 1.27394 0.96487 1.06405 0.91490 0.82921 0.74124 0.71039 0.77844 1.19784 1.20500 1.19594 1.22641 0.94233 0.92868 1.58496 0.93692 1.18397 0.87255 0.91006 0.84644 0.95682 1.86444 1.39651 1.96632 1.16715 1.20723 0.98229 0.95968 0.94483 1.20878 0.98206 0.98246 0.97459 1.20824 0.97770 0.95423 0.98526 1.21013 0.99232 0.99221 0.92912 1.20937 0.96211 0.95949 0.97781 1.20527 1.00300 0.96971 0.97241 1.21145 1.00653 0.95037 0.95061 1.22311 1.01505 0.96084 0.94895 1.21082 0.97626 0.93847 0.98524 0.92241 0.78796 0.86225 0.83800 0.87810 0.89621 0.90464 0.90467 0.87985 0.89330 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.74 13.53 21.45 0.29 -57.45 16 2 C -0.02 -0.92 5.40 84.65 0.46 -0.47 16 3 Si 1.12 50.85 29.90 68.60 2.05 52.90 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.65 -37.47 8.74 25.60 0.22 -37.24 16 8 H 0.04 2.62 7.74 -2.91 -0.02 2.59 16 9 C 0.24 13.32 2.67 29.10 0.08 13.39 16 10 H 0.03 1.51 7.87 -2.39 -0.02 1.49 16 11 O -0.59 -31.61 11.86 -148.98 -1.77 -33.38 16 12 C -0.09 -4.34 4.91 -19.89 -0.10 -4.44 16 13 C -0.13 -5.21 9.32 22.24 0.21 -5.00 16 14 C -0.11 -3.52 10.04 22.30 0.22 -3.30 16 15 C -0.12 -3.76 6.14 -19.59 -0.12 -3.88 16 16 C -0.11 -3.66 6.14 -19.59 -0.12 -3.78 16 17 C -0.13 -5.54 9.66 22.30 0.22 -5.33 16 18 C -0.08 -1.96 6.77 30.52 0.21 -1.75 16 19 C -0.11 -1.94 7.08 31.51 0.22 -1.72 16 20 C -0.07 -1.50 6.77 30.51 0.21 -1.29 16 21 H 0.27 17.40 6.47 -92.71 -0.60 16.80 16 22 H 0.36 17.34 7.50 -74.06 -0.56 16.79 16 23 H 0.12 4.59 6.78 -2.91 -0.02 4.57 16 24 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 25 H 0.10 4.36 8.03 -2.91 -0.02 4.33 16 26 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -69.89 261.55 3.02 -66.88 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.74 Total: 25.86 kcal Atomic # 6 Polarization: -56.51 SS G_CDS: 1.70 Total: -54.81 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.29 Total: -57.45 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -1.77 Total: -33.38 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 2.05 Total: 52.90 kcal Total: -69.89 3.02 -66.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535700459.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.200 kcal (2) G-P(sol) polarization free energy of solvation -69.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds