Wall clock time and date at job start Mon Mar 30 2020 02:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99999 * 2 1 4 4 H 1.48502 * 109.47139 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47225 * 299.99953 * 3 2 1 6 6 H 1.48501 * 109.47378 * 60.00573 * 3 2 1 7 7 C 1.37879 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99821 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99983 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.46855 * 324.27497 * 9 7 2 11 11 O 1.42898 * 109.46916 * 84.27979 * 9 7 2 12 12 C 1.53003 * 109.46843 * 204.27533 * 9 7 2 13 13 C 1.50695 * 115.54908 * 168.72259 * 12 9 7 14 14 C 1.38231 * 120.00234 * 119.81633 * 13 12 9 15 15 C 1.38237 * 120.00116 * 179.81146 * 14 13 12 16 16 C 1.38243 * 120.00048 * 0.41786 * 15 14 13 17 17 C 1.38241 * 119.99602 * 359.81632 * 16 15 14 18 18 C 1.38230 * 119.99844 * 359.97438 * 17 16 15 19 19 C 1.52997 * 117.49870 * 23.04999 * 12 9 7 20 20 C 1.53001 * 117.50095 * 314.39363 * 12 9 7 21 21 H 0.97002 * 120.00023 * 359.97438 * 1 2 3 22 22 H 0.96696 * 114.00687 * 59.99576 * 11 9 7 23 23 H 1.07997 * 120.00140 * 0.02562 * 14 13 12 24 24 H 1.08003 * 120.00415 * 180.21497 * 15 14 13 25 25 H 1.07994 * 120.00059 * 179.79029 * 16 15 14 26 26 H 1.07995 * 119.99520 * 179.97438 * 17 16 15 27 27 H 1.08001 * 119.99546 * 179.97438 * 18 17 16 28 28 H 1.09001 * 117.50113 * 0.02562 * 19 12 9 29 29 H 1.09003 * 117.49512 * 145.01720 * 19 12 9 30 30 H 1.09001 * 117.49914 * 214.98148 * 20 12 9 31 31 H 1.09003 * 117.49928 * 359.97438 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.3470 -2.3967 0.5999 11 8 0.8959 -2.8442 -1.3410 12 6 2.1349 -3.5985 0.5919 13 6 1.4364 -4.8969 0.9035 14 6 1.8421 -6.0655 0.2866 15 6 1.2038 -7.2572 0.5753 16 6 0.1541 -7.2789 1.4746 17 6 -0.2548 -6.1094 2.0879 18 6 0.3863 -4.9185 1.8024 19 6 3.2714 -3.1671 1.5209 20 6 3.5855 -3.6743 0.1113 21 1 -0.4850 0.8401 0.0004 22 1 1.6528 -2.9517 -1.9332 23 1 2.6600 -6.0480 -0.4184 24 1 1.5231 -8.1708 0.0959 25 1 -0.3467 -8.2093 1.6977 26 1 -1.0751 -6.1263 2.7901 27 1 0.0666 -4.0048 2.2813 28 1 3.3892 -2.1001 1.7104 29 1 3.5141 -3.8226 2.3573 30 1 4.0346 -4.6634 0.0208 31 1 3.9099 -2.9413 -0.6273 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535909725.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:09 Heat of formation + Delta-G solvation = -24.965783 kcal Electronic energy + Delta-G solvation = -14482.391024 eV Core-core repulsion = 12114.411045 eV Total energy + Delta-G solvation = -2367.979979 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.70395 -38.55014 -35.97488 -34.38884 -31.74629 -31.38255 -28.89881 -25.77808 -23.78272 -23.41827 -22.54038 -20.24547 -19.23512 -17.68451 -16.85790 -16.65229 -15.86063 -15.58015 -15.45395 -15.03869 -14.85299 -14.17367 -13.82391 -13.55172 -13.00697 -12.87276 -12.75484 -12.31278 -12.14542 -12.05975 -11.91728 -11.50337 -10.93692 -10.78500 -10.61176 -10.23918 -9.74133 -9.34723 -8.17971 -6.38749 0.56100 0.57730 1.38484 1.39994 1.51796 2.37581 2.88264 3.08352 3.15267 3.85379 4.02281 4.12109 4.22851 4.28598 4.35526 4.46687 4.65316 4.77817 4.82507 4.86109 5.09612 5.17816 5.23913 5.32218 5.48662 5.57541 5.65980 5.68463 5.73294 5.92026 6.11293 6.23686 6.79225 7.34800 7.48178 8.89394 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.044257 B = 0.008370 C = 0.007888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.510079 B = 3344.591630 C = 3549.003470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.961 3.039 4 H -0.258 1.258 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.559 4.559 8 H 0.072 0.928 9 C 0.261 3.739 10 H 0.031 0.969 11 O -0.594 6.594 12 C -0.128 4.128 13 C -0.044 4.044 14 C -0.129 4.129 15 C -0.120 4.120 16 C -0.133 4.133 17 C -0.125 4.125 18 C -0.139 4.139 19 C -0.154 4.154 20 C -0.152 4.152 21 H 0.262 0.738 22 H 0.358 0.642 23 H 0.131 0.869 24 H 0.150 0.850 25 H 0.151 0.849 26 H 0.137 0.863 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.037 -11.790 2.621 13.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.182 4.182 3 Si 0.786 3.214 4 H -0.182 1.182 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.597 4.597 8 H 0.090 0.910 9 C 0.204 3.796 10 H 0.049 0.951 11 O -0.399 6.399 12 C -0.128 4.128 13 C -0.044 4.044 14 C -0.147 4.147 15 C -0.138 4.138 16 C -0.151 4.151 17 C -0.143 4.143 18 C -0.158 4.158 19 C -0.191 4.191 20 C -0.189 4.189 21 H 0.071 0.929 22 H 0.204 0.796 23 H 0.149 0.851 24 H 0.168 0.832 25 H 0.168 0.832 26 H 0.155 0.845 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.127 0.873 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.281 -11.658 2.886 12.750 hybrid contribution 0.446 1.386 -0.142 1.463 sum 4.727 -10.271 2.744 11.635 Atomic orbital electron populations 1.70158 1.07971 1.27569 1.50074 1.25969 0.95482 1.03274 0.93469 0.85480 0.79368 0.79070 0.77509 1.18170 1.20873 1.20580 1.22065 0.93920 0.91851 1.51869 0.90963 1.18759 0.92634 0.88526 0.79657 0.95070 1.86506 1.37257 1.92833 1.23286 1.21053 0.90663 0.95066 1.06053 1.19320 0.95787 0.93571 0.95713 1.21229 1.01273 0.92112 1.00066 1.21463 0.96147 0.98065 0.98114 1.21447 0.97699 0.98580 0.97388 1.21356 1.00001 0.92341 1.00587 1.21084 0.97045 0.98391 0.99233 1.22988 1.00990 1.01636 0.93440 1.22946 0.96021 1.02405 0.97498 0.92890 0.79619 0.85141 0.83206 0.83167 0.84475 0.88423 0.88962 0.88794 0.87305 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.86 12.97 21.45 0.28 -55.58 16 2 C 0.02 1.04 5.46 84.66 0.46 1.50 16 3 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.56 -30.17 7.09 25.60 0.18 -29.99 16 8 H 0.07 3.67 5.54 -2.91 -0.02 3.66 16 9 C 0.26 13.68 2.93 29.85 0.09 13.77 16 10 H 0.03 1.92 7.21 -2.39 -0.02 1.90 16 11 O -0.59 -31.46 13.32 -148.98 -1.98 -33.44 16 12 C -0.13 -5.33 1.96 -52.93 -0.10 -5.43 16 13 C -0.04 -1.68 5.18 -19.87 -0.10 -1.78 16 14 C -0.13 -4.07 9.26 22.27 0.21 -3.87 16 15 C -0.12 -3.13 10.05 22.27 0.22 -2.90 16 16 C -0.13 -3.41 10.05 22.27 0.22 -3.18 16 17 C -0.12 -3.78 10.05 22.27 0.22 -3.55 16 18 C -0.14 -5.29 9.39 22.27 0.21 -5.08 16 19 C -0.15 -5.81 9.38 30.61 0.29 -5.52 16 20 C -0.15 -5.29 8.98 30.62 0.27 -5.02 16 21 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 22 H 0.36 16.22 9.04 -74.06 -0.67 15.55 16 23 H 0.13 3.66 6.72 -2.91 -0.02 3.64 16 24 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 25 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 26 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 27 H 0.10 4.04 7.88 -2.91 -0.02 4.02 16 28 H 0.09 3.83 6.45 -2.39 -0.02 3.82 16 29 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 30 H 0.11 3.12 6.85 -2.39 -0.02 3.11 16 31 H 0.09 3.30 7.12 -2.39 -0.02 3.28 16 Total: -1.00 -66.33 264.34 2.96 -63.37 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.47 Total: 31.22 kcal Atomic # 6 Polarization: -53.24 SS G_CDS: 2.17 Total: -51.06 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.28 Total: -55.58 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.98 Total: -33.44 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -66.33 2.96 -63.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535909725.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.409 kcal (2) G-P(sol) polarization free energy of solvation -66.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds