Wall clock time and date at job start Mon Mar 30 2020 02:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86800 * 120.00239 * 2 1 4 4 H 1.48505 * 109.47154 * 239.99793 * 3 2 1 5 5 H 1.48510 * 109.47226 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47735 * 119.99678 * 3 2 1 7 7 C 1.38790 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00464 * 165.07775 * 7 2 1 9 9 N 1.36858 * 119.99689 * 345.07854 * 7 2 1 10 10 C 1.46911 * 120.52063 * 333.21701 * 9 7 2 11 11 C 1.53435 * 107.85564 * 224.78040 * 10 9 7 12 12 C 1.52862 * 108.82685 * 296.82825 * 11 10 9 13 13 C 1.50588 * 110.47091 * 51.16574 * 12 11 10 14 14 C 1.39105 * 118.95432 * 159.49465 * 13 12 11 15 15 N 1.39682 * 119.91686 * 359.84233 * 14 13 12 16 16 C 1.38859 * 120.16224 * 179.85011 * 14 13 12 17 17 C 1.38222 * 120.10346 * 359.97366 * 16 14 13 18 18 C 1.38020 * 120.00939 * 0.11618 * 17 16 14 19 19 C 1.38628 * 121.53304 * 339.47865 * 13 12 11 20 20 H 0.97003 * 119.99949 * 5.22710 * 1 2 3 21 21 H 1.09001 * 109.79805 * 105.17313 * 10 9 7 22 22 H 1.09001 * 109.79541 * 344.38058 * 10 9 7 23 23 H 1.09008 * 109.57763 * 56.62516 * 11 10 9 24 24 H 1.09002 * 109.58093 * 176.88969 * 11 10 9 25 25 H 1.08994 * 109.30757 * 171.47685 * 12 11 10 26 26 H 1.08998 * 109.29900 * 290.86634 * 12 11 10 27 27 H 0.96997 * 120.00455 * 359.97438 * 15 14 13 28 28 H 0.96999 * 119.99801 * 179.97438 * 15 14 13 29 29 H 1.07998 * 119.94359 * 179.97438 * 16 14 13 30 30 H 1.07997 * 119.98915 * 180.09835 * 17 16 14 31 31 H 1.08004 * 119.90890 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.1038 1.6963 -1.2125 5 1 1.2849 2.7465 -0.0006 6 1 3.1037 1.6965 1.2125 7 6 2.0099 -1.2019 0.0005 8 1 3.0625 -1.2179 -0.2403 9 7 1.3602 -2.3670 0.3063 10 6 0.1712 -2.3540 1.1691 11 6 0.3133 -3.4968 2.1831 12 6 0.3323 -4.8261 1.4287 13 6 1.3501 -4.7877 0.3195 14 6 1.8300 -5.9873 -0.1959 15 7 1.3687 -7.2010 0.3191 16 6 2.7667 -5.9812 -1.2211 17 6 3.2255 -4.7823 -1.7338 18 6 2.7545 -3.5888 -1.2253 19 6 1.8159 -3.5880 -0.1958 20 1 -0.4850 0.8366 -0.0765 21 1 -0.7242 -2.5048 0.5662 22 1 0.1065 -1.4009 1.6940 23 1 1.2438 -3.3787 2.7385 24 1 -0.5294 -3.4788 2.8742 25 1 0.5838 -5.6297 2.1208 26 1 -0.6545 -5.0145 1.0057 27 1 0.7148 -7.2067 1.0355 28 1 1.7023 -8.0382 -0.0398 29 1 3.1372 -6.9146 -1.6184 30 1 3.9527 -4.7797 -2.5321 31 1 3.1144 -2.6530 -1.6269 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037906201.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:10 Heat of formation + Delta-G solvation = 29.266842 kcal Electronic energy + Delta-G solvation = -14741.885779 eV Core-core repulsion = 12408.550254 eV Total energy + Delta-G solvation = -2333.335525 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.11076 -36.17001 -33.93121 -32.93172 -30.81947 -29.07726 -26.99198 -25.67235 -23.19255 -22.20337 -20.53421 -18.70636 -17.31386 -16.20298 -16.08846 -14.82870 -14.69597 -13.94516 -13.86274 -13.26335 -12.82056 -12.56356 -12.51451 -12.01234 -11.60008 -11.34395 -11.08025 -10.83437 -10.61805 -10.45924 -10.24805 -9.86575 -9.66691 -9.48643 -8.98562 -8.32686 -6.77028 -6.40941 -6.24904 -3.68271 2.65697 2.87972 3.21846 3.22496 3.24797 4.10591 4.57428 4.84025 5.09093 5.17846 5.69319 5.79869 5.94008 6.07528 6.22207 6.37054 6.44987 6.66259 6.67902 6.77549 6.90078 6.93939 7.10206 7.31597 7.42075 7.46222 7.66244 7.74938 7.84074 8.09576 8.43786 8.47361 8.75843 9.39845 9.77842 10.72129 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.038855 B = 0.010027 C = 0.008314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.456652 B = 2791.873218 C = 3367.203751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.026 3.974 3 Si 0.923 3.077 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.092 0.908 9 N -0.450 5.450 10 C 0.148 3.852 11 C -0.142 4.142 12 C -0.046 4.046 13 C -0.272 4.272 14 C 0.255 3.745 15 N -0.888 5.888 16 C -0.303 4.303 17 C -0.039 4.039 18 C -0.247 4.247 19 C 0.252 3.748 20 H 0.269 0.731 21 H 0.049 0.951 22 H 0.087 0.913 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.389 0.611 28 H 0.387 0.613 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.907 -7.203 2.099 7.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.178 4.178 3 Si 0.750 3.250 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.427 4.427 8 H 0.109 0.891 9 N -0.137 5.137 10 C 0.025 3.975 11 C -0.181 4.181 12 C -0.083 4.083 13 C -0.283 4.283 14 C 0.151 3.849 15 N -0.428 5.428 16 C -0.329 4.329 17 C -0.059 4.059 18 C -0.272 4.272 19 C 0.135 3.865 20 H 0.079 0.921 21 H 0.067 0.933 22 H 0.106 0.894 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.217 0.783 28 H 0.214 0.786 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.645 -6.643 2.263 7.048 hybrid contribution 0.228 0.490 -0.013 0.541 sum 0.874 -6.153 2.250 6.610 Atomic orbital electron populations 1.69990 1.05860 1.27833 1.47921 1.25357 0.95547 0.99690 0.97174 0.86034 0.78980 0.80922 0.79025 1.19848 1.20935 1.19955 1.19477 0.93962 0.83094 1.46206 0.89082 1.42703 1.26056 1.02533 1.42392 1.21358 0.87986 0.97306 0.90896 1.21991 1.01045 0.96612 0.98422 1.19865 0.96858 0.96693 0.94916 1.18296 1.11625 0.90685 1.07710 1.17240 0.91482 0.84768 0.91361 1.42439 1.51293 1.05137 1.43973 1.19769 1.09447 0.97073 1.06614 1.20348 0.96639 0.92043 0.96889 1.20427 1.06746 0.97464 1.02519 1.17538 0.93251 0.85416 0.90344 0.92104 0.93311 0.89434 0.92272 0.92263 0.93416 0.93308 0.78309 0.78612 0.88768 0.88215 0.86931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.74 11.14 55.49 0.62 -23.12 16 2 C 0.03 0.67 4.97 -17.45 -0.09 0.59 16 3 Si 0.92 20.28 29.58 -169.99 -5.03 15.25 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.30 -7.99 8.65 -15.10 -0.13 -8.13 16 8 H 0.09 2.39 6.88 -52.49 -0.36 2.03 16 9 N -0.45 -11.61 2.99 -112.53 -0.34 -11.94 16 10 C 0.15 3.53 4.96 -3.59 -0.02 3.51 16 11 C -0.14 -2.80 6.12 -26.58 -0.16 -2.96 16 12 C -0.05 -0.87 5.08 -28.01 -0.14 -1.01 16 13 C -0.27 -5.91 5.78 -104.21 -0.60 -6.51 16 14 C 0.25 4.98 6.73 -83.73 -0.56 4.42 16 15 N -0.89 -13.27 8.97 32.44 0.29 -12.98 16 16 C -0.30 -5.92 9.88 -39.36 -0.39 -6.31 16 17 C -0.04 -0.80 10.04 -39.67 -0.40 -1.20 16 18 C -0.25 -5.78 9.19 -39.26 -0.36 -6.14 16 19 C 0.25 6.16 6.32 -83.75 -0.53 5.63 16 20 H 0.27 6.90 8.32 -40.82 -0.34 6.56 16 21 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 22 H 0.09 2.20 6.45 -51.93 -0.33 1.87 16 23 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.05 0.78 6.93 -51.93 -0.36 0.42 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.39 5.23 6.91 -40.82 -0.28 4.95 16 28 H 0.39 4.80 8.84 -40.82 -0.36 4.44 16 29 H 0.09 1.61 8.06 -52.49 -0.42 1.18 16 30 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.11 2.69 6.58 -52.48 -0.35 2.34 16 LS Contribution 251.31 15.07 3.79 3.79 Total: -1.00 -28.49 251.31 -7.77 -36.26 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -3.72 Total: 10.86 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -3.38 Total: -18.11 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.57 Total: -48.05 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.49 -7.77 -36.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037906201.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.524 kcal (2) G-P(sol) polarization free energy of solvation -28.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds