Wall clock time and date at job start Mon Mar 30 2020 02:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86800 * 120.00239 * 2 1 4 4 H 1.48505 * 109.47154 * 239.99793 * 3 2 1 5 5 H 1.48510 * 109.47226 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47735 * 119.99678 * 3 2 1 7 7 C 1.38790 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00464 * 165.07775 * 7 2 1 9 9 N 1.36858 * 119.99689 * 345.07854 * 7 2 1 10 10 C 1.46911 * 120.52063 * 333.21701 * 9 7 2 11 11 C 1.53435 * 107.85564 * 224.78040 * 10 9 7 12 12 C 1.52862 * 108.82685 * 296.82825 * 11 10 9 13 13 C 1.50588 * 110.47091 * 51.16574 * 12 11 10 14 14 C 1.39105 * 118.95432 * 159.49465 * 13 12 11 15 15 N 1.39682 * 119.91686 * 359.84233 * 14 13 12 16 16 C 1.38859 * 120.16224 * 179.85011 * 14 13 12 17 17 C 1.38222 * 120.10346 * 359.97366 * 16 14 13 18 18 C 1.38020 * 120.00939 * 0.11618 * 17 16 14 19 19 C 1.38628 * 121.53304 * 339.47865 * 13 12 11 20 20 H 0.97003 * 119.99949 * 5.22710 * 1 2 3 21 21 H 1.09001 * 109.79805 * 105.17313 * 10 9 7 22 22 H 1.09001 * 109.79541 * 344.38058 * 10 9 7 23 23 H 1.09008 * 109.57763 * 56.62516 * 11 10 9 24 24 H 1.09002 * 109.58093 * 176.88969 * 11 10 9 25 25 H 1.08994 * 109.30757 * 171.47685 * 12 11 10 26 26 H 1.08998 * 109.29900 * 290.86634 * 12 11 10 27 27 H 0.96997 * 120.00455 * 359.97438 * 15 14 13 28 28 H 0.96999 * 119.99801 * 179.97438 * 15 14 13 29 29 H 1.07998 * 119.94359 * 179.97438 * 16 14 13 30 30 H 1.07997 * 119.98915 * 180.09835 * 17 16 14 31 31 H 1.08004 * 119.90890 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.1038 1.6963 -1.2125 5 1 1.2849 2.7465 -0.0006 6 1 3.1037 1.6965 1.2125 7 6 2.0099 -1.2019 0.0005 8 1 3.0625 -1.2179 -0.2403 9 7 1.3602 -2.3670 0.3063 10 6 0.1712 -2.3540 1.1691 11 6 0.3133 -3.4968 2.1831 12 6 0.3323 -4.8261 1.4287 13 6 1.3501 -4.7877 0.3195 14 6 1.8300 -5.9873 -0.1959 15 7 1.3687 -7.2010 0.3191 16 6 2.7667 -5.9812 -1.2211 17 6 3.2255 -4.7823 -1.7338 18 6 2.7545 -3.5888 -1.2253 19 6 1.8159 -3.5880 -0.1958 20 1 -0.4850 0.8366 -0.0765 21 1 -0.7242 -2.5048 0.5662 22 1 0.1065 -1.4009 1.6940 23 1 1.2438 -3.3787 2.7385 24 1 -0.5294 -3.4788 2.8742 25 1 0.5838 -5.6297 2.1208 26 1 -0.6545 -5.0145 1.0057 27 1 0.7148 -7.2067 1.0355 28 1 1.7023 -8.0382 -0.0398 29 1 3.1372 -6.9146 -1.6184 30 1 3.9527 -4.7797 -2.5321 31 1 3.1144 -2.6530 -1.6269 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037906201.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:10 Heat of formation + Delta-G solvation = 11.929034 kcal Electronic energy + Delta-G solvation = -14742.637603 eV Core-core repulsion = 12408.550254 eV Total energy + Delta-G solvation = -2334.087349 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.78356 -37.85497 -35.52314 -34.66527 -32.55241 -30.77308 -28.57378 -27.53133 -24.95298 -23.86100 -22.22773 -20.34940 -19.08517 -17.89808 -17.62137 -16.58470 -16.33144 -15.66697 -15.51589 -14.90536 -14.47714 -14.24314 -14.18181 -13.69747 -13.28219 -13.03139 -12.83419 -12.59936 -12.26836 -12.17420 -11.94064 -11.52224 -11.32401 -11.16461 -10.82245 -10.08641 -8.44901 -8.25959 -7.97944 -5.67842 0.99397 1.18512 1.40521 1.49381 1.51420 2.29377 2.96966 3.17059 3.40850 3.43179 4.11042 4.22926 4.32696 4.52967 4.67721 4.69862 4.91161 5.04464 5.05987 5.14911 5.21574 5.31776 5.40933 5.47325 5.51874 5.81154 5.93725 6.05533 6.18573 6.35110 6.80483 6.94568 7.27992 7.54504 7.88613 8.78694 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.038855 B = 0.010027 C = 0.008314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.456652 B = 2791.873218 C = 3367.203751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.020 4.020 3 Si 0.988 3.012 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.318 4.318 8 H 0.081 0.919 9 N -0.480 5.480 10 C 0.156 3.844 11 C -0.132 4.132 12 C -0.043 4.043 13 C -0.288 4.288 14 C 0.258 3.742 15 N -0.867 5.867 16 C -0.295 4.295 17 C -0.037 4.037 18 C -0.282 4.282 19 C 0.224 3.776 20 H 0.268 0.732 21 H 0.023 0.977 22 H 0.063 0.937 23 H 0.050 0.950 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.400 0.600 28 H 0.405 0.595 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 -9.647 2.463 10.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.220 4.220 3 Si 0.812 3.188 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.446 4.446 8 H 0.099 0.901 9 N -0.171 5.171 10 C 0.032 3.968 11 C -0.171 4.171 12 C -0.080 4.080 13 C -0.299 4.299 14 C 0.152 3.848 15 N -0.408 5.408 16 C -0.321 4.321 17 C -0.056 4.056 18 C -0.307 4.307 19 C 0.110 3.890 20 H 0.077 0.923 21 H 0.041 0.959 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.108 0.892 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.230 0.770 28 H 0.234 0.766 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.149 -9.180 2.628 9.618 hybrid contribution 0.127 0.968 -0.199 0.996 sum 1.276 -8.213 2.429 8.659 Atomic orbital electron populations 1.70113 1.07064 1.28298 1.49566 1.26140 0.96349 1.02526 0.96965 0.85050 0.77727 0.76936 0.79043 1.19488 1.20478 1.19441 1.19617 0.93866 0.84369 1.46774 0.90090 1.42808 1.27075 1.02733 1.44482 1.21164 0.86710 0.97875 0.91002 1.21921 1.01886 0.95517 0.97727 1.19902 0.96477 0.96992 0.94615 1.18708 1.12159 0.90554 1.08468 1.17355 0.90882 0.85652 0.90953 1.42331 1.50669 1.04257 1.43557 1.20222 1.08239 0.97956 1.05645 1.20676 0.96541 0.91357 0.97052 1.20491 1.08377 0.98008 1.03837 1.18032 0.93746 0.86110 0.91066 0.92280 0.95862 0.91858 0.93073 0.89151 0.90097 0.92541 0.77026 0.76589 0.85330 0.85426 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.51 11.14 21.65 0.24 -51.27 16 2 C -0.02 -1.09 4.97 84.86 0.42 -0.67 16 3 Si 0.99 43.05 29.58 68.60 2.03 45.08 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 7 C -0.32 -17.86 8.65 84.04 0.73 -17.13 16 8 H 0.08 4.53 6.88 -2.91 -0.02 4.51 16 9 N -0.48 -25.81 2.99 -509.93 -1.52 -27.33 16 10 C 0.16 7.71 4.96 86.45 0.43 8.14 16 11 C -0.13 -5.09 6.12 30.69 0.19 -4.91 16 12 C -0.04 -1.51 5.08 29.77 0.15 -1.36 16 13 C -0.29 -12.07 5.78 -19.60 -0.11 -12.18 16 14 C 0.26 9.19 6.73 38.25 0.26 9.45 16 15 N -0.87 -21.73 8.97 -51.28 -0.46 -22.19 16 16 C -0.30 -10.44 9.88 22.41 0.22 -10.22 16 17 C -0.04 -1.44 10.04 22.21 0.22 -1.21 16 18 C -0.28 -13.47 9.19 22.48 0.21 -13.26 16 19 C 0.22 11.15 6.32 38.25 0.24 11.39 16 20 H 0.27 14.33 8.32 -92.71 -0.77 13.56 16 21 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.06 3.35 6.45 -2.39 -0.02 3.33 16 23 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 24 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 25 H 0.08 2.31 6.93 -2.39 -0.02 2.30 16 26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.40 8.74 6.91 -92.71 -0.64 8.10 16 28 H 0.40 7.83 8.84 -92.71 -0.82 7.01 16 29 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 30 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 31 H 0.09 4.61 6.58 -2.91 -0.02 4.59 16 Total: -1.00 -63.99 251.31 2.94 -61.05 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: -0.31 Total: 26.60 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 2.95 Total: -31.95 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -1.74 Total: -100.79 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -63.99 2.94 -61.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037906201.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.983 kcal (2) G-P(sol) polarization free energy of solvation -63.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds