Wall clock time and date at job start Mon Mar 30 2020 02:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20762 * 120.00358 * 2 1 4 4 C 1.50712 * 119.99926 * 180.02562 * 2 1 3 5 5 H 1.09000 * 109.46889 * 35.00534 * 4 2 1 6 6 C 1.52996 * 109.46970 * 155.00170 * 4 2 1 7 7 C 1.50702 * 109.47159 * 294.99838 * 6 4 2 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 4 9 9 C 1.37884 * 119.99942 * 179.72211 * 7 6 4 10 10 N 1.31514 * 119.99985 * 180.27663 * 9 7 6 11 11 Si 1.86800 * 119.99777 * 0.28166 * 9 7 6 12 12 H 1.48498 * 109.47109 * 89.99834 * 11 9 7 13 13 H 1.48507 * 109.46754 * 209.99574 * 11 9 7 14 14 H 1.48498 * 109.47278 * 329.99405 * 11 9 7 15 15 C 1.50695 * 109.47025 * 275.00248 * 4 2 1 16 16 C 1.38235 * 119.99964 * 299.72293 * 15 4 2 17 17 C 1.38235 * 119.99895 * 179.78918 * 16 15 4 18 18 C 1.38238 * 119.99804 * 0.44177 * 17 16 15 19 19 C 1.38229 * 120.00297 * 359.81509 * 18 17 16 20 20 C 1.38236 * 120.00001 * 359.97341 * 19 18 17 21 21 H 1.09007 * 109.47121 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47576 * 299.99757 * 1 2 3 23 23 H 1.09005 * 109.46671 * 60.00080 * 1 2 3 24 24 H 1.09004 * 109.47066 * 175.00041 * 6 4 2 25 25 H 1.08994 * 109.47405 * 54.99871 * 6 4 2 26 26 H 0.96996 * 119.99730 * 180.02562 * 10 9 7 27 27 H 1.08001 * 120.00254 * 0.02562 * 16 15 4 28 28 H 1.08002 * 120.00119 * 180.28150 * 17 16 15 29 29 H 1.08000 * 119.99603 * 179.83542 * 18 17 16 30 30 H 1.07995 * 120.00179 * 179.97438 * 19 18 17 31 31 H 1.07996 * 120.00408 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 -0.0006 5 1 1.7131 -2.0404 -0.5904 6 6 3.6477 -1.0929 -0.6101 7 6 3.5059 -0.7138 -2.0617 8 1 2.5245 -0.6320 -2.5052 9 6 4.6289 -0.4652 -2.8222 10 7 4.5049 -0.1291 -4.0876 11 14 6.3263 -0.6061 -2.0551 12 1 6.8284 -1.9943 -2.2159 13 1 7.2540 0.3372 -2.7295 14 1 6.2457 -0.2731 -0.6101 15 6 2.4043 -1.8028 1.4146 16 6 3.0725 -1.0373 2.3518 17 6 3.2007 -1.4917 3.6510 18 6 2.6686 -2.7159 4.0107 19 6 2.0050 -3.4838 3.0722 20 6 1.8731 -3.0274 1.7740 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8901 24 1 4.2246 -2.0142 -0.5299 25 1 4.1615 -0.2947 -0.0746 26 1 5.2950 0.0454 -4.6226 27 1 3.4911 -0.0824 2.0700 28 1 3.7188 -0.8916 4.3844 29 1 2.7710 -3.0721 5.0251 30 1 1.5897 -4.4403 3.3531 31 1 1.3543 -3.6271 1.0408 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039238485.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:59 Heat of formation + Delta-G solvation = -24.985711 kcal Electronic energy + Delta-G solvation = -14317.267539 eV Core-core repulsion = 11949.286695 eV Total energy + Delta-G solvation = -2367.980843 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.64203 -38.12587 -34.03393 -32.24455 -30.69056 -29.69497 -29.32460 -25.53904 -22.44278 -21.67981 -21.27344 -18.48001 -17.06156 -16.28654 -15.47533 -15.05619 -14.56145 -14.27134 -14.12897 -13.75197 -13.16159 -12.80763 -12.52822 -12.45692 -12.15163 -11.61023 -11.42052 -11.25086 -11.07493 -10.73964 -10.43843 -9.96935 -9.73913 -9.33813 -8.95248 -8.70310 -8.50526 -8.23529 -6.01962 -3.99479 1.56759 1.61476 2.74700 3.33779 3.41141 3.46945 4.00080 4.48714 4.73270 5.09799 5.13082 5.21669 5.33686 5.38354 5.52003 5.70503 5.74669 5.79090 5.89626 6.01236 6.17932 6.26042 6.34134 6.63404 6.65739 6.70899 6.91358 7.14603 7.22809 7.37838 7.77749 8.29646 8.50183 8.98793 9.60271 11.11548 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.028045 B = 0.009821 C = 0.008319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.139094 B = 2850.369756 C = 3364.842630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.372 3.628 3 O -0.442 6.442 4 C -0.089 4.089 5 H 0.096 0.904 6 C 0.002 3.998 7 C -0.516 4.516 8 H 0.069 0.931 9 C 0.070 3.930 10 N -0.903 5.903 11 Si 0.877 3.123 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.264 1.264 15 C -0.059 4.059 16 C -0.113 4.113 17 C -0.121 4.121 18 C -0.132 4.132 19 C -0.123 4.123 20 C -0.116 4.116 21 H 0.075 0.925 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.019 0.981 25 H 0.030 0.970 26 H 0.263 0.737 27 H 0.125 0.875 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.278 -5.314 13.950 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.245 3.755 3 O -0.313 6.313 4 C -0.108 4.108 5 H 0.114 0.886 6 C -0.035 4.035 7 C -0.554 4.554 8 H 0.087 0.913 9 C -0.131 4.131 10 N -0.542 5.542 11 Si 0.705 3.295 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.189 1.189 15 C -0.059 4.059 16 C -0.131 4.131 17 C -0.139 4.139 18 C -0.150 4.150 19 C -0.141 4.141 20 C -0.134 4.134 21 H 0.094 0.906 22 H 0.100 0.900 23 H 0.106 0.894 24 H 0.037 0.963 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.143 0.857 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.849 -4.692 13.785 15.693 hybrid contribution 0.903 -0.191 0.158 0.937 sum -4.946 -4.883 13.943 15.579 Atomic orbital electron populations 1.22272 0.95808 1.03890 1.03871 1.24237 0.90800 0.90274 0.70151 1.90355 1.71721 1.34779 1.34494 1.20844 1.01245 0.96644 0.92036 0.88579 1.19560 0.90015 0.96978 0.96926 1.20989 0.94837 1.46834 0.92691 0.91256 1.24940 0.99111 0.94425 0.94651 1.69903 1.29740 1.47605 1.06904 0.86809 0.84466 0.78023 0.80250 1.20310 1.21326 1.18873 1.19820 0.96741 0.94507 0.94810 1.21215 0.98444 1.00501 0.92944 1.21109 1.00121 0.96421 0.96208 1.21059 0.99552 0.95202 0.99232 1.21066 0.99894 0.99621 0.93509 1.21110 1.00232 0.95778 0.96294 0.90593 0.89995 0.89374 0.96306 0.95222 0.92756 0.85682 0.86401 0.86599 0.86381 0.85880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.94 10.33 36.00 0.37 -2.56 16 2 C 0.37 7.32 5.41 -29.03 -0.16 7.16 16 3 O -0.44 -10.40 16.53 6.00 0.10 -10.30 16 4 C -0.09 -1.74 2.17 -92.92 -0.20 -1.94 16 5 H 0.10 1.75 7.87 -51.93 -0.41 1.35 16 6 C 0.00 0.06 2.94 -27.88 -0.08 -0.02 16 7 C -0.52 -14.85 8.98 -34.44 -0.31 -15.16 16 8 H 0.07 2.12 7.85 -52.49 -0.41 1.71 16 9 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 10 N -0.90 -28.33 13.96 55.43 0.77 -27.56 16 11 Si 0.88 22.47 27.47 -169.99 -4.67 17.80 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.26 -6.60 6.54 56.52 0.37 -6.24 16 15 C -0.06 -1.00 4.77 -104.62 -0.50 -1.49 16 16 C -0.11 -1.90 8.87 -39.58 -0.35 -2.25 16 17 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 18 C -0.13 -1.65 10.05 -39.58 -0.40 -2.05 16 19 C -0.12 -1.54 10.05 -39.59 -0.40 -1.94 16 20 C -0.12 -1.66 9.67 -39.58 -0.38 -2.04 16 21 H 0.08 0.93 8.00 -51.93 -0.42 0.51 16 22 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 24 H 0.02 0.45 7.58 -51.93 -0.39 0.06 16 25 H 0.03 0.76 6.15 -51.93 -0.32 0.44 16 26 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 27 H 0.13 2.27 7.62 -52.49 -0.40 1.87 16 28 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.12 1.53 7.95 -52.49 -0.42 1.11 16 LS Contribution 269.25 15.07 4.06 4.06 Total: -1.00 -33.03 269.25 -6.69 -39.72 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -4.05 Total: -1.32 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -2.90 Total: -22.39 kcal Atomic # 7 Polarization: -28.33 SS G_CDS: 0.77 Total: -27.56 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.10 Total: -10.30 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.67 Total: 17.80 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -33.03 -6.69 -39.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039238485.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.734 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds