Wall clock time and date at job start Mon Mar 30 2020 02:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20762 * 120.00358 * 2 1 4 4 C 1.50712 * 119.99926 * 180.02562 * 2 1 3 5 5 H 1.09000 * 109.46889 * 35.00534 * 4 2 1 6 6 C 1.52996 * 109.46970 * 155.00170 * 4 2 1 7 7 C 1.50702 * 109.47159 * 294.99838 * 6 4 2 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 4 9 9 C 1.37884 * 119.99942 * 179.72211 * 7 6 4 10 10 N 1.31514 * 119.99985 * 180.27663 * 9 7 6 11 11 Si 1.86800 * 119.99777 * 0.28166 * 9 7 6 12 12 H 1.48498 * 109.47109 * 89.99834 * 11 9 7 13 13 H 1.48507 * 109.46754 * 209.99574 * 11 9 7 14 14 H 1.48498 * 109.47278 * 329.99405 * 11 9 7 15 15 C 1.50695 * 109.47025 * 275.00248 * 4 2 1 16 16 C 1.38235 * 119.99964 * 299.72293 * 15 4 2 17 17 C 1.38235 * 119.99895 * 179.78918 * 16 15 4 18 18 C 1.38238 * 119.99804 * 0.44177 * 17 16 15 19 19 C 1.38229 * 120.00297 * 359.81509 * 18 17 16 20 20 C 1.38236 * 120.00001 * 359.97341 * 19 18 17 21 21 H 1.09007 * 109.47121 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47576 * 299.99757 * 1 2 3 23 23 H 1.09005 * 109.46671 * 60.00080 * 1 2 3 24 24 H 1.09004 * 109.47066 * 175.00041 * 6 4 2 25 25 H 1.08994 * 109.47405 * 54.99871 * 6 4 2 26 26 H 0.96996 * 119.99730 * 180.02562 * 10 9 7 27 27 H 1.08001 * 120.00254 * 0.02562 * 16 15 4 28 28 H 1.08002 * 120.00119 * 180.28150 * 17 16 15 29 29 H 1.08000 * 119.99603 * 179.83542 * 18 17 16 30 30 H 1.07995 * 120.00179 * 179.97438 * 19 18 17 31 31 H 1.07996 * 120.00408 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 -0.0006 5 1 1.7131 -2.0404 -0.5904 6 6 3.6477 -1.0929 -0.6101 7 6 3.5059 -0.7138 -2.0617 8 1 2.5245 -0.6320 -2.5052 9 6 4.6289 -0.4652 -2.8222 10 7 4.5049 -0.1291 -4.0876 11 14 6.3263 -0.6061 -2.0551 12 1 6.8284 -1.9943 -2.2159 13 1 7.2540 0.3372 -2.7295 14 1 6.2457 -0.2731 -0.6101 15 6 2.4043 -1.8028 1.4146 16 6 3.0725 -1.0373 2.3518 17 6 3.2007 -1.4917 3.6510 18 6 2.6686 -2.7159 4.0107 19 6 2.0050 -3.4838 3.0722 20 6 1.8731 -3.0274 1.7740 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8901 24 1 4.2246 -2.0142 -0.5299 25 1 4.1615 -0.2947 -0.0746 26 1 5.2950 0.0454 -4.6226 27 1 3.4911 -0.0824 2.0700 28 1 3.7188 -0.8916 4.3844 29 1 2.7710 -3.0721 5.0251 30 1 1.5897 -4.4403 3.3531 31 1 1.3543 -3.6271 1.0408 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039238485.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:59 Heat of formation + Delta-G solvation = -45.214385 kcal Electronic energy + Delta-G solvation = -14318.144720 eV Core-core repulsion = 11949.286695 eV Total energy + Delta-G solvation = -2368.858025 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.03752 -39.46387 -35.80718 -34.21184 -31.77571 -31.09617 -30.87927 -27.24422 -23.74146 -23.26092 -22.64277 -19.98044 -19.10293 -17.58065 -16.95419 -16.58174 -16.21396 -15.78157 -15.47204 -15.26791 -14.68011 -14.25933 -14.10046 -13.75889 -13.61170 -13.08333 -13.04164 -12.87461 -12.45806 -12.35865 -11.97149 -11.76638 -11.59946 -11.39731 -10.81238 -10.48811 -9.78018 -9.48555 -8.32521 -6.34243 0.45242 0.53848 1.22096 1.28365 1.31770 1.43473 2.32118 2.89442 3.03188 3.34587 3.90274 4.01748 4.21138 4.22947 4.32794 4.40347 4.61115 4.66694 4.68567 4.77540 4.85566 5.04296 5.17037 5.20308 5.24558 5.37479 5.55861 5.64827 5.66405 5.79983 6.16615 6.19402 6.68406 6.78098 7.28969 8.84197 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.028045 B = 0.009821 C = 0.008319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.139094 B = 2850.369756 C = 3364.842630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.364 3.636 3 O -0.495 6.495 4 C -0.088 4.088 5 H 0.108 0.892 6 C 0.009 3.991 7 C -0.518 4.518 8 H 0.037 0.963 9 C 0.007 3.993 10 N -0.948 5.948 11 Si 0.941 3.059 12 H -0.259 1.259 13 H -0.283 1.283 14 H -0.260 1.260 15 C -0.080 4.080 16 C -0.139 4.139 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.116 4.116 20 C -0.117 4.117 21 H 0.105 0.895 22 H 0.103 0.897 23 H 0.090 0.910 24 H 0.022 0.978 25 H 0.010 0.990 26 H 0.266 0.734 27 H 0.095 0.905 28 H 0.136 0.864 29 H 0.152 0.848 30 H 0.155 0.845 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.755 -7.512 16.578 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.242 3.758 3 O -0.371 6.371 4 C -0.107 4.107 5 H 0.126 0.874 6 C -0.029 4.029 7 C -0.556 4.556 8 H 0.055 0.945 9 C -0.189 4.189 10 N -0.589 5.589 11 Si 0.765 3.235 12 H -0.183 1.183 13 H -0.208 1.208 14 H -0.184 1.184 15 C -0.080 4.080 16 C -0.157 4.157 17 C -0.142 4.142 18 C -0.141 4.141 19 C -0.133 4.133 20 C -0.135 4.135 21 H 0.123 0.877 22 H 0.122 0.878 23 H 0.108 0.892 24 H 0.040 0.960 25 H 0.029 0.971 26 H 0.075 0.925 27 H 0.113 0.887 28 H 0.154 0.846 29 H 0.170 0.830 30 H 0.173 0.827 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.347 -6.916 16.425 18.918 hybrid contribution 0.969 0.459 -0.613 1.235 sum -5.378 -6.457 15.812 17.906 Atomic orbital electron populations 1.22257 0.91537 1.06251 1.04920 1.25003 0.93340 0.89495 0.68001 1.90334 1.73262 1.36266 1.37241 1.20745 0.98432 0.97304 0.94198 0.87362 1.19390 0.93333 0.96044 0.94094 1.21322 0.93449 1.45948 0.94919 0.94498 1.25874 1.03583 0.94363 0.95128 1.70042 1.31040 1.49342 1.08465 0.85786 0.79349 0.78963 0.79383 1.18330 1.20838 1.18383 1.19610 0.99209 0.96163 0.93028 1.21146 0.99952 0.99924 0.94700 1.21352 1.00180 0.97517 0.95186 1.21508 0.97659 0.93981 1.00941 1.21505 0.98671 1.00756 0.92403 1.21344 0.99774 0.94545 0.97842 0.87651 0.87812 0.89155 0.95950 0.97131 0.92546 0.88666 0.84577 0.83041 0.82737 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.39 10.33 71.23 0.74 -4.66 16 2 C 0.36 14.61 5.41 29.10 0.16 14.77 16 3 O -0.50 -24.48 16.53 -1.46 -0.02 -24.50 16 4 C -0.09 -3.47 2.17 -12.29 -0.03 -3.50 16 5 H 0.11 3.91 7.87 -2.39 -0.02 3.89 16 6 C 0.01 0.44 2.94 29.85 0.09 0.52 16 7 C -0.52 -30.93 8.98 25.60 0.23 -30.70 16 8 H 0.04 2.36 7.85 -2.91 -0.02 2.34 16 9 C 0.01 0.45 5.47 84.66 0.46 0.91 16 10 N -0.95 -61.37 13.96 21.45 0.30 -61.07 16 11 Si 0.94 47.14 27.47 68.60 1.88 49.02 16 12 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 13 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 14 H -0.26 -12.68 6.54 99.48 0.65 -12.03 16 15 C -0.08 -2.63 4.77 -19.87 -0.09 -2.73 16 16 C -0.14 -4.63 8.87 22.27 0.20 -4.43 16 17 C -0.12 -3.18 10.05 22.27 0.22 -2.96 16 18 C -0.12 -2.51 10.05 22.27 0.22 -2.29 16 19 C -0.12 -2.34 10.05 22.27 0.22 -2.12 16 20 C -0.12 -2.98 9.67 22.27 0.22 -2.76 16 21 H 0.10 2.29 8.00 -2.38 -0.02 2.27 16 22 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 23 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 24 H 0.02 1.08 7.58 -2.38 -0.02 1.06 16 25 H 0.01 0.56 6.15 -2.39 -0.01 0.54 16 26 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 27 H 0.10 3.65 7.62 -2.91 -0.02 3.63 16 28 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 30 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 31 H 0.14 2.99 7.95 -2.91 -0.02 2.97 16 Total: -1.00 -75.05 269.25 5.84 -69.21 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 1.05 Total: 7.28 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 2.64 Total: -39.94 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.30 Total: -61.07 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.02 Total: -24.50 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.88 Total: 49.02 kcal Total: -75.05 5.84 -69.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039238485.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.997 kcal (2) G-P(sol) polarization free energy of solvation -75.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds