Wall clock time and date at job start Mon Mar 30 2020 02:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20758 * 119.99944 * 2 1 4 4 C 1.50703 * 120.00118 * 179.72775 * 2 1 3 5 5 H 1.09000 * 109.47164 * 33.16639 * 4 2 1 6 6 C 1.53004 * 109.46857 * 273.17196 * 4 2 1 7 7 C 1.50698 * 109.47081 * 174.42280 * 6 4 2 8 8 H 1.07995 * 120.00091 * 354.91046 * 7 6 4 9 9 C 1.37884 * 120.00060 * 174.90571 * 7 6 4 10 10 N 1.31511 * 119.99719 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00087 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46852 * 60.00185 * 11 9 7 13 13 H 1.48498 * 109.47194 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47306 * 300.00373 * 11 9 7 15 15 C 1.50690 * 109.47369 * 153.17145 * 4 2 1 16 16 C 1.38233 * 120.00204 * 59.72271 * 15 4 2 17 17 C 1.38237 * 120.00201 * 179.78399 * 16 15 4 18 18 C 1.38236 * 119.99953 * 0.45366 * 17 16 15 19 19 C 1.38238 * 119.99748 * 359.79805 * 18 17 16 20 20 C 1.38233 * 120.00098 * 359.97438 * 19 18 17 21 21 H 1.09002 * 109.47315 * 95.01061 * 1 2 3 22 22 H 1.09004 * 109.47243 * 215.00947 * 1 2 3 23 23 H 1.08998 * 109.46990 * 335.00910 * 1 2 3 24 24 H 1.09004 * 109.47064 * 294.42587 * 6 4 2 25 25 H 1.08999 * 109.47317 * 54.42644 * 6 4 2 26 26 H 0.97003 * 120.00198 * 179.97438 * 10 9 7 27 27 H 1.08000 * 119.99804 * 0.02562 * 16 15 4 28 28 H 1.07998 * 120.00081 * 180.27084 * 17 16 15 29 29 H 1.07996 * 120.00243 * 179.83348 * 18 17 16 30 30 H 1.08000 * 119.99763 * 180.02562 * 19 18 17 31 31 H 1.07996 * 120.00048 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0062 5 1 1.6972 -2.0525 -0.5525 6 6 2.4464 -1.7798 1.4488 7 6 3.0772 -3.1484 1.4500 8 1 3.2458 -3.6661 0.5173 9 6 3.4393 -3.7396 2.6418 10 7 3.2336 -3.1093 3.7776 11 14 4.2219 -5.4357 2.6432 12 1 5.4848 -5.3987 1.8629 13 1 4.5157 -5.8441 4.0404 14 1 3.2880 -6.4123 2.0274 15 6 3.6096 -1.1093 -0.6359 16 6 4.5035 -0.1997 -0.1026 17 6 5.7428 -0.0233 -0.6891 18 6 6.0847 -0.7497 -1.8143 19 6 5.1888 -1.6556 -2.3507 20 6 3.9513 -1.8354 -1.7615 21 1 -0.3634 -0.0898 -1.0237 22 1 -0.3634 -0.8417 0.5896 23 1 -0.3633 0.9314 0.4342 24 1 3.0925 -1.0814 1.9807 25 1 1.4764 -1.8265 1.9438 26 1 3.4880 -3.5254 4.6162 27 1 4.2351 0.3704 0.7745 28 1 6.4428 0.6842 -0.2698 29 1 7.0518 -0.6100 -2.2741 30 1 5.4560 -2.2235 -3.2297 31 1 3.2512 -2.5428 -2.1808 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039238486.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:01 Heat of formation + Delta-G solvation = -29.308368 kcal Electronic energy + Delta-G solvation = -14382.792224 eV Core-core repulsion = 12014.623936 eV Total energy + Delta-G solvation = -2368.168288 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.58450 -37.88481 -34.15552 -32.07532 -30.27881 -29.99097 -28.40787 -25.46122 -22.38861 -21.77247 -21.02839 -18.56675 -16.48893 -16.25432 -15.10614 -15.00123 -14.74843 -14.14726 -14.00987 -13.73293 -12.86911 -12.52820 -12.38138 -12.25517 -11.81644 -11.73273 -11.36238 -11.08578 -10.86124 -10.68322 -10.46233 -10.05151 -9.71757 -9.41908 -8.82898 -8.41891 -8.23257 -7.94207 -6.05122 -4.07338 2.01628 2.07779 2.53277 3.31772 3.36285 3.39346 4.37652 4.44207 4.75904 5.31088 5.41204 5.45582 5.49187 5.54980 5.66548 5.72886 5.91540 6.02965 6.16251 6.24617 6.32246 6.49307 6.70528 6.72275 7.03672 7.11038 7.33837 7.45217 7.58540 7.67640 7.90779 8.07812 8.29286 8.96211 9.56529 11.06007 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.011727 C = 0.008713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.422652 B = 2387.082205 C = 3212.692108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.362 3.638 3 O -0.468 6.468 4 C -0.099 4.099 5 H 0.091 0.909 6 C 0.043 3.957 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.060 3.940 10 N -0.894 5.894 11 Si 0.892 3.108 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.276 1.276 15 C -0.036 4.036 16 C -0.080 4.080 17 C -0.128 4.128 18 C -0.136 4.136 19 C -0.131 4.131 20 C -0.117 4.117 21 H 0.089 0.911 22 H 0.090 0.910 23 H 0.077 0.923 24 H 0.029 0.971 25 H 0.021 0.979 26 H 0.262 0.738 27 H 0.121 0.879 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.155 3.353 -9.105 9.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.239 3.761 3 O -0.342 6.342 4 C -0.118 4.118 5 H 0.110 0.890 6 C 0.006 3.994 7 C -0.552 4.552 8 H 0.076 0.924 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.720 3.280 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.202 1.202 15 C -0.037 4.037 16 C -0.098 4.098 17 C -0.146 4.146 18 C -0.154 4.154 19 C -0.149 4.149 20 C -0.135 4.135 21 H 0.107 0.893 22 H 0.108 0.892 23 H 0.096 0.904 24 H 0.047 0.953 25 H 0.040 0.960 26 H 0.072 0.928 27 H 0.139 0.861 28 H 0.131 0.869 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.817 3.891 -8.905 9.752 hybrid contribution 0.434 -1.158 0.177 1.249 sum -0.383 2.733 -8.727 9.153 Atomic orbital electron populations 1.22293 0.95167 1.04616 1.03908 1.24811 0.91634 0.90631 0.69056 1.90329 1.72005 1.35293 1.36585 1.21032 0.92766 0.95193 1.02792 0.89041 1.19083 0.97688 0.96990 0.85682 1.21042 1.40295 1.01125 0.92712 0.92374 1.24967 0.95768 0.97823 0.95592 1.69941 1.47762 1.38067 0.97563 0.86652 0.79995 0.84422 0.76976 1.20173 1.21301 1.20176 1.19472 0.95426 0.94973 0.93783 1.20999 0.92749 0.96984 0.99071 1.21040 0.96741 1.00231 0.96607 1.20942 0.99081 0.98045 0.97296 1.20926 0.94465 0.99261 1.00240 1.20957 0.96910 0.99541 0.96125 0.89293 0.89165 0.90433 0.95257 0.96050 0.92841 0.86091 0.86894 0.87118 0.86978 0.86694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.79 10.24 36.00 0.37 -2.42 16 2 C 0.36 6.63 6.34 -29.03 -0.18 6.45 16 3 O -0.47 -9.70 15.28 6.00 0.09 -9.61 16 4 C -0.10 -1.98 2.25 -92.93 -0.21 -2.19 16 5 H 0.09 1.67 7.87 -51.93 -0.41 1.26 16 6 C 0.04 1.05 4.33 -27.88 -0.12 0.93 16 7 C -0.51 -13.89 8.58 -34.44 -0.30 -14.19 16 8 H 0.06 1.54 7.71 -52.49 -0.40 1.13 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 11 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 C -0.04 -0.75 4.09 -104.63 -0.43 -1.17 16 16 C -0.08 -1.66 7.85 -39.58 -0.31 -1.97 16 17 C -0.13 -2.33 10.05 -39.58 -0.40 -2.72 16 18 C -0.14 -2.25 10.05 -39.58 -0.40 -2.65 16 19 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 20 C -0.12 -2.15 9.67 -39.58 -0.38 -2.54 16 21 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 23 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.03 0.80 7.22 -51.93 -0.38 0.42 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.12 2.63 6.81 -52.49 -0.36 2.27 16 28 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.12 1.87 7.95 -52.49 -0.42 1.45 16 LS Contribution 270.97 15.07 4.08 4.08 Total: -1.00 -30.73 270.97 -7.02 -37.75 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -4.06 Total: 0.31 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -2.85 Total: -23.47 kcal Atomic # 7 Polarization: -26.24 SS G_CDS: 0.74 Total: -25.50 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.73 -7.02 -37.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039238486.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.444 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds