Wall clock time and date at job start Mon Mar 30 2020 02:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20758 * 119.99944 * 2 1 4 4 C 1.50703 * 120.00118 * 179.72775 * 2 1 3 5 5 H 1.09000 * 109.47164 * 33.16639 * 4 2 1 6 6 C 1.53004 * 109.46857 * 273.17196 * 4 2 1 7 7 C 1.50698 * 109.47081 * 174.42280 * 6 4 2 8 8 H 1.07995 * 120.00091 * 354.91046 * 7 6 4 9 9 C 1.37884 * 120.00060 * 174.90571 * 7 6 4 10 10 N 1.31511 * 119.99719 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00087 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46852 * 60.00185 * 11 9 7 13 13 H 1.48498 * 109.47194 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47306 * 300.00373 * 11 9 7 15 15 C 1.50690 * 109.47369 * 153.17145 * 4 2 1 16 16 C 1.38233 * 120.00204 * 59.72271 * 15 4 2 17 17 C 1.38237 * 120.00201 * 179.78399 * 16 15 4 18 18 C 1.38236 * 119.99953 * 0.45366 * 17 16 15 19 19 C 1.38238 * 119.99748 * 359.79805 * 18 17 16 20 20 C 1.38233 * 120.00098 * 359.97438 * 19 18 17 21 21 H 1.09002 * 109.47315 * 95.01061 * 1 2 3 22 22 H 1.09004 * 109.47243 * 215.00947 * 1 2 3 23 23 H 1.08998 * 109.46990 * 335.00910 * 1 2 3 24 24 H 1.09004 * 109.47064 * 294.42587 * 6 4 2 25 25 H 1.08999 * 109.47317 * 54.42644 * 6 4 2 26 26 H 0.97003 * 120.00198 * 179.97438 * 10 9 7 27 27 H 1.08000 * 119.99804 * 0.02562 * 16 15 4 28 28 H 1.07998 * 120.00081 * 180.27084 * 17 16 15 29 29 H 1.07996 * 120.00243 * 179.83348 * 18 17 16 30 30 H 1.08000 * 119.99763 * 180.02562 * 19 18 17 31 31 H 1.07996 * 120.00048 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0062 5 1 1.6972 -2.0525 -0.5525 6 6 2.4464 -1.7798 1.4488 7 6 3.0772 -3.1484 1.4500 8 1 3.2458 -3.6661 0.5173 9 6 3.4393 -3.7396 2.6418 10 7 3.2336 -3.1093 3.7776 11 14 4.2219 -5.4357 2.6432 12 1 5.4848 -5.3987 1.8629 13 1 4.5157 -5.8441 4.0404 14 1 3.2880 -6.4123 2.0274 15 6 3.6096 -1.1093 -0.6359 16 6 4.5035 -0.1997 -0.1026 17 6 5.7428 -0.0233 -0.6891 18 6 6.0847 -0.7497 -1.8143 19 6 5.1888 -1.6556 -2.3507 20 6 3.9513 -1.8354 -1.7615 21 1 -0.3634 -0.0898 -1.0237 22 1 -0.3634 -0.8417 0.5896 23 1 -0.3633 0.9314 0.4342 24 1 3.0925 -1.0814 1.9807 25 1 1.4764 -1.8265 1.9438 26 1 3.4880 -3.5254 4.6162 27 1 4.2351 0.3704 0.7745 28 1 6.4428 0.6842 -0.2698 29 1 7.0518 -0.6100 -2.2741 30 1 5.4560 -2.2235 -3.2297 31 1 3.2512 -2.5428 -2.1808 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039238486.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:00 Heat of formation + Delta-G solvation = -46.319387 kcal Electronic energy + Delta-G solvation = -14383.529877 eV Core-core repulsion = 12014.623936 eV Total energy + Delta-G solvation = -2368.905941 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.07480 -39.31246 -35.96627 -33.97679 -31.67171 -31.28056 -30.09042 -27.23802 -24.15635 -23.27814 -22.47704 -20.06300 -18.50864 -17.68272 -16.65638 -16.62908 -16.41802 -15.70800 -15.42132 -15.17604 -14.41099 -14.25484 -14.02787 -13.71228 -13.15968 -13.09195 -12.94484 -12.86511 -12.58138 -12.45791 -12.03877 -11.65015 -11.53577 -11.38775 -10.55300 -10.40356 -9.65054 -9.39370 -8.18171 -6.26909 0.60797 0.65793 1.07806 1.40804 1.43401 1.50506 2.42018 2.98639 3.16876 3.37073 3.95476 4.08710 4.27012 4.28315 4.36571 4.48170 4.67063 4.72349 4.77411 4.80088 4.88250 5.14907 5.23192 5.28108 5.42437 5.51882 5.68038 5.71093 5.78766 5.93116 6.20215 6.27694 6.63594 6.85343 7.40846 8.93430 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.011727 C = 0.008713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.422652 B = 2387.082205 C = 3212.692108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.359 3.641 3 O -0.498 6.498 4 C -0.097 4.097 5 H 0.112 0.888 6 C 0.052 3.948 7 C -0.520 4.520 8 H 0.064 0.936 9 C 0.003 3.997 10 N -0.934 5.934 11 Si 0.957 3.043 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.261 1.261 15 C -0.063 4.063 16 C -0.112 4.112 17 C -0.139 4.139 18 C -0.133 4.133 19 C -0.128 4.128 20 C -0.128 4.128 21 H 0.123 0.877 22 H 0.097 0.903 23 H 0.086 0.914 24 H -0.011 1.011 25 H 0.009 0.991 26 H 0.262 0.738 27 H 0.091 0.909 28 H 0.130 0.870 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.902 2.028 -11.356 11.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.238 3.762 3 O -0.375 6.375 4 C -0.116 4.116 5 H 0.130 0.870 6 C 0.015 3.985 7 C -0.558 4.558 8 H 0.083 0.917 9 C -0.195 4.195 10 N -0.574 5.574 11 Si 0.782 3.218 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.185 1.185 15 C -0.063 4.063 16 C -0.130 4.130 17 C -0.157 4.157 18 C -0.150 4.150 19 C -0.145 4.145 20 C -0.146 4.146 21 H 0.141 0.859 22 H 0.115 0.885 23 H 0.105 0.895 24 H 0.007 0.993 25 H 0.027 0.973 26 H 0.071 0.929 27 H 0.109 0.891 28 H 0.148 0.852 29 H 0.166 0.834 30 H 0.168 0.832 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.579 2.559 -11.171 11.475 hybrid contribution 0.391 -0.699 0.844 1.164 sum -0.188 1.860 -10.327 10.495 Atomic orbital electron populations 1.22283 0.91077 1.05410 1.06251 1.25235 0.93783 0.89351 0.67829 1.90320 1.73161 1.35966 1.38032 1.20946 0.93926 0.96834 0.99852 0.87000 1.18830 0.95775 0.95468 0.88462 1.21416 1.39630 1.01883 0.92848 0.91741 1.25853 0.96506 1.01787 0.95313 1.70081 1.49278 1.39886 0.98178 0.85612 0.79192 0.80002 0.76976 1.19912 1.21245 1.18531 1.19637 0.95500 0.95983 0.95227 1.20978 0.94650 0.98170 0.99233 1.21333 0.96054 1.00982 0.97361 1.21390 1.00577 0.96865 0.96216 1.21413 0.93476 0.98805 1.00844 1.21285 0.98289 0.99496 0.95565 0.85876 0.88476 0.89531 0.99275 0.97309 0.92929 0.89095 0.85222 0.83446 0.83217 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.00 10.24 71.24 0.73 -4.27 16 2 C 0.36 13.25 6.34 29.10 0.18 13.43 16 3 O -0.50 -21.33 15.28 -1.44 -0.02 -21.35 16 4 C -0.10 -3.91 2.25 -12.29 -0.03 -3.94 16 5 H 0.11 3.96 7.87 -2.39 -0.02 3.94 16 6 C 0.05 2.64 4.33 29.85 0.13 2.77 16 7 C -0.52 -28.37 8.58 25.60 0.22 -28.15 16 8 H 0.06 3.36 7.71 -2.91 -0.02 3.34 16 9 C 0.00 0.17 5.46 84.66 0.46 0.63 16 10 N -0.93 -56.23 13.29 21.45 0.28 -55.94 16 11 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 13 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 14 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 15 C -0.06 -2.60 4.09 -19.87 -0.08 -2.68 16 16 C -0.11 -4.81 7.85 22.27 0.17 -4.63 16 17 C -0.14 -5.00 10.05 22.27 0.22 -4.78 16 18 C -0.13 -4.04 10.05 22.27 0.22 -3.81 16 19 C -0.13 -3.84 10.05 22.27 0.22 -3.61 16 20 C -0.13 -4.46 9.67 22.27 0.22 -4.24 16 21 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 22 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 23 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 24 H -0.01 -0.65 7.22 -2.39 -0.02 -0.67 16 25 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 27 H 0.09 4.31 6.81 -2.91 -0.02 4.29 16 28 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 29 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 30 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 31 H 0.14 4.01 7.95 -2.91 -0.02 3.99 16 Total: -1.00 -68.20 270.97 6.07 -62.13 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 1.10 Total: 12.54 kcal Atomic # 6 Polarization: -45.96 SS G_CDS: 2.68 Total: -43.29 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.28 Total: -55.94 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.02 Total: -21.35 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -68.20 6.07 -62.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039238486.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.814 kcal (2) G-P(sol) polarization free energy of solvation -68.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds