Wall clock time and date at job start Mon Mar 30 2020 02:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35903 * 117.00306 * 2 1 4 4 C 1.38754 * 120.08691 * 359.97438 * 3 2 1 5 5 C 1.37999 * 119.87387 * 180.02562 * 4 3 2 6 6 C 1.38546 * 120.29390 * 0.02617 * 5 4 3 7 7 C 1.38256 * 119.93746 * 359.97394 * 6 5 4 8 8 C 1.38411 * 119.90421 * 0.02562 * 7 6 5 9 9 C 1.51688 * 109.83778 * 180.16367 * 7 6 5 10 10 H 1.08997 * 110.49771 * 135.87208 * 9 7 6 11 11 C 1.50701 * 110.25324 * 258.11806 * 9 7 6 12 12 H 1.08005 * 120.00112 * 115.53879 * 11 9 7 13 13 C 1.37884 * 119.99821 * 295.53313 * 11 9 7 14 14 N 1.31506 * 120.00398 * 0.02562 * 13 11 9 15 15 Si 1.86806 * 119.99546 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47367 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46739 * 120.00555 * 15 13 11 18 18 H 1.48495 * 109.47028 * 239.99930 * 15 13 11 19 19 C 1.54341 * 105.02065 * 16.92876 * 9 7 6 20 20 C 1.51399 * 130.32421 * 179.97438 * 6 5 4 21 21 H 1.08998 * 109.47261 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47136 * 300.00410 * 1 2 3 23 23 H 1.09000 * 109.47071 * 60.00452 * 1 2 3 24 24 H 1.07992 * 120.06418 * 0.05335 * 4 3 2 25 25 H 1.08004 * 119.85740 * 180.02562 * 5 4 3 26 26 H 1.08005 * 119.91466 * 179.97438 * 8 7 6 27 27 H 0.96995 * 120.00343 * 179.97438 * 14 13 11 28 28 H 1.09002 * 110.82304 * 215.54579 * 19 9 7 29 29 H 1.09005 * 110.81667 * 92.19576 * 19 9 7 30 30 H 1.08998 * 110.30353 * 43.87092 * 20 6 5 31 31 H 1.09001 * 110.37814 * 281.76381 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2922 2.3758 -0.0005 5 6 1.9233 3.6030 -0.0011 6 6 3.3068 3.6773 -0.0016 7 6 4.0601 2.5180 -0.0011 8 6 3.4300 1.2857 -0.0005 9 6 5.5370 2.8638 0.0022 10 1 6.0742 2.2367 0.7136 11 6 6.1141 2.7005 -1.3803 12 1 6.4945 3.5604 -1.9117 13 6 6.1566 1.4533 -1.9667 14 7 5.6931 0.4064 -1.3198 15 14 6.8727 1.2508 -3.6801 16 1 7.3230 2.5717 -4.1877 17 1 8.0294 0.3210 -3.6265 18 1 5.8354 0.6985 -4.5880 19 6 5.6005 4.3432 0.4377 20 6 4.2231 4.8825 -0.0028 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.2136 2.3221 -0.0001 25 1 1.3362 4.5095 -0.0011 26 1 4.0183 0.3799 -0.0005 27 1 5.7226 -0.4709 -1.7325 28 1 6.4048 4.8654 -0.0804 29 1 5.7209 4.4241 1.5180 30 1 3.8656 5.6301 0.7053 31 1 4.2866 5.3101 -1.0034 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039378714.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:42 Heat of formation + Delta-G solvation = -19.674206 kcal Electronic energy + Delta-G solvation = -14619.913712 eV Core-core repulsion = 12252.163193 eV Total energy + Delta-G solvation = -2367.750519 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.47851 -37.75888 -34.16762 -32.41838 -30.10816 -27.77354 -27.56144 -26.03956 -23.69809 -21.72420 -19.80837 -19.49198 -17.07888 -16.14415 -15.46485 -15.12908 -14.59079 -14.30503 -13.89091 -13.50358 -12.67207 -12.37658 -12.24712 -11.84170 -11.38475 -11.19942 -10.99627 -10.80806 -10.64955 -10.44401 -10.37411 -10.06845 -9.61937 -9.33943 -9.13200 -8.46779 -7.54402 -7.06629 -6.02157 -4.10193 2.43462 2.46718 3.29288 3.37433 3.40412 3.95440 4.40712 4.84195 5.26133 5.36930 5.47859 5.49984 5.68693 5.79067 5.84200 5.94873 6.06766 6.30059 6.51288 6.60043 6.65274 6.87678 6.97225 7.05303 7.23810 7.39083 7.43145 7.59727 7.78916 7.94078 8.10907 8.30886 8.35046 8.92048 9.53819 11.01135 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.024472 B = 0.012149 C = 0.008991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.874617 B = 2304.136086 C = 3113.548825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.321 6.321 3 C 0.099 3.901 4 C -0.234 4.234 5 C -0.091 4.091 6 C -0.154 4.154 7 C 0.006 3.994 8 C -0.112 4.112 9 C 0.075 3.925 10 H 0.039 0.961 11 C -0.506 4.506 12 H 0.062 0.938 13 C 0.063 3.937 14 N -0.878 5.878 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.284 1.284 19 C -0.117 4.117 20 C -0.063 4.063 21 H 0.089 0.911 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.110 0.890 25 H 0.104 0.896 26 H 0.156 0.844 27 H 0.262 0.738 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.264 2.808 2.769 8.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.235 6.235 3 C 0.055 3.945 4 C -0.253 4.253 5 C -0.109 4.109 6 C -0.154 4.154 7 C 0.005 3.995 8 C -0.130 4.130 9 C 0.057 3.943 10 H 0.057 0.943 11 C -0.543 4.543 12 H 0.080 0.920 13 C -0.139 4.139 14 N -0.515 5.515 15 Si 0.721 3.279 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.154 4.154 20 C -0.100 4.100 21 H 0.107 0.893 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.128 0.872 25 H 0.122 0.878 26 H 0.173 0.827 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.188 2.425 2.743 8.067 hybrid contribution -0.210 -0.110 -1.167 1.191 sum -7.398 2.316 1.576 7.911 Atomic orbital electron populations 1.22856 0.80189 1.02631 1.00591 1.86052 1.19843 1.27968 1.89650 1.19080 0.92775 0.83140 0.99539 1.20746 0.98389 0.92601 1.13547 1.20079 0.93269 0.96008 1.01571 1.20590 0.92877 0.96709 1.05202 1.21030 0.98002 0.90615 0.89842 1.20610 0.89579 1.00675 1.02180 1.18459 0.88063 0.90532 0.97289 0.94315 1.21103 1.39016 0.93697 1.00496 0.92028 1.25000 0.95108 0.96000 0.97813 1.69812 1.45015 0.99260 1.37421 0.86507 0.78770 0.78170 0.84433 1.19749 1.20919 1.21033 1.22359 0.95711 0.98752 0.98591 1.20811 0.94298 0.94593 1.00315 0.89263 0.93476 0.93457 0.87158 0.87805 0.82670 0.92784 0.91615 0.93348 0.93058 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.81 101.05 0.99 1.46 16 2 O -0.32 -6.48 10.50 -19.44 -0.20 -6.68 16 3 C 0.10 2.18 6.68 -39.26 -0.26 1.92 16 4 C -0.23 -4.61 9.04 -39.48 -0.36 -4.96 16 5 C -0.09 -1.81 10.03 -39.56 -0.40 -2.20 16 6 C -0.15 -3.38 6.14 -104.16 -0.64 -4.02 16 7 C 0.01 0.15 5.17 -104.06 -0.54 -0.39 16 8 C -0.11 -2.79 8.91 -39.39 -0.35 -3.15 16 9 C 0.07 1.88 2.79 -91.73 -0.26 1.62 16 10 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 11 C -0.51 -13.71 8.49 -34.44 -0.29 -14.00 16 12 H 0.06 1.64 7.59 -52.48 -0.40 1.24 16 13 C 0.06 1.74 5.34 -17.82 -0.10 1.64 16 14 N -0.88 -24.62 9.98 55.43 0.55 -24.07 16 15 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 C -0.12 -2.41 6.57 -25.33 -0.17 -2.58 16 20 C -0.06 -1.23 6.76 -26.84 -0.18 -1.42 16 21 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.05 0.60 7.67 -51.93 -0.40 0.20 16 23 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 24 H 0.11 1.81 6.31 -52.49 -0.33 1.48 16 25 H 0.10 1.74 8.06 -52.48 -0.42 1.31 16 26 H 0.16 4.19 6.08 -52.48 -0.32 3.87 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.07 1.30 7.75 -51.93 -0.40 0.90 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 257.21 15.07 3.88 3.88 Total: -1.00 -29.16 257.21 -7.26 -36.42 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -3.92 Total: 0.23 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: -2.54 Total: -26.07 kcal Atomic # 7 Polarization: -24.62 SS G_CDS: 0.55 Total: -24.07 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.20 Total: -6.68 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.16 -7.26 -36.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039378714.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.749 kcal (2) G-P(sol) polarization free energy of solvation -29.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds