Wall clock time and date at job start Mon Mar 30 2020 02:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35903 * 117.00306 * 2 1 4 4 C 1.38754 * 120.08691 * 359.97438 * 3 2 1 5 5 C 1.37999 * 119.87387 * 180.02562 * 4 3 2 6 6 C 1.38546 * 120.29390 * 0.02617 * 5 4 3 7 7 C 1.38256 * 119.93746 * 359.97394 * 6 5 4 8 8 C 1.38411 * 119.90421 * 0.02562 * 7 6 5 9 9 C 1.51688 * 109.83778 * 180.16367 * 7 6 5 10 10 H 1.08997 * 110.49771 * 135.87208 * 9 7 6 11 11 C 1.50701 * 110.25324 * 258.11806 * 9 7 6 12 12 H 1.08005 * 120.00112 * 115.53879 * 11 9 7 13 13 C 1.37884 * 119.99821 * 295.53313 * 11 9 7 14 14 N 1.31506 * 120.00398 * 0.02562 * 13 11 9 15 15 Si 1.86806 * 119.99546 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47367 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46739 * 120.00555 * 15 13 11 18 18 H 1.48495 * 109.47028 * 239.99930 * 15 13 11 19 19 C 1.54341 * 105.02065 * 16.92876 * 9 7 6 20 20 C 1.51399 * 130.32421 * 179.97438 * 6 5 4 21 21 H 1.08998 * 109.47261 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47136 * 300.00410 * 1 2 3 23 23 H 1.09000 * 109.47071 * 60.00452 * 1 2 3 24 24 H 1.07992 * 120.06418 * 0.05335 * 4 3 2 25 25 H 1.08004 * 119.85740 * 180.02562 * 5 4 3 26 26 H 1.08005 * 119.91466 * 179.97438 * 8 7 6 27 27 H 0.96995 * 120.00343 * 179.97438 * 14 13 11 28 28 H 1.09002 * 110.82304 * 215.54579 * 19 9 7 29 29 H 1.09005 * 110.81667 * 92.19576 * 19 9 7 30 30 H 1.08998 * 110.30353 * 43.87092 * 20 6 5 31 31 H 1.09001 * 110.37814 * 281.76381 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2922 2.3758 -0.0005 5 6 1.9233 3.6030 -0.0011 6 6 3.3068 3.6773 -0.0016 7 6 4.0601 2.5180 -0.0011 8 6 3.4300 1.2857 -0.0005 9 6 5.5370 2.8638 0.0022 10 1 6.0742 2.2367 0.7136 11 6 6.1141 2.7005 -1.3803 12 1 6.4945 3.5604 -1.9117 13 6 6.1566 1.4533 -1.9667 14 7 5.6931 0.4064 -1.3198 15 14 6.8727 1.2508 -3.6801 16 1 7.3230 2.5717 -4.1877 17 1 8.0294 0.3210 -3.6265 18 1 5.8354 0.6985 -4.5880 19 6 5.6005 4.3432 0.4377 20 6 4.2231 4.8825 -0.0028 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.2136 2.3221 -0.0001 25 1 1.3362 4.5095 -0.0011 26 1 4.0183 0.3799 -0.0005 27 1 5.7226 -0.4709 -1.7325 28 1 6.4048 4.8654 -0.0804 29 1 5.7209 4.4241 1.5180 30 1 3.8656 5.6301 0.7053 31 1 4.2866 5.3101 -1.0034 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039378714.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:41 Heat of formation + Delta-G solvation = -36.119682 kcal Electronic energy + Delta-G solvation = -14620.626841 eV Core-core repulsion = 12252.163193 eV Total energy + Delta-G solvation = -2368.463649 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.08849 -39.33357 -35.86667 -34.35196 -31.79608 -29.52786 -29.03498 -27.56554 -25.55852 -23.37357 -21.38989 -21.24578 -18.86041 -17.94870 -17.01566 -16.53770 -16.44088 -15.98856 -15.51818 -15.13431 -14.24139 -14.09108 -13.96603 -13.39007 -13.09686 -12.84386 -12.63200 -12.58958 -12.29126 -12.16144 -11.94864 -11.78793 -11.29032 -11.16319 -10.91096 -10.54791 -9.31704 -8.68742 -8.07090 -6.23372 0.76543 0.79884 1.38389 1.40159 1.51004 2.41171 2.56684 3.11945 3.20840 3.90371 4.16464 4.21889 4.38050 4.43330 4.46854 4.50988 4.71118 4.72616 4.89651 4.98873 5.05664 5.28812 5.29892 5.39651 5.48147 5.67269 5.70402 5.77086 5.83465 6.18604 6.27622 6.34304 6.74921 6.87335 7.43083 8.93271 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.024472 B = 0.012149 C = 0.008991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.874617 B = 2304.136086 C = 3113.548825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.347 6.347 3 C 0.093 3.907 4 C -0.224 4.224 5 C -0.084 4.084 6 C -0.165 4.165 7 C -0.026 4.026 8 C -0.150 4.150 9 C 0.063 3.937 10 H 0.000 1.000 11 C -0.521 4.521 12 H 0.061 0.939 13 C 0.013 3.987 14 N -0.901 5.901 15 Si 0.953 3.047 16 H -0.263 1.263 17 H -0.279 1.279 18 H -0.287 1.287 19 C -0.111 4.111 20 C -0.056 4.056 21 H 0.116 0.884 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.151 0.849 25 H 0.147 0.853 26 H 0.119 0.881 27 H 0.259 0.741 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.355 4.609 2.408 10.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.262 6.262 3 C 0.048 3.952 4 C -0.243 4.243 5 C -0.102 4.102 6 C -0.165 4.165 7 C -0.027 4.027 8 C -0.169 4.169 9 C 0.045 3.955 10 H 0.018 0.982 11 C -0.559 4.559 12 H 0.080 0.920 13 C -0.187 4.187 14 N -0.539 5.539 15 Si 0.779 3.221 16 H -0.187 1.187 17 H -0.205 1.205 18 H -0.214 1.214 19 C -0.148 4.148 20 C -0.093 4.093 21 H 0.134 0.866 22 H 0.084 0.916 23 H 0.077 0.923 24 H 0.169 0.831 25 H 0.165 0.835 26 H 0.137 0.863 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.284 4.234 2.390 10.480 hybrid contribution 0.350 -0.747 -0.992 1.291 sum -8.934 3.488 1.397 9.692 Atomic orbital electron populations 1.23267 0.76904 1.05093 1.01994 1.86018 1.23256 1.27487 1.89450 1.19125 0.92063 0.84852 0.99122 1.21171 1.00266 0.91459 1.11385 1.20566 0.92643 0.97715 0.99228 1.20942 0.94140 0.96348 1.05100 1.21038 0.97944 0.91822 0.91881 1.20496 0.91325 0.99749 1.05300 1.18494 0.88534 0.92934 0.95575 0.98190 1.21416 1.39200 0.93726 1.01530 0.92038 1.25786 0.95667 0.95954 1.01284 1.70015 1.45904 0.99364 1.38633 0.85574 0.77927 0.78399 0.80202 1.18691 1.20454 1.21379 1.22307 0.97179 0.95637 0.99697 1.20805 0.92664 0.94367 1.01433 0.86575 0.91579 0.92260 0.83130 0.83501 0.86272 0.93217 0.91116 0.91694 0.89325 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.81 113.37 1.11 1.67 16 2 O -0.35 -13.85 10.50 -92.46 -0.97 -14.82 16 3 C 0.09 4.08 6.68 22.48 0.15 4.23 16 4 C -0.22 -8.13 9.04 22.34 0.20 -7.93 16 5 C -0.08 -3.01 10.03 22.29 0.22 -2.79 16 6 C -0.17 -6.98 6.14 -19.56 -0.12 -7.10 16 7 C -0.03 -1.33 5.17 -19.50 -0.10 -1.43 16 8 C -0.15 -7.80 8.91 22.40 0.20 -7.60 16 9 C 0.06 3.28 2.79 -11.52 -0.03 3.24 16 10 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 11 C -0.52 -29.03 8.49 25.60 0.22 -28.82 16 12 H 0.06 3.32 7.59 -2.91 -0.02 3.30 16 13 C 0.01 0.73 5.34 84.66 0.45 1.19 16 14 N -0.90 -53.23 9.98 21.45 0.21 -53.02 16 15 Si 0.95 44.67 29.54 68.60 2.03 46.69 16 16 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 19 C -0.11 -4.50 6.57 31.50 0.21 -4.30 16 20 C -0.06 -2.04 6.76 30.53 0.21 -1.83 16 21 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 22 H 0.07 1.44 7.67 -2.38 -0.02 1.42 16 23 H 0.06 1.37 7.66 -2.39 -0.02 1.36 16 24 H 0.15 4.17 6.31 -2.91 -0.02 4.15 16 25 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 26 H 0.12 6.96 6.08 -2.91 -0.02 6.94 16 27 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 28 H 0.07 2.75 7.75 -2.39 -0.02 2.73 16 29 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -66.16 257.21 5.10 -61.06 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 1.12 Total: 11.56 kcal Atomic # 6 Polarization: -54.18 SS G_CDS: 2.72 Total: -51.46 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.21 Total: -53.02 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.97 Total: -14.82 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -66.16 5.10 -61.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039378714.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.935 kcal (2) G-P(sol) polarization free energy of solvation -66.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds