Wall clock time and date at job start Mon Mar 30 2020 02:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00047 * 2 1 4 4 H 1.48504 * 109.47242 * 269.99727 * 3 2 1 5 5 H 1.48501 * 109.47299 * 29.99796 * 3 2 1 6 6 H 1.48507 * 109.47020 * 149.99937 * 3 2 1 7 7 C 1.37872 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99930 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00457 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47401 * 179.97438 * 9 7 2 11 11 C 1.39177 * 119.99754 * 90.00218 * 10 9 7 12 12 C 1.39474 * 120.86481 * 90.34043 * 11 10 9 13 13 C 1.37897 * 119.06285 * 179.73283 * 12 11 10 14 14 N 1.31995 * 120.84573 * 0.54345 * 13 12 11 15 15 C 1.32000 * 121.90704 * 359.72656 * 14 13 12 16 16 C 1.37896 * 120.84197 * 359.97438 * 15 14 13 17 17 C 1.46497 * 120.00393 * 270.00037 * 10 9 7 18 18 C 1.53001 * 117.50294 * 183.32005 * 17 10 9 19 19 C 1.52994 * 60.00113 * 252.50920 * 18 17 10 20 20 H 0.97009 * 119.99898 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46988 * 300.00291 * 9 7 2 22 22 H 1.09005 * 109.46653 * 59.99687 * 9 7 2 23 23 H 1.08002 * 120.46840 * 359.97051 * 12 11 10 24 24 H 1.07998 * 119.57635 * 180.25152 * 13 12 11 25 25 H 1.07999 * 119.57538 * 179.97438 * 15 14 13 26 26 H 1.08005 * 120.46198 * 179.97438 * 16 15 14 27 27 H 1.09001 * 115.54990 * 329.02993 * 17 10 9 28 28 H 1.09001 * 117.49587 * 0.02562 * 18 17 10 29 29 H 1.08997 * 117.50075 * 145.01533 * 18 17 10 30 30 H 1.09001 * 117.49758 * 252.51095 * 19 18 17 31 31 H 1.09004 * 117.49781 * 107.48642 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6550 -4.1416 1.2059 12 6 1.9815 -5.1962 1.8219 13 6 2.4652 -5.6953 3.0129 14 7 3.5436 -5.1809 3.5741 15 6 4.2054 -4.1794 3.0253 16 6 3.7904 -3.6274 1.8317 17 6 2.6789 -4.1695 -1.2681 18 6 3.6112 -5.3809 -1.2025 19 6 4.1648 -4.0101 -1.5964 20 1 -0.4850 0.8401 -0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5570 -0.8897 23 1 1.0958 -5.6184 1.3706 24 1 1.9525 -6.5145 3.4950 25 1 5.0831 -3.7872 3.5174 26 1 4.3364 -2.8077 1.3883 27 1 1.9725 -4.1220 -2.0969 28 1 3.8700 -5.7638 -0.2153 29 1 3.5181 -6.1308 -1.9880 30 1 4.4359 -3.8581 -2.6411 31 1 4.7881 -3.4909 -0.8683 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042549615.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:07 Heat of formation + Delta-G solvation = 57.450226 kcal Electronic energy + Delta-G solvation = -14425.398722 eV Core-core repulsion = 12093.285321 eV Total energy + Delta-G solvation = -2332.113402 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.10851 -38.70930 -35.64705 -34.35948 -32.06597 -31.71761 -28.46222 -24.83837 -24.26450 -23.97739 -23.07823 -21.25482 -18.59186 -17.80949 -17.25448 -17.02737 -16.61663 -16.19526 -15.62428 -14.83197 -14.53865 -14.41295 -14.37372 -13.74942 -13.09454 -13.04418 -12.74404 -12.52242 -12.36811 -12.17707 -11.85210 -11.35581 -11.17862 -10.61091 -10.44455 -10.27578 -10.01581 -8.63601 -8.04723 -6.30284 0.30469 0.36896 1.38174 1.38771 1.49118 2.36383 2.61211 2.95591 3.07729 3.12426 3.64362 3.99766 4.09045 4.10383 4.25884 4.28557 4.35097 4.65737 4.76636 4.91544 4.92848 4.96019 5.10810 5.17232 5.22927 5.30029 5.59249 5.72387 5.78972 6.18486 6.54491 6.90234 7.06873 7.07841 7.42420 8.88669 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.026371 B = 0.009720 C = 0.008571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.506572 B = 2879.958162 C = 3266.220653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.958 3.042 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.053 0.947 9 C 0.294 3.706 10 N -0.655 5.655 11 C 0.227 3.773 12 C -0.193 4.193 13 C 0.101 3.899 14 N -0.512 5.512 15 C 0.098 3.902 16 C -0.191 4.191 17 C 0.106 3.894 18 C -0.172 4.172 19 C -0.207 4.207 20 H 0.264 0.736 21 H -0.009 1.009 22 H 0.008 0.992 23 H 0.138 0.862 24 H 0.184 0.816 25 H 0.175 0.825 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.121 0.879 30 H 0.107 0.893 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.561 -9.849 0.552 11.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.190 4.190 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.573 4.573 8 H 0.071 0.929 9 C 0.173 3.827 10 N -0.379 5.379 11 C 0.126 3.874 12 C -0.215 4.215 13 C -0.055 4.055 14 N -0.222 5.222 15 C -0.058 4.058 16 C -0.213 4.213 17 C 0.001 3.999 18 C -0.210 4.210 19 C -0.247 4.247 20 H 0.073 0.927 21 H 0.009 0.991 22 H 0.026 0.974 23 H 0.156 0.844 24 H 0.201 0.799 25 H 0.192 0.808 26 H 0.137 0.863 27 H 0.132 0.868 28 H 0.098 0.902 29 H 0.139 0.861 30 H 0.125 0.875 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.654 -10.050 1.324 12.125 hybrid contribution -0.155 1.673 -0.888 1.900 sum 6.499 -8.377 0.436 10.611 Atomic orbital electron populations 1.70044 1.07415 1.27811 1.51861 1.25788 0.95640 1.02619 0.95002 0.85563 0.78604 0.79175 0.78369 1.19847 1.20876 1.19413 1.21961 0.93430 0.92184 1.49758 0.92851 1.18437 0.86623 0.83016 0.94600 1.45543 1.53085 1.39181 1.00118 1.17929 0.91251 0.90947 0.87290 1.22812 1.02089 0.98502 0.98075 1.23038 0.92138 0.98555 0.91796 1.67732 1.08655 1.11545 1.34278 1.22924 0.99006 0.91952 0.91923 1.22812 0.98838 1.01564 0.98057 1.21330 0.91396 0.99315 0.87894 1.23217 1.03533 0.91474 1.02814 1.23407 0.99176 0.99914 1.02160 0.92675 0.99064 0.97416 0.84393 0.79874 0.80769 0.86255 0.86802 0.90241 0.86107 0.87473 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.99 13.29 21.44 0.28 -54.70 16 2 C 0.01 0.44 5.46 84.65 0.46 0.91 16 3 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.53 -29.62 9.39 25.60 0.24 -29.38 16 8 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 9 C 0.29 15.27 5.48 85.63 0.47 15.74 16 10 N -0.66 -27.56 2.76 -677.06 -1.87 -29.43 16 11 C 0.23 8.69 3.54 38.57 0.14 8.83 16 12 C -0.19 -6.35 10.00 22.49 0.22 -6.13 16 13 C 0.10 2.94 11.17 84.59 0.94 3.89 16 14 N -0.51 -16.21 10.36 -196.16 -2.03 -18.24 16 15 C 0.10 3.10 11.17 84.59 0.95 4.05 16 16 C -0.19 -6.97 9.98 22.49 0.22 -6.74 16 17 C 0.11 3.76 6.57 44.99 0.30 4.05 16 18 C -0.17 -4.86 9.83 30.59 0.30 -4.56 16 19 C -0.21 -6.50 10.36 30.59 0.32 -6.18 16 20 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 21 H -0.01 -0.49 8.05 -2.39 -0.02 -0.51 16 22 H 0.01 0.43 8.07 -2.38 -0.02 0.41 16 23 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 24 H 0.18 3.87 8.06 -2.91 -0.02 3.85 16 25 H 0.18 4.36 8.06 -2.91 -0.02 4.34 16 26 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 27 H 0.11 3.92 8.14 -2.39 -0.02 3.91 16 28 H 0.08 2.39 7.01 -2.39 -0.02 2.37 16 29 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.07 2.56 8.06 -2.38 -0.02 2.55 16 Total: -1.00 -62.66 274.19 4.07 -58.58 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 1.10 Total: 13.23 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 4.56 Total: -15.53 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -3.61 Total: -102.37 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -62.66 4.07 -58.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549615.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.035 kcal (2) G-P(sol) polarization free energy of solvation -62.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds