Wall clock time and date at job start Mon Mar 30 2020 02:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47067 * 2 1 4 4 H 1.08996 * 109.47319 * 305.59394 * 3 2 1 5 5 C 1.50695 * 109.47182 * 65.59534 * 3 2 1 6 6 H 1.08000 * 120.00220 * 28.13962 * 5 3 2 7 7 C 1.37881 * 120.00014 * 208.13755 * 5 3 2 8 8 N 1.31508 * 120.00040 * 5.97087 * 7 5 3 9 9 Si 1.86803 * 119.99989 * 185.96675 * 7 5 3 10 10 H 1.48502 * 109.47253 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47011 * 119.99927 * 9 7 5 12 12 H 1.48498 * 109.47194 * 240.00142 * 9 7 5 13 13 C 1.50708 * 109.47331 * 185.59639 * 3 2 1 14 14 O 1.21251 * 119.99560 * 270.27710 * 13 3 2 15 15 C 1.47159 * 120.00187 * 89.99490 * 13 3 2 16 16 C 1.39853 * 120.17038 * 359.73199 * 15 13 3 17 17 C 1.37893 * 119.82260 * 179.73534 * 16 15 13 18 18 C 1.38406 * 120.17337 * 0.53539 * 17 16 15 19 19 C 1.38403 * 120.34360 * 359.71724 * 18 17 16 20 20 C 1.37884 * 120.17828 * 0.02562 * 19 18 17 21 21 H 1.09000 * 109.47306 * 293.99561 * 1 2 3 22 22 H 1.08997 * 109.47536 * 54.00169 * 1 2 3 23 23 H 1.09008 * 109.46924 * 173.99999 * 1 2 3 24 24 H 1.09007 * 109.46848 * 240.00039 * 2 1 3 25 25 H 1.09001 * 109.47328 * 120.00075 * 2 1 3 26 26 H 0.96997 * 119.99992 * 179.97438 * 8 7 5 27 27 H 1.08006 * 120.09160 * 359.97438 * 16 15 13 28 28 H 1.07997 * 119.91194 * 180.27395 * 17 16 15 29 29 H 1.07991 * 119.82649 * 179.68904 * 18 17 16 30 30 H 1.08007 * 119.90710 * 179.97438 * 19 18 17 31 31 H 1.08001 * 120.08908 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5971 1.9844 -0.8356 5 6 1.6539 2.1117 1.2938 6 1 1.5280 1.5224 2.1901 7 6 1.4615 3.4765 1.3334 8 7 1.4989 4.1783 0.2219 9 14 1.1474 4.3285 2.9659 10 1 1.1545 3.3228 4.0586 11 1 2.2120 5.3340 3.2124 12 1 -0.1734 5.0059 2.9246 13 6 3.5406 1.4448 -0.1386 14 8 4.2408 1.4065 0.8506 15 6 4.1562 1.4872 -1.4746 16 6 3.3519 1.5198 -2.6183 17 6 3.9363 1.5650 -3.8664 18 6 5.3149 1.5670 -3.9895 19 6 6.1175 1.5296 -2.8626 20 6 5.5484 1.4895 -1.6073 21 1 -0.3634 0.4179 0.9388 22 1 -0.3634 0.6040 -0.8314 23 1 -0.3633 -1.0221 -0.1074 24 1 1.8933 -0.5139 -0.8901 25 1 1.8933 -0.5138 0.8900 26 1 1.3632 5.1384 0.2497 27 1 2.2760 1.5135 -2.5241 28 1 3.3166 1.5947 -4.7504 29 1 5.7666 1.5975 -4.9699 30 1 7.1925 1.5310 -2.9668 31 1 6.1761 1.4599 -0.7289 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043368369.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:54 Heat of formation + Delta-G solvation = -29.337071 kcal Electronic energy + Delta-G solvation = -14376.990222 eV Core-core repulsion = 12008.820690 eV Total energy + Delta-G solvation = -2368.169533 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.19778 -37.30808 -34.31602 -31.89508 -30.75817 -30.49806 -27.42653 -24.52719 -22.94187 -21.99661 -20.53815 -18.73350 -16.75650 -16.34606 -15.05219 -14.77592 -14.45978 -13.88062 -13.45932 -13.38761 -13.20376 -13.00757 -12.41597 -11.86911 -11.47552 -11.22789 -11.08968 -10.98101 -10.90427 -10.59410 -10.40913 -10.18463 -9.27938 -9.20063 -8.64610 -8.58229 -8.43195 -8.15523 -6.09798 -4.09349 1.33976 1.78506 3.29609 3.38819 3.43564 3.45301 4.40684 4.45712 4.99390 5.21479 5.28120 5.37078 5.49399 5.83137 5.87627 6.04887 6.05917 6.22129 6.30910 6.37082 6.63178 6.68934 6.78145 6.85241 6.86947 6.98892 7.12887 7.25149 7.31888 7.53346 7.86461 8.24371 8.88824 8.96238 9.54105 11.00472 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.029740 B = 0.009529 C = 0.008600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.251811 B = 2937.756929 C = 3254.884816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.102 4.102 3 C -0.004 4.004 4 H 0.080 0.920 5 C -0.492 4.492 6 H 0.061 0.939 7 C 0.063 3.937 8 N -0.892 5.892 9 Si 0.894 3.106 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.398 3.602 14 O -0.466 6.466 15 C -0.147 4.147 16 C -0.065 4.065 17 C -0.139 4.139 18 C -0.109 4.109 19 C -0.140 4.140 20 C -0.078 4.078 21 H 0.062 0.938 22 H 0.048 0.952 23 H 0.032 0.968 24 H 0.036 0.964 25 H 0.050 0.950 26 H 0.262 0.738 27 H 0.136 0.864 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.128 -5.170 -7.790 9.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.140 4.140 3 C -0.023 4.023 4 H 0.097 0.903 5 C -0.530 4.530 6 H 0.079 0.921 7 C -0.139 4.139 8 N -0.530 5.530 9 Si 0.722 3.278 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.276 3.724 14 O -0.341 6.341 15 C -0.148 4.148 16 C -0.083 4.083 17 C -0.157 4.157 18 C -0.127 4.127 19 C -0.159 4.159 20 C -0.096 4.096 21 H 0.081 0.919 22 H 0.067 0.933 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.153 0.847 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.471 -5.004 -7.321 9.523 hybrid contribution -0.010 0.800 0.656 1.034 sum 3.461 -4.205 -6.666 8.607 Atomic orbital electron populations 1.21580 0.95895 0.98781 1.02658 1.21371 0.96133 0.97117 0.99407 1.19384 0.88427 0.93322 1.01141 0.90252 1.20846 1.45844 0.92037 0.94278 0.92126 1.25011 0.94655 0.97707 0.96542 1.69908 1.49824 1.07119 1.26176 0.86490 0.77559 0.79615 0.84154 1.19525 1.20964 1.21016 1.23815 0.94187 0.69041 0.85380 1.90310 1.66192 1.36743 1.40882 1.21296 0.93944 1.02325 0.97230 1.21626 1.00683 0.94602 0.91431 1.21109 0.94858 1.02217 0.97475 1.21229 0.93996 0.99285 0.98208 1.21032 0.99518 1.02711 0.92591 1.21476 0.94666 0.95946 0.97542 0.91874 0.93302 0.94899 0.94488 0.93120 0.92802 0.84662 0.86055 0.86467 0.86327 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.63 37.15 0.36 -2.10 16 2 C -0.10 -2.11 5.37 -26.74 -0.14 -2.25 16 3 C 0.00 -0.09 1.60 -92.92 -0.15 -0.24 16 4 H 0.08 2.01 5.77 -51.93 -0.30 1.71 16 5 C -0.49 -13.54 6.87 -34.44 -0.24 -13.78 16 6 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 7 C 0.06 1.76 5.45 -17.82 -0.10 1.66 16 8 N -0.89 -25.54 12.87 55.43 0.71 -24.82 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.40 9.73 6.16 -30.68 -0.19 9.54 16 14 O -0.47 -12.57 16.35 5.58 0.09 -12.48 16 15 C -0.15 -3.05 5.87 -105.07 -0.62 -3.67 16 16 C -0.07 -1.19 9.36 -39.10 -0.37 -1.55 16 17 C -0.14 -2.08 10.03 -39.65 -0.40 -2.48 16 18 C -0.11 -1.52 10.04 -39.46 -0.40 -1.92 16 19 C -0.14 -2.12 10.03 -39.65 -0.40 -2.51 16 20 C -0.08 -1.44 9.60 -39.11 -0.38 -1.82 16 21 H 0.06 1.26 7.60 -51.93 -0.39 0.86 16 22 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 24 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 25 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.14 2.42 6.37 -52.48 -0.33 2.09 16 28 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 31 H 0.13 2.32 7.65 -52.49 -0.40 1.92 16 LS Contribution 270.34 15.07 4.07 4.07 Total: -1.00 -30.51 270.34 -7.08 -37.59 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -3.93 Total: -0.13 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -3.01 Total: -21.10 kcal Atomic # 7 Polarization: -25.54 SS G_CDS: 0.71 Total: -24.82 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.51 -7.08 -37.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043368369.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.258 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds