Wall clock time and date at job start Mon Mar 30 2020 02:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47067 * 2 1 4 4 H 1.08996 * 109.47319 * 305.59394 * 3 2 1 5 5 C 1.50695 * 109.47182 * 65.59534 * 3 2 1 6 6 H 1.08000 * 120.00220 * 28.13962 * 5 3 2 7 7 C 1.37881 * 120.00014 * 208.13755 * 5 3 2 8 8 N 1.31508 * 120.00040 * 5.97087 * 7 5 3 9 9 Si 1.86803 * 119.99989 * 185.96675 * 7 5 3 10 10 H 1.48502 * 109.47253 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47011 * 119.99927 * 9 7 5 12 12 H 1.48498 * 109.47194 * 240.00142 * 9 7 5 13 13 C 1.50708 * 109.47331 * 185.59639 * 3 2 1 14 14 O 1.21251 * 119.99560 * 270.27710 * 13 3 2 15 15 C 1.47159 * 120.00187 * 89.99490 * 13 3 2 16 16 C 1.39853 * 120.17038 * 359.73199 * 15 13 3 17 17 C 1.37893 * 119.82260 * 179.73534 * 16 15 13 18 18 C 1.38406 * 120.17337 * 0.53539 * 17 16 15 19 19 C 1.38403 * 120.34360 * 359.71724 * 18 17 16 20 20 C 1.37884 * 120.17828 * 0.02562 * 19 18 17 21 21 H 1.09000 * 109.47306 * 293.99561 * 1 2 3 22 22 H 1.08997 * 109.47536 * 54.00169 * 1 2 3 23 23 H 1.09008 * 109.46924 * 173.99999 * 1 2 3 24 24 H 1.09007 * 109.46848 * 240.00039 * 2 1 3 25 25 H 1.09001 * 109.47328 * 120.00075 * 2 1 3 26 26 H 0.96997 * 119.99992 * 179.97438 * 8 7 5 27 27 H 1.08006 * 120.09160 * 359.97438 * 16 15 13 28 28 H 1.07997 * 119.91194 * 180.27395 * 17 16 15 29 29 H 1.07991 * 119.82649 * 179.68904 * 18 17 16 30 30 H 1.08007 * 119.90710 * 179.97438 * 19 18 17 31 31 H 1.08001 * 120.08908 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5971 1.9844 -0.8356 5 6 1.6539 2.1117 1.2938 6 1 1.5280 1.5224 2.1901 7 6 1.4615 3.4765 1.3334 8 7 1.4989 4.1783 0.2219 9 14 1.1474 4.3285 2.9659 10 1 1.1545 3.3228 4.0586 11 1 2.2120 5.3340 3.2124 12 1 -0.1734 5.0059 2.9246 13 6 3.5406 1.4448 -0.1386 14 8 4.2408 1.4065 0.8506 15 6 4.1562 1.4872 -1.4746 16 6 3.3519 1.5198 -2.6183 17 6 3.9363 1.5650 -3.8664 18 6 5.3149 1.5670 -3.9895 19 6 6.1175 1.5296 -2.8626 20 6 5.5484 1.4895 -1.6073 21 1 -0.3634 0.4179 0.9388 22 1 -0.3634 0.6040 -0.8314 23 1 -0.3633 -1.0221 -0.1074 24 1 1.8933 -0.5139 -0.8901 25 1 1.8933 -0.5138 0.8900 26 1 1.3632 5.1384 0.2497 27 1 2.2760 1.5135 -2.5241 28 1 3.3166 1.5947 -4.7504 29 1 5.7666 1.5975 -4.9699 30 1 7.1925 1.5310 -2.9668 31 1 6.1761 1.4599 -0.7289 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043368369.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:53 Heat of formation + Delta-G solvation = -46.401501 kcal Electronic energy + Delta-G solvation = -14377.730192 eV Core-core repulsion = 12008.820690 eV Total energy + Delta-G solvation = -2368.909502 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.78665 -38.89570 -36.19830 -33.89539 -32.14648 -31.79347 -29.23122 -26.45364 -24.46814 -23.30966 -22.16786 -20.44525 -18.61549 -18.00475 -16.69805 -16.42798 -16.15433 -15.43156 -15.26489 -15.00230 -14.75292 -14.29238 -14.22591 -13.39975 -13.23291 -12.93065 -12.88906 -12.65483 -12.43936 -12.30652 -11.98285 -11.89227 -11.19854 -11.13461 -10.71998 -10.04691 -9.86182 -9.79135 -8.22839 -6.26855 -0.09156 0.51030 1.33157 1.37068 1.48150 1.81356 2.38354 2.97788 3.07795 3.63052 4.00491 4.13673 4.25784 4.40108 4.45323 4.57407 4.60330 4.64568 4.95230 5.01594 5.11620 5.12120 5.25502 5.34323 5.52039 5.53026 5.56856 5.58991 5.70344 5.72166 6.07448 6.21520 6.81115 7.04565 7.38084 8.87036 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.029740 B = 0.009529 C = 0.008600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.251811 B = 2937.756929 C = 3254.884816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.098 4.098 3 C -0.008 4.008 4 H 0.068 0.932 5 C -0.506 4.506 6 H 0.046 0.954 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.947 3.053 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.393 3.607 14 O -0.512 6.512 15 C -0.187 4.187 16 C -0.077 4.077 17 C -0.133 4.133 18 C -0.090 4.090 19 C -0.134 4.134 20 C -0.096 4.096 21 H 0.042 0.958 22 H 0.049 0.951 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.038 0.962 26 H 0.264 0.736 27 H 0.128 0.872 28 H 0.158 0.842 29 H 0.166 0.834 30 H 0.154 0.846 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.614 -5.515 -10.185 12.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.136 4.136 3 C -0.027 4.027 4 H 0.086 0.914 5 C -0.544 4.544 6 H 0.064 0.936 7 C -0.184 4.184 8 N -0.557 5.557 9 Si 0.773 3.227 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.194 1.194 13 C 0.274 3.726 14 O -0.391 6.391 15 C -0.188 4.188 16 C -0.095 4.095 17 C -0.151 4.151 18 C -0.107 4.107 19 C -0.152 4.152 20 C -0.114 4.114 21 H 0.061 0.939 22 H 0.068 0.932 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.146 0.854 28 H 0.176 0.824 29 H 0.183 0.817 30 H 0.172 0.828 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.936 -5.359 -9.730 11.785 hybrid contribution -0.103 0.863 1.278 1.545 sum 3.833 -4.496 -8.452 10.312 Atomic orbital electron populations 1.21520 0.94245 1.00895 1.01602 1.21336 0.97554 0.94786 0.99943 1.19392 0.88984 0.95170 0.99138 0.91382 1.21090 1.45673 0.92485 0.95107 0.93597 1.25687 0.94888 0.98367 0.99425 1.69988 1.50900 1.07246 1.27528 0.85666 0.77866 0.78487 0.80714 1.19495 1.21258 1.19422 1.24043 0.94188 0.67525 0.86861 1.90268 1.66802 1.39452 1.42583 1.21031 0.95353 1.06597 0.95823 1.21685 1.00310 0.95315 0.92189 1.21534 0.96091 1.00381 0.97075 1.21806 0.93392 0.95691 0.99848 1.21432 1.01582 1.00906 0.91266 1.21549 0.93678 0.97083 0.99081 0.93862 0.93193 0.91341 0.92116 0.94276 0.92732 0.85382 0.82441 0.81693 0.82800 0.86902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 9.63 71.98 0.69 -3.92 16 2 C -0.10 -4.10 5.37 30.59 0.16 -3.94 16 3 C -0.01 -0.39 1.60 -12.29 -0.02 -0.41 16 4 H 0.07 3.57 5.77 -2.39 -0.01 3.55 16 5 C -0.51 -28.85 6.87 25.60 0.18 -28.67 16 6 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 7 C 0.02 0.89 5.45 84.66 0.46 1.35 16 8 N -0.92 -53.70 12.87 21.45 0.28 -53.43 16 9 Si 0.95 45.81 29.54 68.60 2.03 47.84 16 10 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 13 C 0.39 20.01 6.16 28.03 0.17 20.19 16 14 O -0.51 -29.18 16.35 -2.94 -0.05 -29.23 16 15 C -0.19 -7.89 5.87 -20.15 -0.12 -8.01 16 16 C -0.08 -2.72 9.36 22.58 0.21 -2.51 16 17 C -0.13 -3.49 10.03 22.23 0.22 -3.27 16 18 C -0.09 -2.05 10.04 22.35 0.22 -1.83 16 19 C -0.13 -3.59 10.03 22.23 0.22 -3.37 16 20 C -0.10 -3.51 9.60 22.58 0.22 -3.30 16 21 H 0.04 1.73 7.60 -2.39 -0.02 1.72 16 22 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 24 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 27 H 0.13 4.60 6.37 -2.91 -0.02 4.58 16 28 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 29 H 0.17 2.31 8.06 -2.92 -0.02 2.28 16 30 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 31 H 0.11 4.31 7.65 -2.91 -0.02 4.29 16 Total: -1.00 -68.93 270.34 5.99 -62.94 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 1.11 Total: 9.56 kcal Atomic # 6 Polarization: -40.31 SS G_CDS: 2.63 Total: -37.68 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.28 Total: -53.43 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.05 Total: -29.23 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -68.93 5.99 -62.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043368369.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.541 kcal (2) G-P(sol) polarization free energy of solvation -68.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds