Wall clock time and date at job start Mon Mar 30 2020 02:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50693 * 119.99897 * 2 1 4 4 O 1.42903 * 109.47124 * 135.00203 * 3 2 1 5 5 C 1.42890 * 114.00276 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47285 * 180.02562 * 5 4 3 7 7 C 1.37636 * 120.13071 * 0.29977 * 6 5 4 8 8 C 1.38609 * 120.25079 * 180.32422 * 7 6 5 9 9 C 1.38653 * 120.50109 * 359.66983 * 8 7 6 10 10 C 1.37600 * 120.24898 * 0.02562 * 9 8 7 11 11 C 1.40701 * 120.12521 * 180.02562 * 6 5 4 12 12 C 1.41390 * 120.24869 * 359.97438 * 11 6 5 13 13 H 1.08006 * 120.00139 * 25.27541 * 12 11 6 14 14 C 1.39948 * 120.00124 * 205.28500 * 12 11 6 15 15 N 1.30825 * 120.00117 * 16.81318 * 14 12 11 16 16 Si 1.86802 * 119.99880 * 196.81389 * 14 12 11 17 17 H 1.48496 * 109.47107 * 265.18048 * 16 14 12 18 18 H 1.48496 * 109.47249 * 25.18500 * 16 14 12 19 19 H 1.48502 * 109.46617 * 145.18612 * 16 14 12 20 20 H 1.08002 * 119.99754 * 0.02562 * 1 2 3 21 21 H 1.08002 * 119.99979 * 179.97438 * 1 2 3 22 22 H 1.08002 * 119.99754 * 179.97438 * 2 1 3 23 23 H 1.08993 * 109.47371 * 15.00029 * 3 2 1 24 24 H 1.09003 * 109.46873 * 254.99680 * 3 2 1 25 25 H 1.09000 * 109.47248 * 59.99527 * 5 4 3 26 26 H 1.09007 * 109.47514 * 299.99717 * 5 4 3 27 27 H 1.08004 * 119.87031 * 0.02562 * 7 6 5 28 28 H 1.08002 * 119.75121 * 179.70258 * 8 7 6 29 29 H 1.07998 * 119.87893 * 180.02562 * 9 8 7 30 30 H 1.07997 * 120.12664 * 180.02562 * 10 9 8 31 31 H 0.96995 * 120.00062 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9084 2.4347 1.0321 6 6 4.9948 2.2562 2.0612 7 6 5.1093 1.0677 2.7459 8 6 6.1033 0.9032 3.6978 9 6 6.9969 1.9288 3.9667 10 6 6.9051 3.1233 3.2899 11 6 5.8994 3.3019 2.3217 12 6 5.7955 4.5250 1.6201 13 1 4.8454 4.8324 1.2085 14 6 6.9237 5.3372 1.4588 15 7 8.1191 4.8424 1.6527 16 14 6.7226 7.1280 0.9667 17 1 6.8544 7.2542 -0.5070 18 1 5.3821 7.6093 1.3869 19 1 7.7716 7.9441 1.6292 20 1 -0.5400 0.9353 -0.0004 21 1 -0.5400 -0.9353 -0.0004 22 1 1.8500 -0.9353 0.0004 23 1 1.3856 2.1160 0.2660 24 1 2.4755 1.4867 -0.9927 25 1 3.2690 3.2695 1.3192 26 1 4.3588 2.6395 0.0607 27 1 4.4190 0.2620 2.5441 28 1 6.1828 -0.0311 4.2337 29 1 7.7678 1.7896 4.7101 30 1 7.6024 3.9207 3.5007 31 1 8.9010 5.4053 1.5405 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044368746.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:17 Heat of formation + Delta-G solvation = -16.366289 kcal Electronic energy + Delta-G solvation = -13921.101949 eV Core-core repulsion = 11553.494871 eV Total energy + Delta-G solvation = -2367.607077 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.12356 -36.89712 -33.76375 -33.56281 -30.62762 -29.34667 -26.31095 -25.20255 -24.23821 -20.84518 -20.03150 -19.43534 -17.19968 -16.17052 -15.57035 -15.37415 -14.91836 -14.33570 -13.69606 -13.20455 -13.06795 -12.54987 -12.37548 -12.12357 -11.53169 -11.28423 -11.08234 -10.92847 -10.72960 -10.66945 -10.39277 -9.62090 -9.48369 -9.29789 -9.15791 -9.01253 -7.33273 -7.25667 -6.75333 -4.37095 2.23622 2.78306 3.03917 3.06252 3.10407 3.25763 3.91843 4.32117 4.65046 5.15409 5.24437 5.59547 5.64529 5.67476 5.88745 6.15627 6.33226 6.37413 6.46961 6.59669 6.62663 6.71894 6.82745 7.07253 7.31435 7.38940 7.64293 7.66346 7.99423 8.08238 8.18055 8.33592 8.62914 8.88118 8.98025 10.18788 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.026061 B = 0.008197 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.126956 B = 3415.092070 C = 4384.762359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.139 4.139 3 C 0.085 3.915 4 O -0.384 6.384 5 C 0.134 3.866 6 C -0.203 4.203 7 C -0.071 4.071 8 C -0.243 4.243 9 C -0.107 4.107 10 C -0.163 4.163 11 C 0.118 3.882 12 C -0.466 4.466 13 H 0.077 0.923 14 C 0.078 3.922 15 N -0.793 5.793 16 Si 0.905 3.095 17 H -0.271 1.271 18 H -0.261 1.261 19 H -0.275 1.275 20 H 0.096 0.904 21 H 0.100 0.900 22 H 0.114 0.886 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.457 -2.381 -2.791 8.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.157 4.157 3 C 0.008 3.992 4 O -0.304 6.304 5 C 0.059 3.941 6 C -0.205 4.205 7 C -0.089 4.089 8 C -0.263 4.263 9 C -0.125 4.125 10 C -0.182 4.182 11 C 0.115 3.885 12 C -0.496 4.496 13 H 0.095 0.905 14 C -0.140 4.140 15 N -0.419 5.419 16 Si 0.729 3.271 17 H -0.196 1.196 18 H -0.185 1.185 19 H -0.200 1.200 20 H 0.114 0.886 21 H 0.118 0.882 22 H 0.132 0.868 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.136 0.864 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.160 -2.466 -2.696 8.038 hybrid contribution 0.056 1.007 -0.428 1.096 sum -7.104 -1.458 -3.123 7.896 Atomic orbital electron populations 1.23761 0.95607 1.01873 1.01846 1.22844 0.95584 0.98608 0.98672 1.21445 0.89603 0.95055 0.93049 1.87871 1.44106 1.38841 1.59584 1.20918 0.90631 0.84687 0.97857 1.19420 1.02089 0.95657 1.03315 1.20342 0.96813 0.96243 0.95486 1.20411 1.01411 0.99028 1.05404 1.20709 0.97858 0.94718 0.99229 1.21243 1.01906 0.97155 0.97917 1.17307 0.90024 0.91099 0.90038 1.19523 0.95860 1.02743 1.31471 0.90505 1.25882 0.94645 1.00267 0.93208 1.69828 0.98830 1.37000 1.36219 0.86355 0.79431 0.82106 0.79178 1.19606 1.18456 1.20011 0.88599 0.88173 0.86766 0.93282 0.92732 0.93945 0.93394 0.88306 0.89589 0.89528 0.86397 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.15 14.31 29.01 0.42 -1.74 16 2 C -0.14 -1.85 9.89 -36.03 -0.36 -2.21 16 3 C 0.09 1.31 6.35 36.00 0.23 1.54 16 4 O -0.38 -7.63 8.81 -35.23 -0.31 -7.94 16 5 C 0.13 2.91 5.13 36.01 0.18 3.10 16 6 C -0.20 -5.09 5.94 -103.91 -0.62 -5.71 16 7 C -0.07 -1.71 9.36 -39.66 -0.37 -2.08 16 8 C -0.24 -5.75 10.05 -39.29 -0.39 -6.15 16 9 C -0.11 -2.60 10.02 -39.66 -0.40 -3.00 16 10 C -0.16 -4.32 8.69 -38.87 -0.34 -4.66 16 11 C 0.12 3.16 5.56 -106.82 -0.59 2.57 16 12 C -0.47 -12.20 8.50 -37.74 -0.32 -12.52 16 13 H 0.08 1.91 7.01 -52.48 -0.37 1.54 16 14 C 0.08 1.94 5.15 -17.34 -0.09 1.85 16 15 N -0.79 -20.49 10.97 55.55 0.61 -19.88 16 16 Si 0.90 18.48 29.59 -169.99 -5.03 13.45 16 17 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 18 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 19 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 20 H 0.10 0.98 7.90 -52.49 -0.41 0.56 16 21 H 0.10 0.93 8.06 -52.49 -0.42 0.50 16 22 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 23 H 0.05 0.70 7.86 -51.93 -0.41 0.29 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.04 0.89 7.80 -51.93 -0.41 0.48 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.10 2.24 7.00 -52.48 -0.37 1.87 16 28 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 29 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 30 H 0.12 3.19 6.20 -52.49 -0.33 2.86 16 31 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 LS Contribution 270.23 15.07 4.07 4.07 Total: -1.00 -27.83 270.23 -7.27 -35.10 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -3.96 Total: 4.20 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: -2.65 Total: -29.00 kcal Atomic # 7 Polarization: -20.49 SS G_CDS: 0.61 Total: -19.88 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.31 Total: -7.94 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.83 -7.27 -35.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368746.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.733 kcal (2) G-P(sol) polarization free energy of solvation -27.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds