Wall clock time and date at job start Mon Mar 30 2020 02:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50693 * 119.99897 * 2 1 4 4 O 1.42903 * 109.47124 * 135.00203 * 3 2 1 5 5 C 1.42890 * 114.00276 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47285 * 180.02562 * 5 4 3 7 7 C 1.37636 * 120.13071 * 0.29977 * 6 5 4 8 8 C 1.38609 * 120.25079 * 180.32422 * 7 6 5 9 9 C 1.38653 * 120.50109 * 359.66983 * 8 7 6 10 10 C 1.37600 * 120.24898 * 0.02562 * 9 8 7 11 11 C 1.40701 * 120.12521 * 180.02562 * 6 5 4 12 12 C 1.41390 * 120.24869 * 359.97438 * 11 6 5 13 13 H 1.08006 * 120.00139 * 25.27541 * 12 11 6 14 14 C 1.39948 * 120.00124 * 205.28500 * 12 11 6 15 15 N 1.30825 * 120.00117 * 16.81318 * 14 12 11 16 16 Si 1.86802 * 119.99880 * 196.81389 * 14 12 11 17 17 H 1.48496 * 109.47107 * 265.18048 * 16 14 12 18 18 H 1.48496 * 109.47249 * 25.18500 * 16 14 12 19 19 H 1.48502 * 109.46617 * 145.18612 * 16 14 12 20 20 H 1.08002 * 119.99754 * 0.02562 * 1 2 3 21 21 H 1.08002 * 119.99979 * 179.97438 * 1 2 3 22 22 H 1.08002 * 119.99754 * 179.97438 * 2 1 3 23 23 H 1.08993 * 109.47371 * 15.00029 * 3 2 1 24 24 H 1.09003 * 109.46873 * 254.99680 * 3 2 1 25 25 H 1.09000 * 109.47248 * 59.99527 * 5 4 3 26 26 H 1.09007 * 109.47514 * 299.99717 * 5 4 3 27 27 H 1.08004 * 119.87031 * 0.02562 * 7 6 5 28 28 H 1.08002 * 119.75121 * 179.70258 * 8 7 6 29 29 H 1.07998 * 119.87893 * 180.02562 * 9 8 7 30 30 H 1.07997 * 120.12664 * 180.02562 * 10 9 8 31 31 H 0.96995 * 120.00062 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9084 2.4347 1.0321 6 6 4.9948 2.2562 2.0612 7 6 5.1093 1.0677 2.7459 8 6 6.1033 0.9032 3.6978 9 6 6.9969 1.9288 3.9667 10 6 6.9051 3.1233 3.2899 11 6 5.8994 3.3019 2.3217 12 6 5.7955 4.5250 1.6201 13 1 4.8454 4.8324 1.2085 14 6 6.9237 5.3372 1.4588 15 7 8.1191 4.8424 1.6527 16 14 6.7226 7.1280 0.9667 17 1 6.8544 7.2542 -0.5070 18 1 5.3821 7.6093 1.3869 19 1 7.7716 7.9441 1.6292 20 1 -0.5400 0.9353 -0.0004 21 1 -0.5400 -0.9353 -0.0004 22 1 1.8500 -0.9353 0.0004 23 1 1.3856 2.1160 0.2660 24 1 2.4755 1.4867 -0.9927 25 1 3.2690 3.2695 1.3192 26 1 4.3588 2.6395 0.0607 27 1 4.4190 0.2620 2.5441 28 1 6.1828 -0.0311 4.2337 29 1 7.7678 1.7896 4.7101 30 1 7.6024 3.9207 3.5007 31 1 8.9010 5.4053 1.5405 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368746.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:16 Heat of formation + Delta-G solvation = -30.622749 kcal Electronic energy + Delta-G solvation = -13921.720155 eV Core-core repulsion = 11553.494871 eV Total energy + Delta-G solvation = -2368.225284 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.85401 -38.50005 -35.53065 -34.81896 -32.42224 -31.25071 -27.89668 -26.84762 -25.88466 -22.75333 -21.59158 -20.75061 -19.10954 -17.64021 -17.14918 -16.98300 -16.50977 -15.82947 -15.39283 -14.84127 -14.62710 -14.34276 -13.91320 -13.49860 -13.23725 -12.96427 -12.71926 -12.65493 -12.48767 -12.10525 -11.86807 -11.35553 -11.18184 -11.04653 -10.85309 -10.22491 -9.28989 -9.17294 -8.62326 -6.34117 0.96088 1.12410 1.27248 1.39211 1.50653 1.55832 2.21007 2.75543 2.94873 3.69375 4.07521 4.19444 4.35830 4.45555 4.53152 4.56456 4.66851 4.71824 4.76416 4.99986 5.00991 5.17084 5.37618 5.48390 5.66300 5.72889 5.75541 5.94666 6.08810 6.18480 6.34480 6.49296 6.69196 6.94041 7.04040 8.34635 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.026061 B = 0.008197 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.126956 B = 3415.092070 C = 4384.762359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.170 4.170 3 C 0.078 3.922 4 O -0.400 6.400 5 C 0.146 3.854 6 C -0.220 4.220 7 C -0.079 4.079 8 C -0.244 4.244 9 C -0.112 4.112 10 C -0.190 4.190 11 C 0.087 3.913 12 C -0.494 4.494 13 H 0.080 0.920 14 C 0.036 3.964 15 N -0.826 5.826 16 Si 0.980 3.020 17 H -0.262 1.262 18 H -0.258 1.258 19 H -0.267 1.267 20 H 0.106 0.894 21 H 0.123 0.877 22 H 0.113 0.887 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.720 -2.392 -3.155 9.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.188 4.188 3 C 0.002 3.998 4 O -0.320 6.320 5 C 0.070 3.930 6 C -0.221 4.221 7 C -0.097 4.097 8 C -0.263 4.263 9 C -0.130 4.130 10 C -0.209 4.209 11 C 0.085 3.915 12 C -0.523 4.523 13 H 0.098 0.902 14 C -0.179 4.179 15 N -0.452 5.452 16 Si 0.800 3.200 17 H -0.187 1.187 18 H -0.181 1.181 19 H -0.192 1.192 20 H 0.125 0.875 21 H 0.141 0.859 22 H 0.131 0.869 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.121 0.879 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.433 -2.498 -3.061 9.312 hybrid contribution 0.374 0.895 -0.308 1.018 sum -8.059 -1.603 -3.368 8.881 Atomic orbital electron populations 1.24048 0.94771 1.03492 0.98009 1.22761 0.96358 0.97479 1.02196 1.21711 0.88772 0.96904 0.92371 1.87825 1.45173 1.37868 1.61121 1.20654 0.90230 0.85589 0.96547 1.19835 1.02661 0.95589 1.04059 1.20610 0.97232 0.96359 0.95471 1.20778 1.00601 0.99903 1.05066 1.20995 0.98535 0.94137 0.99318 1.21273 1.02507 0.97930 0.99227 1.17694 0.90915 0.92211 0.90706 1.19777 0.96613 1.03499 1.32440 0.90177 1.26756 0.93893 1.04498 0.92726 1.69885 0.99722 1.38810 1.36756 0.85228 0.79492 0.76143 0.79093 1.18706 1.18120 1.19179 0.87544 0.85889 0.86916 0.92237 0.92194 0.93588 0.93915 0.86945 0.86621 0.87128 0.87867 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 14.31 67.78 0.97 -2.23 16 2 C -0.17 -4.23 9.89 25.64 0.25 -3.98 16 3 C 0.08 2.33 6.35 71.23 0.45 2.78 16 4 O -0.40 -15.68 8.81 -148.98 -1.31 -16.99 16 5 C 0.15 6.34 5.13 71.24 0.37 6.70 16 6 C -0.22 -11.14 5.94 -19.40 -0.12 -11.26 16 7 C -0.08 -3.76 9.36 22.22 0.21 -3.55 16 8 C -0.24 -11.29 10.05 22.46 0.23 -11.06 16 9 C -0.11 -5.41 10.02 22.22 0.22 -5.19 16 10 C -0.19 -10.30 8.69 22.73 0.20 -10.10 16 11 C 0.09 4.78 5.56 -21.29 -0.12 4.66 16 12 C -0.49 -26.33 8.50 23.46 0.20 -26.13 16 13 H 0.08 4.05 7.01 -2.91 -0.02 4.03 16 14 C 0.04 1.81 5.15 85.26 0.44 2.25 16 15 N -0.83 -43.36 10.97 21.83 0.24 -43.12 16 16 Si 0.98 37.78 29.59 68.60 2.03 39.81 16 17 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 18 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 19 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 20 H 0.11 1.83 7.90 -2.91 -0.02 1.80 16 21 H 0.12 1.82 8.06 -2.91 -0.02 1.80 16 22 H 0.11 2.80 8.06 -2.91 -0.02 2.78 16 23 H 0.06 1.62 7.86 -2.39 -0.02 1.60 16 24 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.05 1.94 7.80 -2.39 -0.02 1.92 16 26 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.11 4.99 7.00 -2.91 -0.02 4.97 16 28 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 29 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 30 H 0.10 5.79 6.20 -2.91 -0.02 5.77 16 31 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 Total: -1.00 -59.67 270.23 5.36 -54.31 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 1.10 Total: 23.10 kcal Atomic # 6 Polarization: -60.41 SS G_CDS: 3.30 Total: -57.11 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.24 Total: -43.12 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -1.31 Total: -16.99 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Total: -59.67 5.36 -54.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368746.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.686 kcal (2) G-P(sol) polarization free energy of solvation -59.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds