Wall clock time and date at job start Mon Mar 30 2020 02:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31598 * 1 3 3 Si 1.86802 * 119.99886 * 2 1 4 4 H 1.48500 * 109.47206 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47337 * 300.00911 * 3 2 1 6 6 H 1.48501 * 109.46825 * 60.00326 * 3 2 1 7 7 C 1.38787 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00425 * 165.10000 * 7 2 1 9 9 N 1.36858 * 119.99690 * 345.09327 * 7 2 1 10 10 C 1.46906 * 120.52314 * 333.22215 * 9 7 2 11 11 C 1.53422 * 107.81000 * 224.73660 * 10 9 7 12 12 C 1.52852 * 108.84205 * 296.78824 * 11 10 9 13 13 C 1.50626 * 110.46563 * 51.25401 * 12 11 10 14 14 C 1.38515 * 118.86657 * 159.57569 * 13 12 11 15 15 C 1.38027 * 120.41921 * 180.02562 * 14 13 12 16 16 C 1.39033 * 120.11323 * 359.43345 * 15 14 13 17 17 N 1.39676 * 120.11968 * 180.33501 * 16 15 14 18 18 C 1.38639 * 119.76417 * 0.58395 * 16 15 14 19 19 C 1.38842 * 121.45906 * 339.42641 * 13 12 11 20 20 H 0.96996 * 120.00266 * 5.20982 * 1 2 3 21 21 H 1.08998 * 109.79244 * 105.15659 * 10 9 7 22 22 H 1.09000 * 109.84009 * 344.34141 * 10 9 7 23 23 H 1.09006 * 109.57961 * 176.97714 * 11 10 9 24 24 H 1.09000 * 109.57728 * 56.59585 * 11 10 9 25 25 H 1.09002 * 109.30183 * 290.95623 * 12 11 10 26 26 H 1.08992 * 109.14601 * 171.45934 * 12 11 10 27 27 H 1.08002 * 119.78994 * 359.77361 * 14 13 12 28 28 H 1.08010 * 119.94528 * 179.66314 * 15 14 13 29 29 H 0.97001 * 119.99767 * 180.25228 * 17 16 15 30 30 H 0.96997 * 119.99620 * 0.24342 * 17 16 15 31 31 H 1.08003 * 120.02101 * 179.80089 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7100 1.3465 -0.0006 5 1 1.8911 2.3966 -1.2124 6 1 1.8912 2.3964 1.2126 7 6 2.0100 -1.2019 -0.0005 8 1 3.0627 -1.2175 -0.2410 9 7 1.3602 -2.3673 0.3038 10 6 0.1710 -2.3552 1.1663 11 6 0.3134 -3.4999 2.1779 12 6 0.3315 -4.8279 1.4213 13 6 1.3504 -4.7886 0.3126 14 6 1.8248 -5.9838 -0.2022 15 6 2.7592 -5.9851 -1.2181 16 6 3.2230 -4.7832 -1.7409 17 7 4.1633 -4.7845 -2.7737 18 6 2.7526 -3.5833 -1.2299 19 6 1.8166 -3.5857 -0.2007 20 1 -0.4850 0.8365 -0.0763 21 1 -0.7241 -2.5051 0.5628 22 1 0.1057 -1.4032 1.6931 23 1 -0.5300 -3.4843 2.8683 24 1 1.2442 -3.3832 2.7330 25 1 -0.6552 -5.0145 0.9974 26 1 0.5836 -5.6306 2.1141 27 1 1.4644 -6.9205 0.1966 28 1 3.1281 -6.9215 -1.6102 29 1 4.4884 -3.9448 -3.1347 30 1 4.4913 -5.6250 -3.1299 31 1 3.1124 -2.6472 -1.6308 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051296773.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:34 Heat of formation + Delta-G solvation = 9.561855 kcal Electronic energy + Delta-G solvation = -14664.372566 eV Core-core repulsion = 12330.182569 eV Total energy + Delta-G solvation = -2334.189997 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.68237 -37.95586 -35.65581 -33.88723 -33.37799 -30.13203 -29.19001 -27.36281 -24.82240 -23.38117 -22.80955 -20.25121 -19.16516 -17.93408 -17.38212 -16.61435 -16.38379 -15.69599 -15.24399 -15.03813 -14.45937 -14.16485 -13.98714 -13.64290 -13.49227 -13.21323 -12.88563 -12.67284 -12.26220 -12.08242 -12.01397 -11.37510 -11.25140 -11.14738 -10.74093 -10.12814 -8.52099 -8.27200 -7.92758 -5.68221 1.02815 1.15416 1.39436 1.46328 1.52583 2.28212 2.96540 3.14238 3.43079 3.45498 4.15944 4.32076 4.37136 4.47545 4.68540 4.81306 4.88728 5.09089 5.12734 5.18597 5.25451 5.33890 5.43366 5.44923 5.55345 5.82150 5.90278 6.06650 6.15827 6.37340 6.83730 6.91201 7.26577 7.54671 7.89022 8.78507 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.027912 B = 0.011376 C = 0.008438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.922249 B = 2460.802220 C = 3317.423770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.020 4.020 3 Si 0.987 3.013 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.315 4.315 8 H 0.080 0.920 9 N -0.481 5.481 10 C 0.156 3.844 11 C -0.134 4.134 12 C -0.049 4.049 13 C -0.259 4.259 14 C -0.029 4.029 15 C -0.292 4.292 16 C 0.248 3.752 17 N -0.872 5.872 18 C -0.310 4.310 19 C 0.225 3.775 20 H 0.267 0.733 21 H 0.023 0.977 22 H 0.062 0.938 23 H 0.089 0.911 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.129 0.871 29 H 0.397 0.603 30 H 0.405 0.595 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.519 -7.979 0.120 8.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.220 4.220 3 Si 0.812 3.188 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.443 4.443 8 H 0.097 0.903 9 N -0.172 5.172 10 C 0.033 3.967 11 C -0.172 4.172 12 C -0.086 4.086 13 C -0.266 4.266 14 C -0.049 4.049 15 C -0.317 4.317 16 C 0.142 3.858 17 N -0.413 5.413 18 C -0.339 4.339 19 C 0.112 3.888 20 H 0.077 0.923 21 H 0.042 0.958 22 H 0.081 0.919 23 H 0.107 0.893 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.103 0.897 27 H 0.155 0.845 28 H 0.147 0.853 29 H 0.225 0.775 30 H 0.235 0.765 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.230 -7.561 0.341 8.229 hybrid contribution 0.441 1.310 -0.574 1.496 sum 3.671 -6.251 -0.232 7.253 Atomic orbital electron populations 1.70127 1.07060 1.28135 1.49744 1.26128 0.96330 1.02480 0.97055 0.84942 0.78499 0.77579 0.77811 1.18893 1.20532 1.20155 1.19654 0.93738 0.84404 1.46539 0.90256 1.42796 1.27070 1.02808 1.44530 1.21168 0.86650 0.97893 0.91030 1.21952 1.01855 0.95604 0.97773 1.20071 0.96765 0.96955 0.94811 1.19273 1.09383 0.91661 1.06300 1.20672 0.93844 0.96309 0.94031 1.20257 1.09048 0.95569 1.06798 1.17529 0.87920 0.92982 0.87351 1.42293 1.47822 1.10998 1.40145 1.19950 1.11542 0.96267 1.06162 1.17998 0.93544 0.86423 0.90866 0.92310 0.95827 0.91909 0.89266 0.93023 0.92291 0.89746 0.84548 0.85325 0.77511 0.76549 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.49 11.15 21.65 0.24 -51.25 16 2 C -0.02 -1.10 4.97 84.86 0.42 -0.68 16 3 Si 0.99 42.95 29.58 68.60 2.03 44.98 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.31 -17.63 8.64 84.04 0.73 -16.91 16 8 H 0.08 4.44 6.87 -2.91 -0.02 4.42 16 9 N -0.48 -25.83 2.98 -510.06 -1.52 -27.35 16 10 C 0.16 7.74 4.96 86.44 0.43 8.17 16 11 C -0.13 -5.20 6.11 30.69 0.19 -5.01 16 12 C -0.05 -1.77 5.78 29.78 0.17 -1.59 16 13 C -0.26 -10.94 5.77 -19.68 -0.11 -11.05 16 14 C -0.03 -1.04 9.65 22.29 0.22 -0.83 16 15 C -0.29 -10.23 9.89 22.41 0.22 -10.00 16 16 C 0.25 9.52 6.75 38.18 0.26 9.78 16 17 N -0.87 -25.21 9.09 -51.46 -0.47 -25.68 16 18 C -0.31 -14.59 9.04 22.58 0.20 -14.38 16 19 C 0.23 11.18 6.32 38.27 0.24 11.42 16 20 H 0.27 14.24 8.32 -92.71 -0.77 13.47 16 21 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.06 3.33 6.45 -2.39 -0.02 3.32 16 23 H 0.09 2.89 8.14 -2.38 -0.02 2.87 16 24 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.08 2.51 8.12 -2.39 -0.02 2.49 16 27 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 28 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 29 H 0.40 10.73 8.84 -92.71 -0.82 9.91 16 30 H 0.40 8.98 8.84 -92.71 -0.82 8.17 16 31 H 0.09 4.61 6.58 -2.91 -0.02 4.59 16 Total: -1.00 -63.81 254.72 2.76 -61.05 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: -0.49 Total: 29.34 kcal Atomic # 6 Polarization: -34.06 SS G_CDS: 2.96 Total: -31.10 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -1.75 Total: -104.27 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -63.81 2.76 -61.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051296773.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.614 kcal (2) G-P(sol) polarization free energy of solvation -63.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds