Wall clock time and date at job start Mon Mar 30 2020 02:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31597 * 1 3 3 Si 1.86801 * 119.99726 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99755 * 3 2 1 5 5 H 1.48502 * 109.46964 * 29.99646 * 3 2 1 6 6 H 1.48497 * 109.47309 * 149.99967 * 3 2 1 7 7 C 1.38789 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00243 * 192.07709 * 7 2 1 9 9 N 1.36849 * 119.99962 * 12.07454 * 7 2 1 10 10 C 1.46912 * 120.52167 * 27.60554 * 9 7 2 11 11 C 1.53433 * 107.81684 * 135.23345 * 10 9 7 12 12 H 1.08993 * 109.57882 * 303.24764 * 11 10 9 13 13 N 1.46901 * 109.57616 * 182.98529 * 11 10 9 14 14 C 1.52871 * 108.83126 * 63.18199 * 11 10 9 15 15 C 1.50593 * 110.45601 * 308.76024 * 14 11 10 16 16 C 1.38443 * 118.95023 * 200.56135 * 15 14 11 17 17 C 1.38175 * 120.31881 * 180.16775 * 16 15 14 18 18 C 1.38345 * 120.18907 * 359.97438 * 17 16 15 19 19 C 1.37980 * 119.93252 * 359.94985 * 18 17 16 20 20 C 1.38770 * 121.49462 * 20.58199 * 15 14 11 21 21 H 0.96994 * 120.00156 * 4.98786 * 1 2 3 22 22 H 1.09000 * 109.79595 * 15.65686 * 10 9 7 23 23 H 1.08999 * 109.79363 * 254.81208 * 10 9 7 24 24 H 1.00902 * 110.99706 * 180.02562 * 13 11 10 25 25 H 1.00902 * 111.00224 * 303.95244 * 13 11 10 26 26 H 1.08997 * 109.30631 * 69.05957 * 14 11 10 27 27 H 1.09001 * 109.30240 * 188.45762 * 14 11 10 28 28 H 1.07999 * 119.84119 * 0.14946 * 16 15 14 29 29 H 1.07999 * 119.90503 * 180.02562 * 17 16 15 30 30 H 1.08006 * 120.03741 * 179.97438 * 18 17 16 31 31 H 1.07998 * 119.99455 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5474 1.4403 0.7000 7 6 2.0099 -1.2019 0.0005 8 1 3.0720 -1.2122 0.1962 9 7 1.3484 -2.3741 -0.2469 10 6 0.1335 -2.3852 -1.0728 11 6 0.2423 -3.5613 -2.0521 12 1 1.1545 -3.4634 -2.6406 13 7 -0.9227 -3.5661 -2.9470 14 6 0.2813 -4.8652 -1.2550 15 6 1.3336 -4.7937 -0.1801 16 6 1.8248 -5.9717 0.3562 17 6 2.7882 -5.9390 1.3462 18 6 3.2698 -4.7273 1.8085 19 6 2.7878 -3.5477 1.2792 20 6 1.8176 -3.5776 0.2809 21 1 -0.4850 0.8368 -0.0730 22 1 0.0552 -1.4498 -1.6268 23 1 -0.7432 -2.5135 -0.4380 24 1 -0.8730 -4.3328 -3.6010 25 1 -1.7830 -3.5955 -2.4205 26 1 -0.6922 -5.0358 -0.7953 27 1 0.5088 -5.6921 -1.9277 28 1 1.4529 -6.9208 -0.0006 29 1 3.1670 -6.8621 1.7596 30 1 4.0226 -4.7046 2.5827 31 1 3.1627 -2.6013 1.6397 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069731459.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:35 Heat of formation + Delta-G solvation = 14.206009 kcal Electronic energy + Delta-G solvation = -14753.843365 eV Core-core repulsion = 12419.854753 eV Total energy + Delta-G solvation = -2333.988612 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.87135 -37.72799 -36.35738 -33.70554 -32.52716 -30.24394 -29.02009 -27.50501 -25.02668 -23.08004 -22.75669 -20.44454 -19.10661 -18.06192 -16.94587 -16.54678 -16.25178 -15.84017 -15.21582 -14.83826 -14.57994 -14.37606 -14.13220 -13.82821 -13.51707 -13.18385 -12.90597 -12.51507 -12.23801 -12.19412 -11.91708 -11.78686 -11.35026 -11.07291 -10.36709 -9.64914 -9.36412 -8.48396 -8.12329 -5.75489 0.78611 0.99511 1.39923 1.45482 1.51440 2.27088 2.92359 3.12515 3.28633 3.78778 3.97312 4.12109 4.23612 4.36891 4.47829 4.58799 4.73771 4.87582 4.92894 5.03381 5.18117 5.29883 5.40316 5.43894 5.48070 5.78836 5.92445 5.99514 6.10466 6.20058 6.50241 6.66122 6.78512 7.46001 7.80416 8.75086 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.025913 B = 0.012245 C = 0.008694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.291260 B = 2286.094326 C = 3219.744634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.019 4.019 3 Si 0.987 3.013 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.318 4.318 8 H 0.084 0.916 9 N -0.479 5.479 10 C 0.171 3.829 11 C 0.080 3.920 12 H 0.062 0.938 13 N -0.837 5.837 14 C -0.082 4.082 15 C -0.211 4.211 16 C -0.069 4.069 17 C -0.223 4.223 18 C -0.077 4.077 19 C -0.232 4.232 20 C 0.187 3.813 21 H 0.267 0.733 22 H 0.067 0.933 23 H 0.021 0.979 24 H 0.353 0.647 25 H 0.345 0.655 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.931 -8.538 -2.008 8.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.220 4.220 3 Si 0.811 3.189 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.447 4.447 8 H 0.101 0.899 9 N -0.171 5.171 10 C 0.047 3.953 11 C -0.033 4.033 12 H 0.081 0.919 13 N -0.368 5.368 14 C -0.121 4.121 15 C -0.218 4.218 16 C -0.088 4.088 17 C -0.244 4.244 18 C -0.096 4.096 19 C -0.256 4.256 20 C 0.075 3.925 21 H 0.077 0.923 22 H 0.085 0.915 23 H 0.040 0.960 24 H 0.168 0.832 25 H 0.158 0.842 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.918 -7.382 -2.323 7.793 hybrid contribution 0.023 0.309 0.616 0.690 sum 0.941 -7.072 -1.707 7.336 Atomic orbital electron populations 1.70163 1.07010 1.28387 1.48968 1.26153 0.96316 1.02583 0.96898 0.84995 0.78130 0.77279 0.78462 1.19867 1.20756 1.18822 1.19675 0.92821 0.84258 1.47934 0.89879 1.42676 1.25306 1.03405 1.45722 1.21018 0.86027 0.97470 0.90832 1.21646 0.94225 0.94546 0.92900 0.91931 1.58718 1.03916 1.53001 1.21129 1.20978 0.96966 0.98448 0.95706 1.19332 1.05917 0.91820 1.04683 1.20944 0.95692 0.96459 0.95660 1.20854 1.03105 0.97530 1.02905 1.21009 0.98288 0.91927 0.98332 1.20729 1.04636 0.98516 1.01711 1.18344 0.95145 0.86799 0.92249 0.92331 0.91502 0.96050 0.83231 0.84173 0.91800 0.89445 0.84599 0.84710 0.85232 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.01 11.03 21.65 0.24 -50.77 16 2 C -0.02 -1.04 5.03 84.86 0.43 -0.61 16 3 Si 0.99 42.84 29.57 68.60 2.03 44.87 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 7 C -0.32 -17.59 8.63 84.04 0.73 -16.87 16 8 H 0.08 4.54 6.90 -2.91 -0.02 4.52 16 9 N -0.48 -25.24 2.98 -510.00 -1.52 -26.76 16 10 C 0.17 8.35 4.50 86.45 0.39 8.74 16 11 C 0.08 3.05 3.42 45.02 0.15 3.21 16 12 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 13 N -0.84 -25.84 9.26 -168.26 -1.56 -27.39 16 14 C -0.08 -2.80 5.36 29.77 0.16 -2.64 16 15 C -0.21 -8.54 5.76 -19.72 -0.11 -8.65 16 16 C -0.07 -2.36 9.66 22.30 0.22 -2.15 16 17 C -0.22 -7.45 10.04 22.28 0.22 -7.23 16 18 C -0.08 -2.87 10.04 22.23 0.22 -2.64 16 19 C -0.23 -10.62 9.19 22.45 0.21 -10.42 16 20 C 0.19 8.99 6.32 38.28 0.24 9.23 16 21 H 0.27 14.25 8.32 -92.71 -0.77 13.48 16 22 H 0.07 3.63 6.42 -2.39 -0.02 3.62 16 23 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.35 8.53 9.04 -89.69 -0.81 7.71 16 25 H 0.35 9.93 8.98 -89.69 -0.81 9.13 16 26 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.09 2.45 8.12 -2.39 -0.02 2.43 16 28 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 29 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 30 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 31 H 0.10 4.72 6.60 -2.91 -0.02 4.70 16 Total: -1.00 -61.69 255.12 1.57 -60.12 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: -0.47 Total: 29.97 kcal Atomic # 6 Polarization: -32.89 SS G_CDS: 2.85 Total: -30.04 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -2.84 Total: -104.92 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -61.69 1.57 -60.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069731459.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.324 kcal (2) G-P(sol) polarization free energy of solvation -61.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds