Wall clock time and date at job start Mon Mar 30 2020 03:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31412 * 119.00976 * 2 1 4 4 C 1.33920 * 120.37945 * 180.02562 * 3 2 1 5 5 C 1.41552 * 120.58817 * 180.19260 * 4 3 2 6 6 H 1.08002 * 120.00312 * 180.02562 * 5 4 3 7 7 C 1.40117 * 120.00118 * 359.97438 * 5 4 3 8 8 N 1.30674 * 119.99949 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00382 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47339 * 180.02562 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00678 * 9 7 5 12 12 H 1.48504 * 109.46636 * 60.00237 * 9 7 5 13 13 C 1.41294 * 118.82305 * 0.46723 * 4 3 2 14 14 C 1.37471 * 118.30126 * 359.02990 * 13 4 3 15 15 N 1.31835 * 119.00816 * 179.97438 * 2 1 3 16 16 C 1.50461 * 122.55233 * 180.86305 * 14 13 4 17 17 C 1.52800 * 110.46972 * 342.41842 * 16 14 13 18 18 C 1.53310 * 108.53654 * 51.03088 * 17 16 14 19 19 C 1.50295 * 118.80144 * 179.56144 * 13 4 3 20 20 H 1.08999 * 109.47553 * 90.00183 * 1 2 3 21 21 H 1.09005 * 109.47089 * 209.99659 * 1 2 3 22 22 H 1.08997 * 109.47336 * 329.99652 * 1 2 3 23 23 H 0.96996 * 120.00331 * 179.97438 * 8 7 5 24 24 H 1.08991 * 109.30461 * 102.72163 * 16 14 13 25 25 H 1.08996 * 109.30129 * 222.31950 * 16 14 13 26 26 H 1.09000 * 109.62466 * 170.74110 * 17 16 14 27 27 H 1.09000 * 109.62904 * 291.31554 * 17 16 14 28 28 H 1.08996 * 109.64091 * 50.03735 * 18 17 16 29 29 H 1.08997 * 109.64110 * 170.66130 * 18 17 16 30 30 H 1.08997 * 109.46053 * 41.78592 * 19 13 4 31 31 H 1.09002 * 108.92156 * 282.33051 * 19 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1442 1.1492 0.0000 4 6 3.4830 1.1813 -0.0005 5 6 4.1740 2.4167 0.0036 6 1 5.2539 2.4315 0.0027 7 6 3.4570 3.6205 0.0077 8 7 2.1503 3.6026 0.0082 9 14 4.3687 5.2508 0.0138 10 1 3.3885 6.3662 0.0181 11 1 5.2210 5.3367 1.2267 12 1 5.2216 5.3454 -1.1982 13 6 4.1936 -0.0400 -0.0112 14 6 3.4754 -1.2121 0.0000 15 7 2.1462 -1.1530 0.0005 16 6 4.1337 -2.5649 0.0092 17 6 5.5936 -2.4518 -0.4276 18 6 6.2678 -1.3551 0.4049 19 6 5.6961 -0.0034 -0.0218 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3634 0.8899 0.5139 23 1 1.6539 4.4359 0.0114 24 1 4.0901 -2.9800 1.0161 25 1 3.6058 -3.2272 -0.6768 26 1 6.1005 -3.4021 -0.2602 27 1 5.6403 -2.1899 -1.4846 28 1 6.0648 -1.5212 1.4628 29 1 7.3433 -1.3701 0.2284 30 1 6.0454 0.7684 0.6640 31 1 6.0368 0.2299 -1.0306 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074278893.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:08 Heat of formation + Delta-G solvation = 13.744498 kcal Electronic energy + Delta-G solvation = -14640.708667 eV Core-core repulsion = 12306.700042 eV Total energy + Delta-G solvation = -2334.008624 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.39358 -36.06359 -34.20755 -31.79746 -30.92163 -29.30541 -27.12875 -26.23549 -22.91748 -21.76506 -20.83758 -18.73170 -17.37599 -16.12893 -14.95805 -14.62568 -14.05082 -13.53225 -13.17401 -13.04243 -12.62637 -12.45925 -11.93376 -11.88049 -11.38245 -11.33477 -11.22158 -10.77848 -10.67809 -10.48567 -10.38773 -10.34422 -9.87293 -9.57967 -8.77095 -8.40983 -7.55444 -7.34404 -6.43494 -4.73945 2.69056 2.88059 3.03215 3.04981 3.23809 3.87051 4.71943 5.22151 5.44088 5.45017 5.67665 5.71646 5.84041 6.07872 6.15897 6.21039 6.27535 6.36762 6.45231 6.55362 6.59999 6.63964 6.71081 6.77946 6.86896 6.93450 7.07367 7.29720 7.53322 7.93134 8.05776 8.53403 8.81233 9.14452 10.15180 10.29186 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.027063 B = 0.011818 C = 0.008358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.380446 B = 2368.651044 C = 3349.347917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.302 3.698 3 N -0.518 5.518 4 C 0.273 3.727 5 C -0.420 4.420 6 H 0.089 0.911 7 C 0.069 3.931 8 N -0.707 5.707 9 Si 0.909 3.091 10 H -0.276 1.276 11 H -0.263 1.263 12 H -0.263 1.263 13 C -0.281 4.281 14 C 0.163 3.837 15 N -0.627 5.627 16 C -0.058 4.058 17 C -0.114 4.114 18 C -0.118 4.118 19 C -0.043 4.043 20 H 0.061 0.939 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.275 0.725 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.980 -3.524 0.032 5.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.031 3.969 3 N -0.239 5.239 4 C 0.143 3.857 5 C -0.454 4.454 6 H 0.107 0.893 7 C -0.158 4.158 8 N -0.328 5.328 9 Si 0.732 3.268 10 H -0.201 1.201 11 H -0.188 1.188 12 H -0.188 1.188 13 C -0.290 4.290 14 C 0.026 3.974 15 N -0.351 5.351 16 C -0.096 4.096 17 C -0.151 4.151 18 C -0.155 4.155 19 C -0.082 4.082 20 H 0.080 0.920 21 H 0.079 0.921 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.792 -3.386 0.035 4.389 hybrid contribution 1.217 0.809 -0.024 1.462 sum 4.009 -2.577 0.011 4.766 Atomic orbital electron populations 1.20219 0.89113 1.01662 1.01516 1.22729 0.96715 0.85169 0.92270 1.69209 1.08670 1.25736 1.20247 1.18777 0.88062 0.91650 0.87168 1.19661 0.94464 0.88983 1.42316 0.89259 1.26137 0.94892 1.01272 0.93467 1.70089 1.06856 1.28615 1.27253 0.86365 0.80076 0.80300 0.80023 1.20101 1.18794 1.18788 1.20625 0.95846 0.94714 1.17822 1.20377 0.89743 0.93368 0.93960 1.67868 1.08989 1.30717 1.27515 1.20133 0.94332 0.93941 1.01242 1.21508 0.95301 0.98220 1.00119 1.21569 0.98426 0.95937 0.99582 1.19887 0.92349 0.95718 1.00197 0.92004 0.92061 0.91039 0.91332 0.91447 0.91305 0.92365 0.92064 0.92381 0.92643 0.91834 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 10.31 36.00 0.37 -1.02 16 2 C 0.30 7.87 7.64 -157.49 -1.20 6.67 16 3 N -0.52 -14.68 7.94 -8.65 -0.07 -14.75 16 4 C 0.27 7.57 6.58 -84.53 -0.56 7.01 16 5 C -0.42 -11.07 8.67 -37.61 -0.33 -11.39 16 6 H 0.09 2.16 6.25 -52.49 -0.33 1.84 16 7 C 0.07 1.74 5.50 -17.34 -0.10 1.65 16 8 N -0.71 -18.62 11.52 55.55 0.64 -17.98 16 9 Si 0.91 18.21 29.56 -169.99 -5.02 13.19 16 10 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 11 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 12 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 13 C -0.28 -6.95 5.79 -103.94 -0.60 -7.55 16 14 C 0.16 3.89 6.63 -82.46 -0.55 3.35 16 15 N -0.63 -15.95 10.20 -7.26 -0.07 -16.03 16 16 C -0.06 -1.10 5.95 -28.10 -0.17 -1.26 16 17 C -0.11 -1.81 5.97 -26.67 -0.16 -1.97 16 18 C -0.12 -1.94 5.98 -26.65 -0.16 -2.10 16 19 C -0.04 -0.88 4.88 -28.16 -0.14 -1.01 16 20 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 21 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 22 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 23 H 0.28 6.56 8.29 -40.82 -0.34 6.22 16 24 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.00 8.10 -51.93 -0.42 0.57 16 28 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.29 6.92 -51.93 -0.36 0.93 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 257.25 15.07 3.88 3.88 Total: -1.00 -30.08 257.25 -8.28 -38.36 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -4.05 Total: 0.99 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -3.58 Total: -7.65 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.50 Total: -48.76 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.02 Total: 13.19 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.08 -8.28 -38.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074278893.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.100 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds