Wall clock time and date at job start Mon Mar 30 2020 03:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31412 * 119.00976 * 2 1 4 4 C 1.33920 * 120.37945 * 180.02562 * 3 2 1 5 5 C 1.41552 * 120.58817 * 180.19260 * 4 3 2 6 6 H 1.08002 * 120.00312 * 180.02562 * 5 4 3 7 7 C 1.40117 * 120.00118 * 359.97438 * 5 4 3 8 8 N 1.30674 * 119.99949 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00382 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47339 * 180.02562 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00678 * 9 7 5 12 12 H 1.48504 * 109.46636 * 60.00237 * 9 7 5 13 13 C 1.41294 * 118.82305 * 0.46723 * 4 3 2 14 14 C 1.37471 * 118.30126 * 359.02990 * 13 4 3 15 15 N 1.31835 * 119.00816 * 179.97438 * 2 1 3 16 16 C 1.50461 * 122.55233 * 180.86305 * 14 13 4 17 17 C 1.52800 * 110.46972 * 342.41842 * 16 14 13 18 18 C 1.53310 * 108.53654 * 51.03088 * 17 16 14 19 19 C 1.50295 * 118.80144 * 179.56144 * 13 4 3 20 20 H 1.08999 * 109.47553 * 90.00183 * 1 2 3 21 21 H 1.09005 * 109.47089 * 209.99659 * 1 2 3 22 22 H 1.08997 * 109.47336 * 329.99652 * 1 2 3 23 23 H 0.96996 * 120.00331 * 179.97438 * 8 7 5 24 24 H 1.08991 * 109.30461 * 102.72163 * 16 14 13 25 25 H 1.08996 * 109.30129 * 222.31950 * 16 14 13 26 26 H 1.09000 * 109.62466 * 170.74110 * 17 16 14 27 27 H 1.09000 * 109.62904 * 291.31554 * 17 16 14 28 28 H 1.08996 * 109.64091 * 50.03735 * 18 17 16 29 29 H 1.08997 * 109.64110 * 170.66130 * 18 17 16 30 30 H 1.08997 * 109.46053 * 41.78592 * 19 13 4 31 31 H 1.09002 * 108.92156 * 282.33051 * 19 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1442 1.1492 0.0000 4 6 3.4830 1.1813 -0.0005 5 6 4.1740 2.4167 0.0036 6 1 5.2539 2.4315 0.0027 7 6 3.4570 3.6205 0.0077 8 7 2.1503 3.6026 0.0082 9 14 4.3687 5.2508 0.0138 10 1 3.3885 6.3662 0.0181 11 1 5.2210 5.3367 1.2267 12 1 5.2216 5.3454 -1.1982 13 6 4.1936 -0.0400 -0.0112 14 6 3.4754 -1.2121 0.0000 15 7 2.1462 -1.1530 0.0005 16 6 4.1337 -2.5649 0.0092 17 6 5.5936 -2.4518 -0.4276 18 6 6.2678 -1.3551 0.4049 19 6 5.6961 -0.0034 -0.0218 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3634 0.8899 0.5139 23 1 1.6539 4.4359 0.0114 24 1 4.0901 -2.9800 1.0161 25 1 3.6058 -3.2272 -0.6768 26 1 6.1005 -3.4021 -0.2602 27 1 5.6403 -2.1899 -1.4846 28 1 6.0648 -1.5212 1.4628 29 1 7.3433 -1.3701 0.2284 30 1 6.0454 0.7684 0.6640 31 1 6.0368 0.2299 -1.0306 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074278893.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:07 Heat of formation + Delta-G solvation = -3.838029 kcal Electronic energy + Delta-G solvation = -14641.471102 eV Core-core repulsion = 12306.700042 eV Total energy + Delta-G solvation = -2334.771060 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.22579 -37.64438 -36.10210 -33.65844 -32.62723 -30.96953 -28.89638 -28.06554 -24.57615 -23.39205 -22.65506 -20.32338 -19.30851 -17.89512 -16.80559 -16.19065 -15.74413 -15.29529 -14.67223 -14.57433 -14.31767 -14.12261 -13.62701 -13.50230 -13.02252 -12.99812 -12.89495 -12.54311 -12.41025 -11.99932 -11.93148 -11.76273 -11.40302 -11.32899 -10.59226 -10.35381 -9.43505 -9.28699 -8.33166 -6.72472 0.79546 1.04578 1.38501 1.51617 1.56189 2.18374 2.82368 3.62496 3.78282 3.97537 4.11144 4.15216 4.21966 4.53085 4.61235 4.74821 4.77350 4.88268 4.92455 4.94571 5.03795 5.08116 5.13974 5.17337 5.27178 5.32780 5.51134 5.53443 5.77125 6.05306 6.11059 6.61987 6.85119 7.21296 8.25463 8.38325 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.027063 B = 0.011818 C = 0.008358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.380446 B = 2368.651044 C = 3349.347917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.275 3.725 3 N -0.553 5.553 4 C 0.232 3.768 5 C -0.446 4.446 6 H 0.101 0.899 7 C 0.022 3.978 8 N -0.746 5.746 9 Si 0.990 3.010 10 H -0.268 1.268 11 H -0.256 1.256 12 H -0.256 1.256 13 C -0.299 4.299 14 C 0.145 3.855 15 N -0.637 5.637 16 C -0.056 4.056 17 C -0.106 4.106 18 C -0.111 4.111 19 C -0.041 4.041 20 H 0.074 0.926 21 H 0.081 0.919 22 H 0.068 0.932 23 H 0.282 0.718 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.681 -4.017 0.036 6.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.005 3.995 3 N -0.275 5.275 4 C 0.102 3.898 5 C -0.480 4.480 6 H 0.119 0.881 7 C -0.201 4.201 8 N -0.368 5.368 9 Si 0.809 3.191 10 H -0.192 1.192 11 H -0.180 1.180 12 H -0.180 1.180 13 C -0.307 4.307 14 C 0.008 3.992 15 N -0.362 5.362 16 C -0.094 4.094 17 C -0.144 4.144 18 C -0.148 4.148 19 C -0.080 4.080 20 H 0.093 0.907 21 H 0.100 0.900 22 H 0.087 0.913 23 H 0.093 0.907 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.498 -3.912 0.039 5.961 hybrid contribution 0.645 0.909 -0.027 1.115 sum 5.144 -3.003 0.013 5.956 Atomic orbital electron populations 1.20243 0.86359 1.02459 1.02578 1.23576 0.98758 0.85145 0.92069 1.69205 1.09512 1.27006 1.21767 1.19421 0.88672 0.93586 0.88114 1.20081 0.95235 0.89642 1.43011 0.88137 1.27149 0.95647 1.05003 0.92324 1.70194 1.08676 1.30086 1.27849 0.85143 0.78667 0.74902 0.80348 1.19236 1.17963 1.17974 1.21100 0.98254 0.94081 1.17307 1.21272 0.89544 0.95674 0.92688 1.68004 1.10056 1.30319 1.27829 1.20260 0.95968 0.90892 1.02275 1.21517 0.93389 0.99964 0.99541 1.21553 1.00255 0.93537 0.99480 1.19914 0.89672 0.98212 1.00154 0.90700 0.90016 0.91343 0.90704 0.90229 0.90622 0.88284 0.92506 0.92490 0.89226 0.92571 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.46 10.31 71.23 0.73 -1.72 16 2 C 0.28 14.69 7.64 138.85 1.06 15.75 16 3 N -0.55 -32.47 7.94 -181.29 -1.44 -33.91 16 4 C 0.23 13.24 6.58 40.39 0.27 13.50 16 5 C -0.45 -24.02 8.67 23.54 0.20 -23.81 16 6 H 0.10 4.94 6.25 -2.91 -0.02 4.92 16 7 C 0.02 1.13 5.50 85.32 0.47 1.60 16 8 N -0.75 -40.34 11.52 21.85 0.25 -40.09 16 9 Si 0.99 37.30 29.56 68.60 2.03 39.32 16 10 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 11 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 12 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 13 C -0.30 -14.96 5.79 -19.42 -0.11 -15.07 16 14 C 0.14 6.92 6.63 42.12 0.28 7.20 16 15 N -0.64 -32.77 10.20 -176.88 -1.80 -34.57 16 16 C -0.06 -1.99 5.95 29.71 0.18 -1.81 16 17 C -0.11 -3.03 5.97 30.63 0.18 -2.84 16 18 C -0.11 -3.33 5.98 30.64 0.18 -3.15 16 19 C -0.04 -1.64 4.88 29.67 0.14 -1.50 16 20 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 21 H 0.08 3.06 8.14 -2.38 -0.02 3.04 16 22 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 23 H 0.28 13.73 8.29 -92.71 -0.77 12.96 16 24 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 25 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 28 H 0.06 1.73 8.10 -2.39 -0.02 1.71 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 2.27 6.92 -2.39 -0.02 2.25 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -67.15 257.25 3.75 -63.40 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 1.12 Total: 17.72 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 3.59 Total: -11.86 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -2.99 Total: -108.58 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.32 kcal Total: -67.15 3.75 -63.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074278893.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.562 kcal (2) G-P(sol) polarization free energy of solvation -67.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds