Wall clock time and date at job start Mon Mar 30 2020 02:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99721 * 2 1 4 4 H 1.48497 * 109.47112 * 240.00341 * 3 2 1 5 5 H 1.48500 * 109.47181 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46894 * 120.00169 * 3 2 1 7 7 C 1.37877 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99770 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99694 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.13349 * 300.70082 * 9 7 2 11 11 C 1.54517 * 110.21503 * 178.95762 * 9 7 2 12 12 C 1.55076 * 102.51262 * 219.49055 * 11 9 7 13 13 N 1.48645 * 102.22833 * 35.94516 * 12 11 9 14 14 C 1.39674 * 111.00012 * 201.39521 * 13 12 11 15 15 C 1.38915 * 120.07132 * 327.01631 * 14 13 12 16 16 C 1.38108 * 119.92079 * 179.77266 * 15 14 13 17 17 C 1.38286 * 120.07414 * 0.50423 * 16 15 14 18 18 C 1.38282 * 120.15018 * 359.75033 * 17 16 15 19 19 C 1.38108 * 120.07681 * 359.97438 * 18 17 16 20 20 N 1.46203 * 105.83783 * 321.92023 * 13 12 11 21 21 H 0.96996 * 120.00394 * 359.97438 * 1 2 3 22 22 H 1.08997 * 110.80058 * 337.74868 * 11 9 7 23 23 H 1.09000 * 110.79690 * 101.23207 * 11 9 7 24 24 H 1.09005 * 110.84768 * 277.75620 * 12 11 9 25 25 H 1.09000 * 110.85276 * 154.13471 * 12 11 9 26 26 H 1.07998 * 120.04276 * 0.02562 * 15 14 13 27 27 H 1.08000 * 119.96063 * 180.25430 * 16 15 14 28 28 H 1.08001 * 119.92153 * 179.76768 * 17 16 15 29 29 H 1.07999 * 119.96293 * 180.02562 * 18 17 16 30 30 H 1.08002 * 120.03622 * 180.02562 * 19 18 17 31 31 H 1.00902 * 110.99957 * 147.46280 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6114 -2.5630 0.8797 11 6 2.2397 -3.6864 -0.0276 12 6 1.5413 -4.6832 -0.9885 13 7 0.9174 -3.7745 -1.9858 14 6 -0.1360 -4.4075 -2.6495 15 6 -0.0827 -5.7736 -2.8962 16 6 -1.1281 -6.3971 -3.5486 17 6 -2.2223 -5.6614 -3.9654 18 6 -2.2761 -4.3005 -3.7262 19 6 -1.2368 -3.6715 -3.0692 20 7 0.4403 -2.6184 -1.2286 21 1 -0.4850 0.8400 0.0004 22 1 3.2057 -3.3767 -0.4262 23 1 2.3509 -4.1201 0.9662 24 1 0.7821 -5.2620 -0.4624 25 1 2.2705 -5.3392 -1.4640 26 1 0.7734 -6.3480 -2.5745 27 1 -1.0892 -7.4598 -3.7370 28 1 -3.0368 -6.1509 -4.4787 29 1 -3.1323 -3.7289 -4.0526 30 1 -1.2797 -2.6087 -2.8824 31 1 0.4954 -1.7762 -1.7816 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075577868.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:53 Heat of formation + Delta-G solvation = 61.648134 kcal Electronic energy + Delta-G solvation = -14428.193570 eV Core-core repulsion = 12096.262203 eV Total energy + Delta-G solvation = -2331.931367 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.23342 -37.06035 -33.32749 -31.42606 -30.65381 -28.95226 -27.96196 -24.98590 -22.65536 -21.92602 -20.19489 -19.72420 -17.14870 -16.61106 -15.30706 -15.17247 -14.61107 -14.13073 -13.99792 -12.95457 -12.75168 -12.58035 -12.21943 -12.13543 -11.83925 -11.32329 -11.13366 -10.92066 -10.63754 -10.53476 -10.41115 -10.21126 -9.56389 -9.32588 -8.66773 -8.45994 -7.93372 -6.65190 -6.13298 -4.27838 1.87570 1.93834 3.24443 3.30127 3.32345 4.10209 4.31471 4.63590 5.12787 5.27466 5.37246 5.48906 5.57354 5.69730 5.81544 5.91250 6.03002 6.15320 6.22743 6.46306 6.54584 6.59533 6.73455 6.85827 7.02089 7.15936 7.29004 7.61277 7.73369 7.77318 8.01590 8.27993 8.71767 8.83228 9.41068 10.89426 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.043236 B = 0.008010 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.449761 B = 3494.653038 C = 3976.386440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.071 3.929 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.194 3.806 10 H 0.055 0.945 11 C -0.132 4.132 12 C 0.038 3.962 13 N -0.350 5.350 14 C 0.135 3.865 15 C -0.170 4.170 16 C -0.102 4.102 17 C -0.167 4.167 18 C -0.101 4.101 19 C -0.130 4.130 20 N -0.501 5.501 21 H 0.265 0.735 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.076 0.924 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.130 0.870 31 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.391 -8.656 -4.714 9.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.134 4.134 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.588 4.588 8 H 0.078 0.922 9 C 0.086 3.914 10 H 0.073 0.927 11 C -0.171 4.171 12 C -0.089 4.089 13 N -0.151 5.151 14 C 0.034 3.966 15 C -0.192 4.192 16 C -0.121 4.121 17 C -0.186 4.186 18 C -0.120 4.120 19 C -0.152 4.152 20 N -0.224 5.224 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.133 0.867 30 H 0.148 0.852 31 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.652 -8.643 -4.741 9.995 hybrid contribution 0.812 1.126 0.164 1.397 sum -0.840 -7.517 -4.578 8.841 Atomic orbital electron populations 1.69998 1.05682 1.27146 1.47914 1.25096 0.94943 0.99360 0.94028 0.86631 0.79669 0.82824 0.78751 1.20146 1.21123 1.20146 1.21463 0.93219 0.90525 1.53549 0.92246 1.20089 0.89689 0.92065 0.89515 0.92724 1.23019 1.00192 0.96332 0.97607 1.23346 0.97732 0.94924 0.92882 1.64225 1.21492 1.06071 1.23303 1.19281 0.89820 0.91545 0.95951 1.20874 1.00053 0.93205 1.05082 1.20811 0.93948 0.98937 0.98407 1.20867 0.98956 0.94453 1.04368 1.20979 0.98204 0.94604 0.98231 1.20974 0.92792 1.01044 1.00367 1.66102 1.50140 1.01923 1.04234 0.92503 0.91406 0.91961 0.92911 0.90557 0.86603 0.86909 0.87144 0.86711 0.85244 0.82235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.04 12.58 55.43 0.70 -23.34 16 2 C 0.07 1.90 5.10 -17.82 -0.09 1.81 16 3 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.55 -14.55 8.43 -34.44 -0.29 -14.84 16 8 H 0.06 1.57 7.55 -52.49 -0.40 1.17 16 9 C 0.19 4.79 3.41 -67.66 -0.23 4.56 16 10 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 11 C -0.13 -2.70 6.63 -24.84 -0.16 -2.87 16 12 C 0.04 0.71 5.44 -1.76 -0.01 0.70 16 13 N -0.35 -7.41 5.88 -56.04 -0.33 -7.73 16 14 C 0.14 2.64 5.89 -83.79 -0.49 2.14 16 15 C -0.17 -2.85 8.96 -39.38 -0.35 -3.20 16 16 C -0.10 -1.51 10.04 -39.61 -0.40 -1.91 16 17 C -0.17 -2.45 10.04 -39.55 -0.40 -2.84 16 18 C -0.10 -1.63 10.04 -39.61 -0.40 -2.03 16 19 C -0.13 -2.49 9.32 -39.38 -0.37 -2.85 16 20 N -0.50 -12.00 5.84 -4.55 -0.03 -12.03 16 21 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 22 H 0.07 1.40 7.68 -51.93 -0.40 1.00 16 23 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 24 H 0.05 0.97 7.76 -51.93 -0.40 0.57 16 25 H 0.08 1.24 7.70 -51.93 -0.40 0.84 16 26 H 0.12 1.75 6.77 -52.49 -0.36 1.39 16 27 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.13 2.64 7.16 -52.49 -0.38 2.27 16 31 H 0.36 9.26 7.43 -173.97 -1.29 7.97 16 LS Contribution 259.27 15.07 3.91 3.91 Total: -1.00 -27.52 259.27 -8.84 -36.36 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -4.87 Total: 8.60 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -3.19 Total: -21.34 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.34 Total: -43.11 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -27.52 -8.84 -36.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075577868.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.006 kcal (2) G-P(sol) polarization free energy of solvation -27.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds