Wall clock time and date at job start Mon Mar 30 2020 02:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86792 * 119.99977 * 2 1 4 4 H 1.48495 * 109.47323 * 264.76516 * 3 2 1 5 5 H 1.48500 * 109.47132 * 24.76369 * 3 2 1 6 6 H 1.48503 * 109.47261 * 144.76425 * 3 2 1 7 7 C 1.37873 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00493 * 6.09421 * 7 2 1 9 9 C 1.50704 * 119.99622 * 186.09506 * 7 2 1 10 10 H 1.08994 * 109.26822 * 334.58803 * 9 7 2 11 11 N 1.46623 * 109.24213 * 94.08335 * 9 7 2 12 12 C 1.47156 * 110.25155 * 172.81965 * 11 9 7 13 13 C 1.52904 * 108.49675 * 288.73014 * 12 11 9 14 14 C 1.50741 * 109.95605 * 50.51118 * 13 12 11 15 15 C 1.38752 * 118.41531 * 163.08889 * 14 13 12 16 16 C 1.37893 * 120.45493 * 179.57191 * 15 14 13 17 17 C 1.38932 * 119.75184 * 359.97438 * 16 15 14 18 18 N 1.39669 * 120.15057 * 180.02562 * 17 16 15 19 19 C 1.38693 * 119.70859 * 0.08656 * 17 16 15 20 20 C 1.37906 * 121.61996 * 342.80807 * 14 13 12 21 21 H 0.96998 * 120.00020 * 359.97438 * 1 2 3 22 22 H 1.00895 * 110.99969 * 296.23965 * 11 9 7 23 23 H 1.09000 * 109.63156 * 48.45715 * 12 11 9 24 24 H 1.09008 * 109.62873 * 169.03835 * 12 11 9 25 25 H 1.09001 * 109.41222 * 290.35043 * 13 12 11 26 26 H 1.09000 * 109.37201 * 170.64825 * 13 12 11 27 27 H 1.08005 * 119.77450 * 359.54749 * 15 14 13 28 28 H 1.07999 * 120.12644 * 180.02562 * 16 15 14 29 29 H 0.97006 * 120.00103 * 359.97438 * 18 17 16 30 30 H 0.97008 * 120.00637 * 179.97438 * 18 17 16 31 31 H 1.07997 * 119.84142 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6073 1.9825 -1.3942 5 1 1.3957 2.6820 0.5865 6 1 3.4871 1.4746 0.8078 7 6 2.0045 -1.1941 -0.0005 8 1 1.4691 -2.1267 -0.1002 9 6 3.5052 -1.1978 0.1380 10 1 3.9016 -0.2471 -0.2181 11 7 3.8596 -1.3714 1.5502 12 6 5.3133 -1.5499 1.6922 13 6 5.6880 -2.9294 1.1494 14 6 5.0994 -3.1185 -0.2254 15 6 5.6054 -4.1321 -1.0265 16 6 5.0920 -4.3481 -2.2880 17 6 4.0607 -3.5454 -2.7593 18 7 3.5341 -3.7572 -4.0355 19 6 3.5570 -2.5320 -1.9575 20 6 4.0781 -2.3173 -0.6911 21 1 -0.4850 0.8400 0.0004 22 1 3.5353 -0.5920 2.1028 23 1 5.8342 -0.7788 1.1247 24 1 5.5894 -1.4832 2.7447 25 1 5.3014 -3.6989 1.8176 26 1 6.7733 -3.0132 1.0931 27 1 6.4072 -4.7559 -0.6598 28 1 5.4896 -5.1388 -2.9069 29 1 3.8887 -4.4658 -4.5951 30 1 2.8137 -3.1957 -4.3624 31 1 2.7551 -1.9070 -2.3216 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075751732.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:26 Heat of formation + Delta-G solvation = -0.501987 kcal Electronic energy + Delta-G solvation = -14617.238858 eV Core-core repulsion = 12282.612460 eV Total energy + Delta-G solvation = -2334.626398 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.76394 -37.89068 -35.28579 -34.42343 -32.93712 -30.91901 -29.19006 -27.18144 -24.45768 -23.44879 -22.46323 -20.25049 -19.03644 -17.95042 -17.52178 -16.62916 -16.24849 -16.09156 -15.45023 -14.93469 -14.61433 -14.43685 -14.10977 -13.85196 -13.59666 -12.94925 -12.90328 -12.65882 -12.49784 -12.02354 -11.84735 -11.33236 -11.19189 -10.89963 -10.76152 -9.52180 -9.01354 -8.31487 -8.15058 -6.35847 0.71972 0.86686 1.27868 1.30415 1.39627 2.27897 2.94276 3.10326 3.16780 3.75789 4.10047 4.15947 4.32681 4.44104 4.59102 4.67019 4.70907 4.79178 4.97111 5.00746 5.19219 5.27363 5.29338 5.48892 5.61754 5.77074 6.03701 6.11733 6.37015 6.56072 6.64711 6.74949 6.80975 7.14323 7.29295 8.85407 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.026178 B = 0.012263 C = 0.009210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.350037 B = 2282.731496 C = 3039.428039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.020 3.980 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.254 1.254 7 C -0.486 4.486 8 H 0.027 0.973 9 C 0.217 3.783 10 H 0.004 0.996 11 N -0.691 5.691 12 C 0.044 3.956 13 C -0.058 4.058 14 C -0.158 4.158 15 C -0.078 4.078 16 C -0.207 4.207 17 C 0.198 3.802 18 N -0.872 5.872 19 C -0.202 4.202 20 C -0.028 4.028 21 H 0.267 0.733 22 H 0.332 0.668 23 H 0.019 0.981 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.407 0.593 30 H 0.399 0.601 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.374 -5.208 -3.481 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.179 4.179 3 Si 0.768 3.232 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.179 1.179 7 C -0.525 4.525 8 H 0.046 0.954 9 C 0.109 3.891 10 H 0.021 0.979 11 N -0.323 5.323 12 C -0.086 4.086 13 C -0.095 4.095 14 C -0.160 4.160 15 C -0.096 4.096 16 C -0.229 4.229 17 C 0.094 3.906 18 N -0.413 5.413 19 C -0.225 4.225 20 C -0.029 4.029 21 H 0.076 0.924 22 H 0.149 0.851 23 H 0.038 0.962 24 H 0.110 0.890 25 H 0.090 0.910 26 H 0.113 0.887 27 H 0.166 0.834 28 H 0.163 0.837 29 H 0.237 0.763 30 H 0.227 0.773 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.102 -5.780 -3.436 14.727 hybrid contribution -0.479 1.803 -0.562 1.948 sum 12.623 -3.977 -3.998 13.826 Atomic orbital electron populations 1.70050 1.07996 1.28060 1.51930 1.25877 0.95460 1.02427 0.94108 0.85804 0.79000 0.79261 0.79170 1.19664 1.20720 1.17867 1.20862 0.90315 0.92802 1.48522 0.95445 1.18293 0.93655 0.91334 0.85779 0.97866 1.61079 1.12813 1.48064 1.10301 1.22144 0.88611 0.96742 1.01055 1.20393 1.00135 0.96824 0.92195 1.19729 0.99170 0.99005 0.98136 1.21075 0.99245 0.96155 0.93161 1.20736 1.00378 1.03412 0.98378 1.17823 0.92990 0.93394 0.86418 1.42309 1.43280 1.41244 1.14484 1.20571 1.03866 1.02007 0.96052 1.19734 0.93507 0.96114 0.93549 0.92362 0.85063 0.96240 0.88996 0.91019 0.88655 0.83413 0.83699 0.76269 0.77307 0.88428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.55 13.96 21.45 0.30 -58.25 16 2 C 0.02 1.15 5.47 84.65 0.46 1.61 16 3 Si 0.94 44.39 27.01 68.60 1.85 46.24 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.25 -11.13 6.79 99.48 0.68 -10.46 16 7 C -0.49 -28.43 7.82 25.60 0.20 -28.23 16 8 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 9 C 0.22 10.74 2.14 43.46 0.09 10.84 16 10 H 0.00 0.21 5.25 -2.39 -0.01 0.19 16 11 N -0.69 -30.60 6.46 -499.65 -3.23 -33.83 16 12 C 0.04 1.50 6.58 86.22 0.57 2.07 16 13 C -0.06 -1.83 5.94 29.83 0.18 -1.66 16 14 C -0.16 -5.93 5.78 -19.81 -0.11 -6.05 16 15 C -0.08 -2.40 9.64 22.31 0.22 -2.18 16 16 C -0.21 -6.20 9.90 22.35 0.22 -5.98 16 17 C 0.20 6.91 6.75 38.17 0.26 7.16 16 18 N -0.87 -23.22 9.09 -51.49 -0.47 -23.69 16 19 C -0.20 -8.87 8.93 22.47 0.20 -8.67 16 20 C -0.03 -1.26 5.47 -19.87 -0.11 -1.36 16 21 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 22 H 0.33 14.50 8.88 -89.70 -0.80 13.71 16 23 H 0.02 0.67 8.05 -2.39 -0.02 0.65 16 24 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 25 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 28 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 29 H 0.41 7.96 8.85 -92.70 -0.82 7.14 16 30 H 0.40 10.36 8.84 -92.70 -0.82 9.54 16 31 H 0.10 4.75 7.32 -2.91 -0.02 4.73 16 Total: -1.00 -69.60 256.04 -0.67 -70.27 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: -1.30 Total: 31.70 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: 2.17 Total: -32.44 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -3.40 Total: -115.77 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.85 Total: 46.24 kcal Total: -69.60 -0.67 -70.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075751732.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.768 kcal (2) G-P(sol) polarization free energy of solvation -69.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds