Wall clock time and date at job start Mon Mar 30 2020 02:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38372 * 119.86168 * 2 1 4 4 C 1.38188 * 120.27165 * 180.02562 * 3 2 1 5 5 C 1.38816 * 119.85879 * 359.97438 * 4 3 2 6 6 C 1.39687 * 119.83897 * 359.94146 * 5 4 3 7 7 C 1.38292 * 119.85644 * 179.97438 * 2 1 3 8 8 N 1.40089 * 119.86592 * 180.22877 * 6 5 4 9 9 C 1.47057 * 118.70416 * 343.47713 * 8 6 5 10 10 C 1.53554 * 108.23324 * 44.92562 * 9 8 6 11 11 N 1.39613 * 120.28237 * 179.91606 * 5 4 3 12 12 C 1.36810 * 120.58796 * 343.33497 * 11 5 4 13 13 H 1.08000 * 119.99431 * 333.01815 * 12 11 5 14 14 C 1.38754 * 119.99891 * 153.01488 * 12 11 5 15 15 N 1.31621 * 120.00142 * 345.51870 * 14 12 11 16 16 Si 1.86799 * 119.99501 * 165.51757 * 14 12 11 17 17 H 1.48498 * 109.47529 * 90.00280 * 16 14 12 18 18 H 1.48504 * 109.46975 * 210.00286 * 16 14 12 19 19 H 1.48501 * 109.47120 * 329.99623 * 16 14 12 20 20 H 1.08999 * 109.46775 * 89.99848 * 1 2 3 21 21 H 1.08999 * 109.47016 * 209.99813 * 1 2 3 22 22 H 1.08998 * 109.46993 * 329.99821 * 1 2 3 23 23 H 1.07994 * 119.86141 * 0.02562 * 3 2 1 24 24 H 1.08000 * 120.06586 * 179.97438 * 4 3 2 25 25 H 1.08001 * 120.06008 * 0.02562 * 7 2 1 26 26 H 0.97001 * 120.67758 * 163.46197 * 8 6 5 27 27 H 1.09004 * 109.71802 * 285.23238 * 9 8 6 28 28 H 1.08994 * 109.72012 * 164.62882 * 9 8 6 29 29 H 1.08993 * 109.71247 * 63.06043 * 10 9 8 30 30 H 1.08995 * 109.71484 * 183.69785 * 10 9 8 31 31 H 0.97003 * 119.99744 * 185.04162 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2000 0.0000 4 6 3.5778 1.2099 -0.0005 5 6 4.2775 0.0110 -0.0005 6 6 3.5813 -1.2001 0.0012 7 6 2.1954 -1.1994 0.0005 8 7 4.2869 -2.4103 0.0061 9 6 5.7117 -2.3986 -0.3576 10 6 6.3830 -1.2231 0.3671 11 7 5.6736 0.0106 -0.0028 12 6 6.3695 1.1384 -0.3428 13 1 5.9258 1.8678 -1.0043 14 6 7.6452 1.3451 0.1622 15 7 8.0770 0.6236 1.1749 16 14 8.7498 2.6472 -0.5952 17 1 8.5349 3.9429 0.0978 18 1 10.1698 2.2375 -0.4494 19 1 8.4232 2.7963 -2.0361 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.6515 2.1326 0.0004 24 1 4.1122 2.1484 -0.0009 25 1 1.6541 -2.1339 0.0005 26 1 3.8447 -3.2400 0.2449 27 1 5.8151 -2.2734 -1.4355 28 1 6.1775 -3.3348 -0.0499 29 1 6.3224 -1.3728 1.4450 30 1 7.4274 -1.1519 0.0634 31 1 8.9393 0.8167 1.5752 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076926684.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:41 Heat of formation + Delta-G solvation = 39.955998 kcal Electronic energy + Delta-G solvation = -14622.521401 eV Core-core repulsion = 12289.649393 eV Total energy + Delta-G solvation = -2332.872008 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.07870 -36.08235 -34.34155 -31.94220 -30.69169 -29.13204 -26.98423 -25.78439 -23.43743 -22.10262 -21.14193 -18.75494 -17.19406 -16.26757 -15.91683 -14.81666 -14.56329 -13.72226 -13.23504 -13.20360 -13.03646 -12.88547 -12.42992 -12.14752 -11.60129 -11.45975 -11.24464 -11.08701 -10.77851 -10.51298 -10.44607 -10.14001 -9.75771 -9.13360 -8.99951 -8.34103 -6.97365 -6.32814 -6.05227 -3.63510 2.60341 2.70863 3.18403 3.21989 3.26032 4.09950 4.33240 4.79060 5.05113 5.19179 5.75423 5.84690 5.90743 5.98944 6.13254 6.13938 6.19926 6.31423 6.39380 6.53701 6.81170 6.85735 7.17273 7.21144 7.32081 7.44917 7.46992 7.75084 7.91366 8.07220 8.32293 8.65302 8.74721 9.39553 9.78640 10.73865 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.035982 B = 0.009765 C = 0.008008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.973311 B = 2866.615695 C = 3495.464174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.167 4.167 3 C -0.110 4.110 4 C -0.181 4.181 5 C 0.165 3.835 6 C 0.108 3.892 7 C -0.142 4.142 8 N -0.761 5.761 9 C 0.104 3.896 10 C 0.135 3.865 11 N -0.461 5.461 12 C -0.292 4.292 13 H 0.089 0.911 14 C 0.023 3.977 15 N -0.884 5.884 16 Si 0.922 3.078 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.271 1.271 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.050 0.950 23 H 0.099 0.901 24 H 0.115 0.885 25 H 0.100 0.900 26 H 0.387 0.613 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.680 -3.609 -1.944 7.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.171 4.171 3 C -0.131 4.131 4 C -0.207 4.207 5 C 0.051 3.949 6 C 0.005 3.995 7 C -0.166 4.166 8 N -0.396 5.396 9 C -0.022 4.022 10 C 0.010 3.990 11 N -0.152 5.152 12 C -0.420 4.420 13 H 0.106 0.894 14 C -0.180 4.180 15 N -0.521 5.521 16 Si 0.749 3.251 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.195 1.195 20 H 0.067 0.933 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.117 0.883 24 H 0.133 0.867 25 H 0.118 0.882 26 H 0.221 0.779 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.113 0.887 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.939 -3.598 -1.926 6.407 hybrid contribution 0.554 0.319 -0.088 0.646 sum -4.385 -3.278 -2.014 5.834 Atomic orbital electron populations 1.20460 0.93124 1.00738 1.00268 1.18958 0.94152 0.92734 1.11239 1.20376 0.93461 0.96010 1.03217 1.20305 0.93130 0.96391 1.10835 1.17734 0.84749 0.91912 1.00485 1.17265 0.90562 0.85029 1.06652 1.19920 0.91200 0.96725 1.08760 1.44229 1.09394 1.06134 1.79877 1.21987 0.82120 0.99386 0.98723 1.21704 0.97098 0.82566 0.97672 1.42367 0.99763 1.09585 1.63528 1.19452 0.97133 1.00235 1.25222 0.89374 1.25333 0.98588 0.98458 0.95598 1.69998 1.21133 1.39913 1.21102 0.85988 0.79206 0.80430 0.79520 1.20402 1.20859 1.19542 0.93280 0.93308 0.93105 0.88319 0.86673 0.88222 0.77938 0.93572 0.91342 0.93228 0.88729 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.33 10.01 36.00 0.36 -0.97 16 2 C -0.17 -3.18 5.88 -104.55 -0.62 -3.80 16 3 C -0.11 -2.24 9.68 -39.55 -0.38 -2.62 16 4 C -0.18 -4.21 9.24 -39.39 -0.36 -4.57 16 5 C 0.17 4.05 6.33 -83.56 -0.53 3.52 16 6 C 0.11 2.35 6.53 -83.41 -0.54 1.81 16 7 C -0.14 -2.79 9.58 -39.43 -0.38 -3.17 16 8 N -0.76 -14.56 5.83 -57.72 -0.34 -14.90 16 9 C 0.10 2.00 7.28 -3.45 -0.03 1.97 16 10 C 0.14 3.17 5.15 -3.46 -0.02 3.15 16 11 N -0.46 -11.89 2.99 -112.24 -0.34 -12.23 16 12 C -0.29 -7.80 8.66 -15.14 -0.13 -7.93 16 13 H 0.09 2.33 7.12 -52.49 -0.37 1.95 16 14 C 0.02 0.60 4.98 -17.45 -0.09 0.51 16 15 N -0.88 -23.82 11.12 55.49 0.62 -23.21 16 16 Si 0.92 20.26 29.58 -169.99 -5.03 15.23 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 22 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 23 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 24 H 0.12 2.72 6.85 -52.49 -0.36 2.36 16 25 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 26 H 0.39 6.20 8.90 -40.82 -0.36 5.83 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.09 2.33 6.42 -51.93 -0.33 1.99 16 31 H 0.27 6.85 8.32 -40.82 -0.34 6.51 16 LS Contribution 256.62 15.07 3.87 3.87 Total: -1.00 -28.42 256.62 -7.87 -36.29 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -3.94 Total: 7.06 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -2.71 Total: -12.12 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.05 Total: -50.33 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.03 Total: 15.23 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.42 -7.87 -36.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076926684.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.244 kcal (2) G-P(sol) polarization free energy of solvation -28.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds