Wall clock time and date at job start Mon Mar 30 2020 02:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38372 * 119.86168 * 2 1 4 4 C 1.38188 * 120.27165 * 180.02562 * 3 2 1 5 5 C 1.38816 * 119.85879 * 359.97438 * 4 3 2 6 6 C 1.39687 * 119.83897 * 359.94146 * 5 4 3 7 7 C 1.38292 * 119.85644 * 179.97438 * 2 1 3 8 8 N 1.40089 * 119.86592 * 180.22877 * 6 5 4 9 9 C 1.47057 * 118.70416 * 343.47713 * 8 6 5 10 10 C 1.53554 * 108.23324 * 44.92562 * 9 8 6 11 11 N 1.39613 * 120.28237 * 179.91606 * 5 4 3 12 12 C 1.36810 * 120.58796 * 343.33497 * 11 5 4 13 13 H 1.08000 * 119.99431 * 333.01815 * 12 11 5 14 14 C 1.38754 * 119.99891 * 153.01488 * 12 11 5 15 15 N 1.31621 * 120.00142 * 345.51870 * 14 12 11 16 16 Si 1.86799 * 119.99501 * 165.51757 * 14 12 11 17 17 H 1.48498 * 109.47529 * 90.00280 * 16 14 12 18 18 H 1.48504 * 109.46975 * 210.00286 * 16 14 12 19 19 H 1.48501 * 109.47120 * 329.99623 * 16 14 12 20 20 H 1.08999 * 109.46775 * 89.99848 * 1 2 3 21 21 H 1.08999 * 109.47016 * 209.99813 * 1 2 3 22 22 H 1.08998 * 109.46993 * 329.99821 * 1 2 3 23 23 H 1.07994 * 119.86141 * 0.02562 * 3 2 1 24 24 H 1.08000 * 120.06586 * 179.97438 * 4 3 2 25 25 H 1.08001 * 120.06008 * 0.02562 * 7 2 1 26 26 H 0.97001 * 120.67758 * 163.46197 * 8 6 5 27 27 H 1.09004 * 109.71802 * 285.23238 * 9 8 6 28 28 H 1.08994 * 109.72012 * 164.62882 * 9 8 6 29 29 H 1.08993 * 109.71247 * 63.06043 * 10 9 8 30 30 H 1.08995 * 109.71484 * 183.69785 * 10 9 8 31 31 H 0.97003 * 119.99744 * 185.04162 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2000 0.0000 4 6 3.5778 1.2099 -0.0005 5 6 4.2775 0.0110 -0.0005 6 6 3.5813 -1.2001 0.0012 7 6 2.1954 -1.1994 0.0005 8 7 4.2869 -2.4103 0.0061 9 6 5.7117 -2.3986 -0.3576 10 6 6.3830 -1.2231 0.3671 11 7 5.6736 0.0106 -0.0028 12 6 6.3695 1.1384 -0.3428 13 1 5.9258 1.8678 -1.0043 14 6 7.6452 1.3451 0.1622 15 7 8.0770 0.6236 1.1749 16 14 8.7498 2.6472 -0.5952 17 1 8.5349 3.9429 0.0978 18 1 10.1698 2.2375 -0.4494 19 1 8.4232 2.7963 -2.0361 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.6515 2.1326 0.0004 24 1 4.1122 2.1484 -0.0009 25 1 1.6541 -2.1339 0.0005 26 1 3.8447 -3.2400 0.2449 27 1 5.8151 -2.2734 -1.4355 28 1 6.1775 -3.3348 -0.0499 29 1 6.3224 -1.3728 1.4450 30 1 7.4274 -1.1519 0.0634 31 1 8.9393 0.8167 1.5752 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076926684.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:41 Heat of formation + Delta-G solvation = 22.909483 kcal Electronic energy + Delta-G solvation = -14623.260593 eV Core-core repulsion = 12289.649393 eV Total energy + Delta-G solvation = -2333.611201 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.76849 -37.75625 -36.05023 -33.75157 -32.31529 -30.79919 -28.65924 -27.45797 -25.15022 -23.79100 -22.82797 -20.43817 -19.02331 -18.00343 -17.58414 -16.57168 -16.31667 -15.45802 -14.92530 -14.74510 -14.62730 -14.39364 -14.03586 -13.77364 -13.33461 -12.94095 -12.89731 -12.65995 -12.55243 -12.21803 -12.10763 -11.82998 -11.45775 -11.01310 -10.61038 -10.14281 -8.67265 -8.24951 -7.79438 -5.62177 0.91892 1.04261 1.40348 1.44387 1.52752 2.29067 2.77727 2.94430 3.31013 3.41002 4.21872 4.28454 4.41762 4.47570 4.56047 4.72868 4.78054 4.87422 5.03603 5.07345 5.13434 5.28591 5.35825 5.41936 5.55974 5.66719 5.77231 6.09244 6.17846 6.33537 6.64542 6.83703 7.21912 7.53589 7.89934 8.80437 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.035982 B = 0.009765 C = 0.008008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.973311 B = 2866.615695 C = 3495.464174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.150 4.150 3 C -0.121 4.121 4 C -0.199 4.199 5 C 0.125 3.875 6 C 0.099 3.901 7 C -0.144 4.144 8 N -0.752 5.752 9 C 0.115 3.885 10 C 0.143 3.857 11 N -0.491 5.491 12 C -0.310 4.310 13 H 0.077 0.923 14 C -0.022 4.022 15 N -0.916 5.916 16 Si 0.987 3.013 17 H -0.276 1.276 18 H -0.278 1.278 19 H -0.267 1.267 20 H 0.066 0.934 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.123 0.877 24 H 0.095 0.905 25 H 0.134 0.866 26 H 0.406 0.594 27 H 0.041 0.959 28 H 0.109 0.891 29 H 0.021 0.979 30 H 0.074 0.926 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.861 -4.512 -2.485 9.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.154 4.154 3 C -0.141 4.141 4 C -0.224 4.224 5 C 0.014 3.986 6 C -0.005 4.005 7 C -0.168 4.168 8 N -0.389 5.389 9 C -0.012 4.012 10 C 0.018 3.982 11 N -0.187 5.187 12 C -0.439 4.439 13 H 0.095 0.905 14 C -0.221 4.221 15 N -0.555 5.555 16 Si 0.812 3.188 17 H -0.202 1.202 18 H -0.203 1.203 19 H -0.191 1.191 20 H 0.085 0.915 21 H 0.087 0.913 22 H 0.083 0.917 23 H 0.141 0.859 24 H 0.113 0.887 25 H 0.152 0.848 26 H 0.243 0.757 27 H 0.060 0.940 28 H 0.127 0.873 29 H 0.039 0.961 30 H 0.092 0.908 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.187 -4.529 -2.472 8.848 hybrid contribution 0.962 0.575 0.096 1.125 sum -6.225 -3.954 -2.376 7.748 Atomic orbital electron populations 1.20541 0.89485 1.02530 1.01942 1.19578 0.96782 0.91870 1.07189 1.20681 0.92315 0.98018 1.03106 1.20429 0.94679 0.95578 1.11745 1.18203 0.84726 0.93544 1.02106 1.17565 0.91680 0.85118 1.06101 1.20360 0.90374 0.98520 1.07505 1.44169 1.09211 1.06141 1.79405 1.21898 0.82158 0.99255 0.97854 1.21499 0.96532 0.83857 0.96309 1.42472 1.00411 1.09918 1.65867 1.19573 0.97960 1.00903 1.25443 0.90508 1.26097 0.99528 1.00604 0.95908 1.70122 1.21447 1.41501 1.22442 0.84999 0.77339 0.77826 0.78680 1.20215 1.20309 1.19115 0.91495 0.91329 0.91663 0.85865 0.88651 0.84839 0.75746 0.94029 0.87333 0.96117 0.90787 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.20 10.01 71.24 0.71 -1.48 16 2 C -0.15 -5.24 5.88 -19.82 -0.12 -5.35 16 3 C -0.12 -4.73 9.68 22.29 0.22 -4.52 16 4 C -0.20 -9.43 9.24 22.40 0.21 -9.23 16 5 C 0.13 6.24 6.33 38.39 0.24 6.49 16 6 C 0.10 4.20 6.53 38.26 0.25 4.45 16 7 C -0.14 -5.19 9.58 22.37 0.21 -4.98 16 8 N -0.75 -27.43 5.83 -336.53 -1.96 -29.39 16 9 C 0.11 4.32 7.28 86.46 0.63 4.94 16 10 C 0.14 6.98 5.15 86.46 0.45 7.42 16 11 N -0.49 -26.38 2.99 -509.01 -1.52 -27.91 16 12 C -0.31 -17.39 8.66 84.04 0.73 -16.67 16 13 H 0.08 4.30 7.12 -2.91 -0.02 4.28 16 14 C -0.02 -1.21 4.98 84.85 0.42 -0.79 16 15 N -0.92 -51.51 11.12 21.64 0.24 -51.27 16 16 Si 0.99 42.95 29.58 68.60 2.03 44.98 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 20 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 22 H 0.06 1.47 8.08 -2.39 -0.02 1.45 16 23 H 0.12 4.12 8.06 -2.91 -0.02 4.09 16 24 H 0.10 4.76 6.85 -2.91 -0.02 4.74 16 25 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 26 H 0.41 11.73 8.90 -92.71 -0.83 10.90 16 27 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 3.83 6.42 -2.39 -0.02 3.81 16 31 H 0.27 14.19 8.32 -92.71 -0.77 13.42 16 Total: -1.00 -63.69 256.62 3.04 -60.65 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.30 Total: 22.65 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 3.95 Total: -19.71 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -3.24 Total: -108.57 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -63.69 3.04 -60.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076926684.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.556 kcal (2) G-P(sol) polarization free energy of solvation -63.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds