Wall clock time and date at job start Mon Mar 30 2020 02:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35900 * 117.00704 * 2 1 4 4 C 1.38654 * 119.94464 * 0.02562 * 3 2 1 5 5 C 1.38115 * 119.86990 * 180.27953 * 4 3 2 6 6 C 1.38177 * 119.99703 * 359.43575 * 5 4 3 7 7 C 1.38502 * 120.33235 * 0.54076 * 6 5 4 8 8 C 1.38169 * 119.87935 * 359.74733 * 7 6 5 9 9 C 1.51359 * 109.77523 * 179.97438 * 8 7 6 10 10 C 1.54350 * 105.16747 * 342.81524 * 9 8 7 11 11 C 1.51379 * 130.36221 * 179.72614 * 7 6 5 12 12 H 1.08994 * 110.30273 * 316.13124 * 11 7 6 13 13 C 1.50699 * 110.30408 * 78.29060 * 11 7 6 14 14 H 1.07995 * 119.99901 * 118.54443 * 13 11 7 15 15 C 1.37878 * 119.99691 * 298.54299 * 13 11 7 16 16 N 1.31512 * 120.00044 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99718 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47007 * 90.00187 * 17 15 13 19 19 H 1.48499 * 109.46828 * 209.99928 * 17 15 13 20 20 H 1.48497 * 109.47015 * 329.99632 * 17 15 13 21 21 H 1.09009 * 109.47013 * 59.99643 * 1 2 3 22 22 H 1.08995 * 109.47445 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47026 * 299.99892 * 1 2 3 24 24 H 1.08002 * 120.06250 * 359.97438 * 4 3 2 25 25 H 1.07999 * 120.00036 * 179.72242 * 5 4 3 26 26 H 1.08000 * 119.83621 * 180.25995 * 6 5 4 27 27 H 1.09003 * 110.30465 * 101.73932 * 9 8 7 28 28 H 1.09000 * 110.30469 * 223.89400 * 9 8 7 29 29 H 1.08998 * 110.82435 * 268.11886 * 10 9 8 30 30 H 1.09007 * 110.99452 * 144.63669 * 10 9 8 31 31 H 0.97007 * 119.99877 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2900 2.3730 0.0005 5 6 1.9187 3.6027 -0.0053 6 6 3.2987 3.6731 0.0001 7 6 4.0581 2.5148 0.0001 8 6 3.4336 1.2823 0.0000 9 6 4.4727 0.1817 -0.0006 10 6 5.7847 0.8652 -0.4410 11 6 5.5602 2.3273 -0.0002 12 1 6.0266 3.0117 -0.7087 13 6 6.1149 2.5474 1.3836 14 1 6.6261 1.7448 1.8944 15 6 5.9698 3.7734 1.9975 16 7 5.3469 4.7506 1.3757 17 14 6.6580 4.0465 3.7126 18 1 8.0549 4.5402 3.6125 19 1 5.8278 5.0507 4.4249 20 1 6.6382 2.7655 4.4636 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.2114 2.3168 0.0005 25 1 1.3318 4.5093 -0.0094 26 1 3.7877 4.6360 -0.0002 27 1 4.5814 -0.2364 1.0001 28 1 4.1965 -0.5989 -0.7095 29 1 5.9111 0.8013 -1.5217 30 1 6.6424 0.4326 0.0742 31 1 5.2451 5.6133 1.8075 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084347631.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:12 Heat of formation + Delta-G solvation = -18.286732 kcal Electronic energy + Delta-G solvation = -14686.765761 eV Core-core repulsion = 12319.075407 eV Total energy + Delta-G solvation = -2367.690354 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.58286 -37.50112 -34.51637 -32.51581 -29.49303 -28.26034 -27.03797 -26.42981 -23.85653 -21.30031 -19.98147 -19.51796 -17.12040 -16.06471 -15.49847 -15.21738 -14.51308 -14.45911 -13.71859 -13.38784 -13.11177 -12.28656 -11.98516 -11.81123 -11.53369 -11.25078 -10.95221 -10.65018 -10.45804 -10.40029 -10.36635 -9.98090 -9.87416 -9.32919 -9.21875 -8.47496 -7.41173 -7.12880 -6.01801 -4.11719 2.39524 2.55894 3.28836 3.35414 3.39121 3.92181 4.39398 4.88299 5.24058 5.35771 5.44122 5.45895 5.65620 5.74888 5.94877 6.09044 6.12374 6.34752 6.47175 6.63869 6.83344 6.93211 6.98243 7.04448 7.12847 7.32940 7.55422 7.66925 7.89883 7.93035 8.09887 8.29541 8.31087 8.90142 9.52287 10.98711 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.033146 B = 0.010205 C = 0.009189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.554333 B = 2743.129600 C = 3046.469705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.325 6.325 3 C 0.111 3.889 4 C -0.234 4.234 5 C -0.111 4.111 6 C -0.110 4.110 7 C 0.007 3.993 8 C -0.148 4.148 9 C -0.056 4.056 10 C -0.117 4.117 11 C 0.074 3.926 12 H 0.037 0.963 13 C -0.503 4.503 14 H 0.062 0.938 15 C 0.063 3.937 16 N -0.881 5.881 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.047 0.953 22 H 0.088 0.912 23 H 0.047 0.953 24 H 0.110 0.890 25 H 0.107 0.893 26 H 0.152 0.848 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.631 -4.755 -2.864 8.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.239 6.239 3 C 0.068 3.932 4 C -0.253 4.253 5 C -0.129 4.129 6 C -0.128 4.128 7 C 0.006 3.994 8 C -0.149 4.149 9 C -0.093 4.093 10 C -0.155 4.155 11 C 0.056 3.944 12 H 0.055 0.945 13 C -0.541 4.541 14 H 0.080 0.920 15 C -0.139 4.139 16 N -0.518 5.518 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.066 0.934 22 H 0.107 0.893 23 H 0.066 0.934 24 H 0.128 0.872 25 H 0.125 0.875 26 H 0.169 0.831 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.589 -4.756 -2.829 8.605 hybrid contribution -0.255 0.462 1.181 1.293 sum -6.844 -4.294 -1.648 8.246 Atomic orbital electron populations 1.22849 0.80178 1.02547 1.00721 1.86019 1.19905 1.28208 1.89796 1.18517 0.90818 0.83381 1.00507 1.20769 0.98278 0.92716 1.13509 1.20822 0.95248 0.95758 1.01087 1.21353 0.91660 1.00835 0.98948 1.21022 0.97821 0.90591 0.89950 1.19964 0.89731 0.97464 1.07717 1.20705 0.92969 0.95200 1.00446 1.22376 0.96269 0.98250 0.98569 1.18406 0.87629 0.91241 0.97140 0.94495 1.21092 1.35209 0.97351 1.00423 0.92028 1.24992 0.94931 0.96092 0.97921 1.69817 1.41335 1.03077 1.37606 0.86543 0.78863 0.78039 0.84313 1.20583 1.21222 1.19917 0.93441 0.89336 0.93399 0.87203 0.87459 0.83113 0.91555 0.92917 0.93356 0.91603 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.32 -6.13 10.44 -19.43 -0.20 -6.34 16 3 C 0.11 2.37 6.69 -39.17 -0.26 2.11 16 4 C -0.23 -4.64 9.03 -39.47 -0.36 -5.00 16 5 C -0.11 -2.32 10.04 -39.65 -0.40 -2.72 16 6 C -0.11 -2.63 8.79 -39.51 -0.35 -2.98 16 7 C 0.01 0.17 5.13 -104.22 -0.53 -0.36 16 8 C -0.15 -3.42 6.11 -104.07 -0.64 -4.06 16 9 C -0.06 -1.18 6.70 -26.85 -0.18 -1.36 16 10 C -0.12 -2.48 6.59 -25.31 -0.17 -2.65 16 11 C 0.07 1.86 2.82 -91.88 -0.26 1.60 16 12 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 13 C -0.50 -13.63 8.53 -34.44 -0.29 -13.93 16 14 H 0.06 1.65 7.57 -52.49 -0.40 1.25 16 15 C 0.06 1.70 5.32 -17.82 -0.09 1.60 16 16 N -0.88 -24.10 9.66 55.43 0.54 -23.57 16 17 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H 0.05 0.59 7.66 -51.92 -0.40 0.19 16 22 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.05 0.61 7.66 -51.93 -0.40 0.22 16 24 H 0.11 1.82 6.29 -52.49 -0.33 1.49 16 25 H 0.11 1.94 8.06 -52.49 -0.42 1.51 16 26 H 0.15 3.81 6.01 -52.49 -0.32 3.50 16 27 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.33 7.74 -51.93 -0.40 0.93 16 31 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 256.51 15.07 3.87 3.87 Total: -1.00 -28.79 256.51 -7.27 -36.06 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -3.91 Total: 0.14 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -2.54 Total: -26.30 kcal Atomic # 7 Polarization: -24.10 SS G_CDS: 0.54 Total: -23.57 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.20 Total: -6.34 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.79 -7.27 -36.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084347631.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.770 kcal (2) G-P(sol) polarization free energy of solvation -28.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds